BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1220.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_995632.1| binding-protein-dependent transport systems inn... 358 5e-97 ref|YP_004152606.1| binding-protein-dependent transport systems ... 351 9e-95 ref|YP_002942196.1| binding-protein-dependent transport systems ... 350 1e-94 gb|EFV85205.1| ABC transporter [Achromobacter xylosoxidans C54] 345 4e-93 gb|EGP48218.1| ABC transporter permease [Achromobacter xylosoxid... 345 6e-93 >ref|YP_995632.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] gb|ABM56614.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] Length = 264 Score = 358 bits (919), Expect = 5e-97, Method: Composition-based stats. Identities = 204/263 (77%), Positives = 231/263 (87%), Gaps = 1/263 (0%) Query: 20 STAAPAPKAPRKAPALGRLLPIVGPIALFVIWDLVVRAGWIKAILLPPPEATLMAMFKGL 79 S A A PR+ P GRLLP +GP+ALFV WD+VVR G I+AILLPPP AT+ + GL Sbjct: 3 SRARLAAAPPRRLP-WGRLLPCIGPVALFVAWDIVVRTGMIRAILLPPPAATVTTLVTGL 61 Query: 80 AGGPLLLDFTVTVIRTLEAFVIAAVLGLPIGVLLGSNERAYRSVEFLIDFFRSTPSSALI 139 GG LL DF TV RTL+AF +AAV+G+P+GVLLGSNE+AYRSVEFLIDFFRSTPSSALI Sbjct: 62 LGGALLTDFLFTVWRTLQAFGVAAVVGVPLGVLLGSNEKAYRSVEFLIDFFRSTPSSALI 121 Query: 140 PLFLLIFGVSDINKVAIAAFGAFLIVLFNSAYGVLNARKQRVMAAKVMGASRWRIFCDVL 199 PLFLLIFGVSDINKVAIAAFG+ LIV+FNSAYGV+NAR+QR+MAAKVMGASRW+IF DVL Sbjct: 122 PLFLLIFGVSDINKVAIAAFGSLLIVIFNSAYGVINARRQRIMAAKVMGASRWQIFKDVL 181 Query: 200 IWESLQASFVGLRSAVSMALVIVIVAEMFIGSENGLGHRIIDTQQVLNVREMYAAILSAG 259 I ESLQ SFVGLRSAVSMALVIV+VAEMFIGS+NGLGHRIID QQVLNV+ MYAAIL+AG Sbjct: 182 IRESLQPSFVGLRSAVSMALVIVVVAEMFIGSDNGLGHRIIDAQQVLNVKTMYAAILAAG 241 Query: 260 ALGYALNVVFIVIEKRIVHWSGR 282 LGYALNV+F+V+E+RIVHWSGR Sbjct: 242 MLGYALNVLFLVLERRIVHWSGR 264 >ref|YP_004152606.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU34495.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 275 Score = 351 bits (900), Expect = 9e-95, Method: Composition-based stats. Identities = 209/275 (76%), Positives = 237/275 (86%), Gaps = 4/275 (1%) Query: 8 AVTVAPKPAAPASTAAPAPKAPRKAPALGRLLPIVGPIALFVIWDLVVRAGWIKAILLPP 67 + T A PAS A PK P + RLLP +GP+ALF+ WDLVVR G+IK ILLP Sbjct: 5 STTTAAPWTPPASLNAAVPKPPLR----DRLLPFIGPVALFIAWDLVVRLGFIKPILLPS 60 Query: 68 PEATLMAMFKGLAGGPLLLDFTVTVIRTLEAFVIAAVLGLPIGVLLGSNERAYRSVEFLI 127 P T+ A+ GLAGGPLL DF +TV RTL+AFVIAAV+G+P+GVLLGSNE+AYRSVEFLI Sbjct: 61 PADTIAALITGLAGGPLLTDFAMTVWRTLQAFVIAAVVGVPLGVLLGSNEKAYRSVEFLI 120 Query: 128 DFFRSTPSSALIPLFLLIFGVSDINKVAIAAFGAFLIVLFNSAYGVLNARKQRVMAAKVM 187 DFFRSTPSSALIPLFLLIFGVSD+NK+AIAAFGA LIV+FNSAYGV+NARKQRVMAAKVM Sbjct: 121 DFFRSTPSSALIPLFLLIFGVSDVNKIAIAAFGALLIVVFNSAYGVINARKQRVMAAKVM 180 Query: 188 GASRWRIFCDVLIWESLQASFVGLRSAVSMALVIVIVAEMFIGSENGLGHRIIDTQQVLN 247 GASRW++F DVLIWESLQ SFVGLRSAVSMALVIVIVAEMFIGS+ GLGHRIID QQVLN Sbjct: 181 GASRWQVFKDVLIWESLQPSFVGLRSAVSMALVIVIVAEMFIGSDTGLGHRIIDAQQVLN 240 Query: 248 VREMYAAILSAGALGYALNVVFIVIEKRIVHWSGR 282 V+ MYAAIL+AGALGYALN++F++ E+RIVHWSGR Sbjct: 241 VKSMYAAILAAGALGYALNILFLLAERRIVHWSGR 275 >ref|YP_002942196.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS16930.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 276 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 205/262 (78%), Positives = 233/262 (88%), Gaps = 4/262 (1%) Query: 21 TAAPAPKAPRKAPALGRLLPIVGPIALFVIWDLVVRAGWIKAILLPPPEATLMAMFKGLA 80 TAA APK P + RLLP +GP+ALF++WDL VR G+IK ILLP P T+ A+ GLA Sbjct: 19 TAASAPKPPLR----DRLLPFIGPLALFIVWDLAVRLGFIKPILLPTPADTVAALITGLA 74 Query: 81 GGPLLLDFTVTVIRTLEAFVIAAVLGLPIGVLLGSNERAYRSVEFLIDFFRSTPSSALIP 140 GGPLL DF +TV RTL+AF IAAV+G+P+GVLLGSNE+AYRSVEFLIDFFRSTPSSALIP Sbjct: 75 GGPLLTDFAMTVWRTLQAFAIAAVVGVPLGVLLGSNEKAYRSVEFLIDFFRSTPSSALIP 134 Query: 141 LFLLIFGVSDINKVAIAAFGAFLIVLFNSAYGVLNARKQRVMAAKVMGASRWRIFCDVLI 200 LFLLIFGVSD+NKVAIAAFGA LIV+FNSAYGV+NARKQRVMAA+VMGASRW+IF DVL+ Sbjct: 135 LFLLIFGVSDVNKVAIAAFGALLIVVFNSAYGVINARKQRVMAARVMGASRWQIFKDVLV 194 Query: 201 WESLQASFVGLRSAVSMALVIVIVAEMFIGSENGLGHRIIDTQQVLNVREMYAAILSAGA 260 WESLQ SFVGLRSAVSMALVIVIVAEMFIGS+ GLGHRIID QQVLNV+ MYAAIL+AGA Sbjct: 195 WESLQPSFVGLRSAVSMALVIVIVAEMFIGSDTGLGHRIIDAQQVLNVKSMYAAILAAGA 254 Query: 261 LGYALNVVFIVIEKRIVHWSGR 282 LGYALN++F++ E+RIVHWSGR Sbjct: 255 LGYALNILFLIAERRIVHWSGR 276 >gb|EFV85205.1| ABC transporter [Achromobacter xylosoxidans C54] Length = 254 Score = 345 bits (886), Expect = 4e-93, Method: Composition-based stats. Identities = 188/254 (74%), Positives = 228/254 (89%) Query: 29 PRKAPALGRLLPIVGPIALFVIWDLVVRAGWIKAILLPPPEATLMAMFKGLAGGPLLLDF 88 P + RLLP++GP+AL+V+WDLVVR + +LLP P ATL+A+ KG+AGGPLL DF Sbjct: 1 PPRTWTAARLLPLIGPLALYVVWDLVVRLQLVSPVLLPTPGATLVALAKGMAGGPLLGDF 60 Query: 89 TVTVIRTLEAFVIAAVLGLPIGVLLGSNERAYRSVEFLIDFFRSTPSSALIPLFLLIFGV 148 +V RTL+AFVIA V+G+P+GVLLGSNE+AYRSVEFL+DFFRSTPSSALIPLFL+IFGV Sbjct: 61 LASVSRTLQAFVIAGVIGVPLGVLLGSNEKAYRSVEFLVDFFRSTPSSALIPLFLMIFGV 120 Query: 149 SDINKVAIAAFGAFLIVLFNSAYGVLNARKQRVMAAKVMGASRWRIFCDVLIWESLQASF 208 +D+NK+AIAAF A L++LFNSAYGV+NARKQRVMAA+VMGASRW+IF DVLIWESLQ +F Sbjct: 121 TDMNKIAIAAFAAVLVILFNSAYGVINARKQRVMAARVMGASRWQIFKDVLIWESLQPTF 180 Query: 209 VGLRSAVSMALVIVIVAEMFIGSENGLGHRIIDTQQVLNVREMYAAILSAGALGYALNVV 268 VGLRS VSMALVIVIVAEMFIGS++GLG+RII+ QQVLNVR+MYA+IL+AGALGY LN++ Sbjct: 181 VGLRSGVSMALVIVIVAEMFIGSDSGLGNRIINAQQVLNVRDMYASILAAGALGYVLNIL 240 Query: 269 FIVIEKRIVHWSGR 282 F+V+EKR+VHWSGR Sbjct: 241 FLVLEKRVVHWSGR 254 >gb|EGP48218.1| ABC transporter permease [Achromobacter xylosoxidans AXX-A] Length = 269 Score = 345 bits (884), Expect = 6e-93, Method: Composition-based stats. Identities = 187/247 (75%), Positives = 226/247 (91%) Query: 36 GRLLPIVGPIALFVIWDLVVRAGWIKAILLPPPEATLMAMFKGLAGGPLLLDFTVTVIRT 95 RLLP++GP+AL+V+WDLVVR + +LLP P ATL+A+ KG+AGGPLL DF +V RT Sbjct: 23 ARLLPLIGPLALYVVWDLVVRLQLVSPVLLPTPGATLVALAKGMAGGPLLGDFLASVSRT 82 Query: 96 LEAFVIAAVLGLPIGVLLGSNERAYRSVEFLIDFFRSTPSSALIPLFLLIFGVSDINKVA 155 L+AFVIA V+G+P+GVLLGSNE+AYRSVEFL+DFFRSTPSSALIPLFL+IFGV+D+NK+A Sbjct: 83 LQAFVIAGVIGVPLGVLLGSNEKAYRSVEFLVDFFRSTPSSALIPLFLMIFGVTDMNKIA 142 Query: 156 IAAFGAFLIVLFNSAYGVLNARKQRVMAAKVMGASRWRIFCDVLIWESLQASFVGLRSAV 215 IAAF A L++LFNSAYGV+NARKQRVMAA+VMGASRW+IF DVLIWESLQ +FVGLRS V Sbjct: 143 IAAFAAVLVILFNSAYGVINARKQRVMAARVMGASRWQIFKDVLIWESLQPTFVGLRSGV 202 Query: 216 SMALVIVIVAEMFIGSENGLGHRIIDTQQVLNVREMYAAILSAGALGYALNVVFIVIEKR 275 SMALVIVIVAEMFIGS++GLG+RII+ QQVLNVR+MYA+IL+AGALGY LN++F+V+EKR Sbjct: 203 SMALVIVIVAEMFIGSDSGLGNRIINAQQVLNVRDMYASILAAGALGYVLNILFLVLEKR 262 Query: 276 IVHWSGR 282 +VHWSGR Sbjct: 263 VVHWSGR 269