BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1217.p (387 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_03266234.1| inner-membrane translocator [Burkholderia sp.... 391 e-106 ref|YP_553945.1| ABC transporter inner membrane subunit [Burkhol... 384 e-104 ref|ZP_06838921.1| inner-membrane translocator [Burkholderia sp.... 382 e-104 ref|YP_001888971.1| inner-membrane translocator [Burkholderia ph... 381 e-103 gb|EGH57703.1| ABC transporter permease [Pseudomonas syringae pv... 369 e-100 >ref|ZP_03266234.1| inner-membrane translocator [Burkholderia sp. H160] gb|EEA02173.1| inner-membrane translocator [Burkholderia sp. H160] Length = 384 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 255/337 (75%), Positives = 293/337 (86%), Gaps = 1/337 (0%) Query: 38 PTLCALAGTLLLFVLFLLVQGKPAGEACLLIFQGAFGTLFAWQNTLQRAAPLLLTALCVA 97 PT+CA+ TL +F +FLLVQG+PA EA LI +GAFG+ FAWQNTL RAAPL+LTALCVA Sbjct: 31 PTVCAIVATLAIFGIFLLVQGQPAIEALGLIGKGAFGSSFAWQNTLLRAAPLMLTALCVA 90 Query: 98 LPARVGLIVIGGEGALALGGLAAAVMPQLLP-ALPSLVMLAVMALAAMLAGGLWIALCGG 156 LPA+VGLIVIGGEGALALGGLAAAV+PQ LP A P +V +MA+A MLAGGLWI+ G Sbjct: 91 LPAQVGLIVIGGEGALALGGLAAAVVPQCLPHATPWIVATPLMAIAGMLAGGLWISAVGA 150 Query: 157 LRQWRGVNETISSLLLSYLAVAVFKHLVEGPLRDPASLNKPSTLPLPDPYLVGSLPGLEV 216 +RQWRGVNETISSLL+SY+A+AVFK LVEGPLRDPASLNKPSTLPLPD +GSLPGL+V Sbjct: 151 MRQWRGVNETISSLLMSYIAIAVFKFLVEGPLRDPASLNKPSTLPLPDAVTIGSLPGLDV 210 Query: 217 HWGLAWGALACVAAWVFLRHSVAGFAMGVVGGNVRTARLVGLPVNRLILTACALGGAAAG 276 HWGL WG LAC+AAWV +RHS GFAM V GGNVRTARLVGLPV L LTACALGGA+AG Sbjct: 211 HWGLFWGVLACLAAWVLVRHSTLGFAMRVTGGNVRTARLVGLPVGGLALTACALGGASAG 270 Query: 277 LAGMFEVSAVQGSATSALLAGYGFSGILVAFAARQNPLAIIVCALVIGGVEASGSLLQRR 336 LAGMFEV+AVQGSA ++LL+GYG++GILVAFAARQNP A+IVCAL++GG+EASGSLLQRR Sbjct: 271 LAGMFEVAAVQGSANASLLSGYGYAGILVAFAARQNPFAVIVCALMVGGIEASGSLLQRR 330 Query: 337 LDLPDATTLVLQGLLFCNLLAWEAITGRLSALKLRWQ 373 L LPDA TLVLQGLLF NLLAWEA+ RL+A +++ Q Sbjct: 331 LGLPDAATLVLQGLLFANLLAWEALAPRLAAWRMKLQ 367 >ref|YP_553945.1| ABC transporter inner membrane subunit [Burkholderia xenovorans LB400] gb|ABE34595.1| nucleoside ABC transporter membrane protein [Burkholderia xenovorans LB400] Length = 371 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 259/344 (75%), Positives = 301/344 (87%), Gaps = 1/344 (0%) Query: 35 PAVPTLCALAGTLLLFVLFLLVQGKPAGEACLLIFQGAFGTLFAWQNTLQRAAPLLLTAL 94 PA+PT+ A+ GTLLLF LFLLVQG+PA +A +LIFQGAFG+ FAWQ+TL RAAPL+LTAL Sbjct: 16 PALPTVLAVLGTLLLFSLFLLVQGQPALDAIVLIFQGAFGSSFAWQSTLLRAAPLMLTAL 75 Query: 95 CVALPARVGLIVIGGEGALALGGLAAAVMPQLLP-ALPSLVMLAVMALAAMLAGGLWIAL 153 CVALPA+VGLIVIGGEGALALGG+ AA++PQ+LP P L+ +MALA MLAGG+WI Sbjct: 76 CVALPAQVGLIVIGGEGALALGGMCAAIVPQMLPHNTPWLIATPLMALAGMLAGGVWIGA 135 Query: 154 CGGLRQWRGVNETISSLLLSYLAVAVFKHLVEGPLRDPASLNKPSTLPLPDPYLVGSLPG 213 G LRQWRGVNETISSLL+SY+A+AVFKHLVEGPLRDPASLNKPSTLP+PD ++GS+PG Sbjct: 136 VGALRQWRGVNETISSLLMSYIAIAVFKHLVEGPLRDPASLNKPSTLPVPDAMMIGSIPG 195 Query: 214 LEVHWGLAWGALACVAAWVFLRHSVAGFAMGVVGGNVRTARLVGLPVNRLILTACALGGA 273 L+ HWGL WG +ACVAAWVF++ S GFAM VVGG+ R ARLVGLPVN L LTAC LGGA Sbjct: 196 LDTHWGLFWGVVACVAAWVFVKFSTKGFAMRVVGGSNRAARLVGLPVNVLALTACVLGGA 255 Query: 274 AAGLAGMFEVSAVQGSATSALLAGYGFSGILVAFAARQNPLAIIVCALVIGGVEASGSLL 333 AAGL GMFEV+AVQGSA ++LLAGYG++GILVAFAARQNPLAII CAL+IGG+EASGSLL Sbjct: 256 AAGLGGMFEVAAVQGSANASLLAGYGYAGILVAFAARQNPLAIIACALMIGGIEASGSLL 315 Query: 334 QRRLDLPDATTLVLQGLLFCNLLAWEAITGRLSALKLRWQQQAQ 377 QRRLDLPDATTLVLQGLLF NLLAWEA+ GR++A +++ Q AQ Sbjct: 316 QRRLDLPDATTLVLQGLLFANLLAWEALGGRIAAWRVKLQAAAQ 359 >ref|ZP_06838921.1| inner-membrane translocator [Burkholderia sp. Ch1-1] gb|EFG73367.1| inner-membrane translocator [Burkholderia sp. Ch1-1] Length = 371 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 258/344 (75%), Positives = 300/344 (87%), Gaps = 1/344 (0%) Query: 35 PAVPTLCALAGTLLLFVLFLLVQGKPAGEACLLIFQGAFGTLFAWQNTLQRAAPLLLTAL 94 PA+PT+ A+ GTLLLF LFLLVQG+PA +A +LIFQGAFG+ FAWQ+TL RAAPL+LTAL Sbjct: 16 PALPTVLAVLGTLLLFSLFLLVQGQPALDAIVLIFQGAFGSSFAWQSTLLRAAPLMLTAL 75 Query: 95 CVALPARVGLIVIGGEGALALGGLAAAVMPQLLP-ALPSLVMLAVMALAAMLAGGLWIAL 153 CVALPA+VGLIVIGGEGALALGG+ AA++PQ+LP P L+ +MALA MLAGG+WI Sbjct: 76 CVALPAQVGLIVIGGEGALALGGMCAAIVPQILPHGTPWLIATPLMALAGMLAGGVWIGA 135 Query: 154 CGGLRQWRGVNETISSLLLSYLAVAVFKHLVEGPLRDPASLNKPSTLPLPDPYLVGSLPG 213 G LRQWRGVNETISSLL+SY+A+AVFKHLVEGPLRDPASLNKPSTLP+PD ++GS+PG Sbjct: 136 VGALRQWRGVNETISSLLMSYIAIAVFKHLVEGPLRDPASLNKPSTLPVPDAMMIGSIPG 195 Query: 214 LEVHWGLAWGALACVAAWVFLRHSVAGFAMGVVGGNVRTARLVGLPVNRLILTACALGGA 273 L+ HWGL WG +ACVAAWVF++ S GFAM VVGG+ R ARLVGLPVN L LTAC LGGA Sbjct: 196 LDTHWGLFWGVVACVAAWVFVKFSTKGFAMRVVGGSNRAARLVGLPVNVLALTACVLGGA 255 Query: 274 AAGLAGMFEVSAVQGSATSALLAGYGFSGILVAFAARQNPLAIIVCALVIGGVEASGSLL 333 AAGL GMFEV+AVQGSA ++LLAGYG++GILVAFAARQNPLAII CAL+IGG+EASGSLL Sbjct: 256 AAGLGGMFEVAAVQGSANASLLAGYGYAGILVAFAARQNPLAIIACALMIGGIEASGSLL 315 Query: 334 QRRLDLPDATTLVLQGLLFCNLLAWEAITGRLSALKLRWQQQAQ 377 QRRLDLPDATTLVLQGLLF NLLAWEA+ G ++A +++ Q AQ Sbjct: 316 QRRLDLPDATTLVLQGLLFANLLAWEALGGHIAAWRVKLQAAAQ 359 >ref|YP_001888971.1| inner-membrane translocator [Burkholderia phytofirmans PsJN] gb|ACD19601.1| inner-membrane translocator [Burkholderia phytofirmans PsJN] Length = 371 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 257/344 (74%), Positives = 299/344 (86%), Gaps = 1/344 (0%) Query: 35 PAVPTLCALAGTLLLFVLFLLVQGKPAGEACLLIFQGAFGTLFAWQNTLQRAAPLLLTAL 94 PA+PT+ A+ GTLLLF LFLL QG+PA +A LIFQGAFG+ FAWQ+TL RAAPL+LTAL Sbjct: 16 PALPTVLAVLGTLLLFSLFLLAQGQPAPDAIALIFQGAFGSSFAWQSTLLRAAPLMLTAL 75 Query: 95 CVALPARVGLIVIGGEGALALGGLAAAVMPQLLP-ALPSLVMLAVMALAAMLAGGLWIAL 153 CVALPA+VGLIVIGGEGALALGG+ AA++PQ+LP P L+ +MALA MLAGG+WI Sbjct: 76 CVALPAQVGLIVIGGEGALALGGMCAAIVPQMLPHNTPWLIATPLMALAGMLAGGVWIGA 135 Query: 154 CGGLRQWRGVNETISSLLLSYLAVAVFKHLVEGPLRDPASLNKPSTLPLPDPYLVGSLPG 213 G LRQWRGVNETISSLL+SY+A+AVFKHLVEGPLRDPASLNKPSTLP+PD ++GS+PG Sbjct: 136 VGALRQWRGVNETISSLLMSYIAIAVFKHLVEGPLRDPASLNKPSTLPVPDAMMIGSIPG 195 Query: 214 LEVHWGLAWGALACVAAWVFLRHSVAGFAMGVVGGNVRTARLVGLPVNRLILTACALGGA 273 L+ HWGL WG +AC+AAWVF++ S GFAM VVGG+ R ARLVGLPVN L LTAC LGGA Sbjct: 196 LDTHWGLFWGVVACIAAWVFVKFSTKGFAMRVVGGSNRAARLVGLPVNMLALTACVLGGA 255 Query: 274 AAGLAGMFEVSAVQGSATSALLAGYGFSGILVAFAARQNPLAIIVCALVIGGVEASGSLL 333 AAGL GMFEV+AVQGSA ++LLAGYG++GILVAFAARQNPLAII CAL+IGG+EASGSLL Sbjct: 256 AAGLGGMFEVAAVQGSANASLLAGYGYAGILVAFAARQNPLAIIACALMIGGIEASGSLL 315 Query: 334 QRRLDLPDATTLVLQGLLFCNLLAWEAITGRLSALKLRWQQQAQ 377 QRRLDLPDATTLVLQGLLF NLLAWEA+ GR++A +++ Q AQ Sbjct: 316 QRRLDLPDATTLVLQGLLFANLLAWEALGGRIAAWRVKLQAIAQ 359 >gb|EGH57703.1| ABC transporter permease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 366 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 248/364 (68%), Positives = 292/364 (80%), Gaps = 5/364 (1%) Query: 24 RLRSALLNGVAPAVPTLCALAGTLLLFVLFLLVQGKPAGEACLLIFQGAFGTLFAWQNTL 83 R SALL P +PTL A+ + +LF LFL +QGKPA +A L+ +GAFG+ FA +NTL Sbjct: 5 RFASALL----PGLPTLLAVFSSCVLFGLFLAIQGKPAWQALQLVGEGAFGSWFALENTL 60 Query: 84 QRAAPLLLTALCVALPARVGLIVIGGEGALALGGLAAAVMPQLLPALPSLVMLAVMALAA 143 QRAAPL+LTALCVALPAR GLI+IGGEGAL LGGLAAAV P L LP+ VML+ MALAA Sbjct: 61 QRAAPLMLTALCVALPARAGLIIIGGEGALVLGGLAAAVTPLWLGHLPAAVMLSGMALAA 120 Query: 144 MLAGGLWIALCGGLRQWRGVNETISSLLLSYLAVAVFKHLVEGPLRDPASLNKPSTLPLP 203 M G LWI L G +RQ RGVNETISSLLLSY+A+A+F+ LVEGPLRDPASLNKPST PL Sbjct: 121 MTVGALWIGLSGWMRQRRGVNETISSLLLSYIALALFRQLVEGPLRDPASLNKPSTPPLD 180 Query: 204 DPYLVGSLP-GLEVHWGLAWGALACVAAWVFLRHSVAGFAMGVVGGNVRTARLVGLPVNR 262 D YLVG+L G EVHWGL G +AC+ A+V +RHSV GFA+ VVGGNVRTA ++GLPV+R Sbjct: 181 DAYLVGTLSDGFEVHWGLVAGVVACLLAYVLVRHSVKGFALAVVGGNVRTALMIGLPVDR 240 Query: 263 LILTACALGGAAAGLAGMFEVSAVQGSATSALLAGYGFSGILVAFAARQNPLAIIVCALV 322 LIL +C LGGAAAGLAGMFEV+AVQGSA +AL+AGYG SGILVAFAAR +PLAIIVCA++ Sbjct: 241 LILLSCLLGGAAAGLAGMFEVTAVQGSANAALIAGYGTSGILVAFAARHHPLAIIVCAIL 300 Query: 323 IGGVEASGSLLQRRLDLPDATTLVLQGLLFCNLLAWEAITGRLSALKLRWQQQAQVIPAK 382 +GG+EASG LLQRRL LPDATTL+L+GLLF NLL WEA+ GR++A K+R + K Sbjct: 301 LGGLEASGGLLQRRLGLPDATTLILEGLLFTNLLLWEALGGRIAAWKIRLTTPPAPVDDK 360 Query: 383 EAGH 386 A H Sbjct: 361 GAIH 364