BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1216.p (394 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774835.1| ABC transporter permease [Herbaspirillum ser... 517 e-144 gb|EGH75875.1| ABC transporter permease [Pseudomonas syringae pv... 386 e-105 ref|YP_001888970.1| inner-membrane translocator [Burkholderia ph... 383 e-104 ref|YP_553944.1| ABC transporter inner membrane subunit [Burkhol... 381 e-104 ref|ZP_06838922.1| inner-membrane translocator [Burkholderia sp.... 381 e-103 >ref|YP_003774835.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62927.1| ABC-type transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 301/306 (98%), Positives = 303/306 (99%) Query: 89 MHDIDLTTLLLALFAGAIRVGTPFLFVSLGECLTEKGGRVNLGLEGILVCGAMTGYAASF 148 MHDID TTLLLALFAGAIRVGTPFLFVSLGECLTEKGGRVNLGLEGILVCGAMTGYAASF Sbjct: 1 MHDIDFTTLLLALFAGAIRVGTPFLFVSLGECLTEKGGRVNLGLEGILVCGAMTGYAASF 60 Query: 149 YSGSAWLGVLAAGCAGLLLGVLHGVVCSLPRVNDIAFGIALMLLGTGLAFFLGKPFIQPQ 208 YSGSAWLGVLAAGC GLLLGVLHGVVCSLPRVNDIAFGIALMLLGTGLAFFLGKPFIQPQ Sbjct: 61 YSGSAWLGVLAAGCTGLLLGVLHGVVCSLPRVNDIAFGIALMLLGTGLAFFLGKPFIQPQ 120 Query: 209 APMLPSIDLGAWSSNDRLHHALQINALFFIGVALALVLQWGLSATRWGLALRLVGDHAET 268 APMLPSIDLGAWSSNDRLHHALQINALFFIGV LALVLQWGLSATRWGLALRLVGDHAET Sbjct: 121 APMLPSIDLGAWSSNDRLHHALQINALFFIGVVLALVLQWGLSATRWGLALRLVGDHAET 180 Query: 269 ARALGYRLTGTRIAATAAGGFLAAIGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWQ 328 ARALGYRLTGTRIAATAAGGFLAA+GGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWQ Sbjct: 181 ARALGYRLTGTRIAATAAGGFLAAVGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWQ 240 Query: 329 PWRCLLAALLFGAAGALGPALQAVGVTSGYYLFNAAPYALTLLIMILTCRPDRTLSSAPG 388 PWRCLLAALLFGAAGALGPALQAVGVTSGYYLFNAAPYALTLLIMI+TCRPDRTLSSAPG Sbjct: 241 PWRCLLAALLFGAAGALGPALQAVGVTSGYYLFNAAPYALTLLIMIMTCRPDRTLSSAPG 300 Query: 389 ELSLTR 394 ELSLTR Sbjct: 301 ELSLTR 306 >gb|EGH75875.1| ABC transporter permease [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 306 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 242/306 (79%), Positives = 263/306 (85%) Query: 89 MHDIDLTTLLLALFAGAIRVGTPFLFVSLGECLTEKGGRVNLGLEGILVCGAMTGYAASF 148 M DIDLTT LLAL AGAIRVGTPFLFVSLGECLTEK GR+NLGLEGILV GAM+GYA + Sbjct: 1 MADIDLTTFLLALMAGAIRVGTPFLFVSLGECLTEKSGRINLGLEGILVAGAMSGYAVAC 60 Query: 149 YSGSAWLGVLAAGCAGLLLGVLHGVVCSLPRVNDIAFGIALMLLGTGLAFFLGKPFIQPQ 208 SGSAWLGV AA G+LLG+LHG+ CSLPRVNDIAFGIAL+LLGTGLAFFLGK FIQPQ Sbjct: 61 LSGSAWLGVGAAAGVGVLLGLLHGLACSLPRVNDIAFGIALILLGTGLAFFLGKAFIQPQ 120 Query: 209 APMLPSIDLGAWSSNDRLHHALQINALFFIGVALALVLQWGLSATRWGLALRLVGDHAET 268 APMLPS+ LGAWSS +R+ AL IN LFF+G ALA VL WGL TRWGL LRLVGDHAET Sbjct: 121 APMLPSLALGAWSSEERVRSALNINVLFFVGAALAFVLHWGLRTTRWGLMLRLVGDHAET 180 Query: 269 ARALGYRLTGTRIAATAAGGFLAAIGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWQ 328 A+ALGYR RI ATA GG LA IGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARW+ Sbjct: 181 AQALGYRPLKVRIVATAVGGGLAGIGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWR 240 Query: 329 PWRCLLAALLFGAAGALGPALQAVGVTSGYYLFNAAPYALTLLIMILTCRPDRTLSSAPG 388 P CL A+LLFGAAGA+GPALQAVG+++GYYLF AAPYALTL++M TCR RTL+ APG Sbjct: 241 PLACLWASLLFGAAGAIGPALQAVGISTGYYLFAAAPYALTLVVMYATCRRGRTLNGAPG 300 Query: 389 ELSLTR 394 ELSLTR Sbjct: 301 ELSLTR 306 >ref|YP_001888970.1| inner-membrane translocator [Burkholderia phytofirmans PsJN] gb|ACD19600.1| inner-membrane translocator [Burkholderia phytofirmans PsJN] Length = 308 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 250/308 (81%), Positives = 272/308 (88%), Gaps = 1/308 (0%) Query: 87 PAMHDIDLTTLLLALFAGAIRVGTPFLFVSLGECLTEKGGRVNLGLEGILVCGAMTGYAA 146 P MH + LLL+LFAGAIRV TP+LFVSLGECLTEKGGRVNLGLEGILV GAM+GYA Sbjct: 2 PDMHS-PIVILLLSLFAGAIRVSTPYLFVSLGECLTEKGGRVNLGLEGILVSGAMSGYAG 60 Query: 147 SFYSGSAWLGVLAAGCAGLLLGVLHGVVCSLPRVNDIAFGIALMLLGTGLAFFLGKPFIQ 206 +F SGS W+GVLAAG GLLLG LHG+VCSLPRV+DIAFGIALMLLGTGLAF+LGKPFI+ Sbjct: 61 AFLSGSPWIGVLAAGSVGLLLGCLHGLVCSLPRVSDIAFGIALMLLGTGLAFYLGKPFIE 120 Query: 207 PQAPMLPSIDLGAWSSNDRLHHALQINALFFIGVALALVLQWGLSATRWGLALRLVGDHA 266 PQAPMLP IDLGAWSS+ +LH+AL +N LF IGVALA VLQWGL TRWG+ LRLVGDHA Sbjct: 121 PQAPMLPFIDLGAWSSSPQLHNALHLNLLFVIGVALAFVLQWGLRNTRWGMVLRLVGDHA 180 Query: 267 ETARALGYRLTGTRIAATAAGGFLAAIGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFAR 326 ETARA+GY LT RIAATA GG A +GGAYLSL YPGSWNEGLSSGQGLMAVALVIFAR Sbjct: 181 ETARAMGYPLTRVRIAATAVGGVFAGVGGAYLSLVYPGSWNEGLSSGQGLMAVALVIFAR 240 Query: 327 WQPWRCLLAALLFGAAGALGPALQAVGVTSGYYLFNAAPYALTLLIMILTCRPDRTLSSA 386 WQP RCL AALLFGAAGALGPALQA+GVTSGYYL+NAAPY LTL+IMI+ CRPDRTL+ A Sbjct: 241 WQPLRCLWAALLFGAAGALGPALQAIGVTSGYYLYNAAPYVLTLVIMIINCRPDRTLAGA 300 Query: 387 PGELSLTR 394 PGELSLTR Sbjct: 301 PGELSLTR 308 >ref|YP_553944.1| ABC transporter inner membrane subunit [Burkholderia xenovorans LB400] gb|ABE34594.1| nucleoside ABC transporter membrane protein [Burkholderia xenovorans LB400] Length = 308 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 248/308 (80%), Positives = 270/308 (87%), Gaps = 1/308 (0%) Query: 87 PAMHDIDLTTLLLALFAGAIRVGTPFLFVSLGECLTEKGGRVNLGLEGILVCGAMTGYAA 146 P MH + LLL+LFAGAIRV TP+LFVSLGECLTEKGGRVNLGLEGILV GAM+GYA Sbjct: 2 PDMHS-PIVILLLSLFAGAIRVSTPYLFVSLGECLTEKGGRVNLGLEGILVSGAMSGYAG 60 Query: 147 SFYSGSAWLGVLAAGCAGLLLGVLHGVVCSLPRVNDIAFGIALMLLGTGLAFFLGKPFIQ 206 +F SGS W+GVLAAG GLLLG LHG+VCSLPRV+DIAFGIALMLLGTGLAF+LGKPFI+ Sbjct: 61 AFLSGSPWIGVLAAGAVGLLLGCLHGLVCSLPRVSDIAFGIALMLLGTGLAFYLGKPFIE 120 Query: 207 PQAPMLPSIDLGAWSSNDRLHHALQINALFFIGVALALVLQWGLSATRWGLALRLVGDHA 266 PQAPMLP IDLG WSS+ +LH+AL +N LF IGV LA VLQWGL TRWG+ LRLVGDHA Sbjct: 121 PQAPMLPFIDLGGWSSSPQLHNALHLNLLFVIGVVLAFVLQWGLRNTRWGMVLRLVGDHA 180 Query: 267 ETARALGYRLTGTRIAATAAGGFLAAIGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFAR 326 ETARA+GY LT RIAATA GG A +GGAYLSL YPGSWNEGLSSGQGLMAVALVIFAR Sbjct: 181 ETARAMGYPLTRVRIAATAVGGVFAGVGGAYLSLVYPGSWNEGLSSGQGLMAVALVIFAR 240 Query: 327 WQPWRCLLAALLFGAAGALGPALQAVGVTSGYYLFNAAPYALTLLIMILTCRPDRTLSSA 386 WQP RCL AALLFGAAGALGPALQA+GVTSGYYL+NAAPY LTL+IMI+ CRPDRTL+ A Sbjct: 241 WQPLRCLWAALLFGAAGALGPALQAIGVTSGYYLYNAAPYVLTLVIMIINCRPDRTLAGA 300 Query: 387 PGELSLTR 394 PGELSLTR Sbjct: 301 PGELSLTR 308 >ref|ZP_06838922.1| inner-membrane translocator [Burkholderia sp. Ch1-1] gb|EFG73368.1| inner-membrane translocator [Burkholderia sp. Ch1-1] Length = 308 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 248/308 (80%), Positives = 270/308 (87%), Gaps = 1/308 (0%) Query: 87 PAMHDIDLTTLLLALFAGAIRVGTPFLFVSLGECLTEKGGRVNLGLEGILVCGAMTGYAA 146 P MH + LLL+LFAGAIRV TP+LFVSLGECLTEKGGRVNLGLEGILV GAM+GYA Sbjct: 2 PDMHS-PVVILLLSLFAGAIRVSTPYLFVSLGECLTEKGGRVNLGLEGILVSGAMSGYAG 60 Query: 147 SFYSGSAWLGVLAAGCAGLLLGVLHGVVCSLPRVNDIAFGIALMLLGTGLAFFLGKPFIQ 206 +F SGS W+GVLAAG GLLLG LHG+VCSLPRV+DIAFGIALMLLGTGLAF+LGKPFI+ Sbjct: 61 AFLSGSPWIGVLAAGAVGLLLGCLHGLVCSLPRVSDIAFGIALMLLGTGLAFYLGKPFIE 120 Query: 207 PQAPMLPSIDLGAWSSNDRLHHALQINALFFIGVALALVLQWGLSATRWGLALRLVGDHA 266 PQAPMLP IDLG WSS+ +LH+AL +N LF IGV LA VLQWGL TRWG+ LRLVGDHA Sbjct: 121 PQAPMLPFIDLGGWSSSPQLHNALHLNLLFVIGVVLAFVLQWGLRNTRWGMVLRLVGDHA 180 Query: 267 ETARALGYRLTGTRIAATAAGGFLAAIGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFAR 326 ETARA+GY LT RIAATA GG A +GGAYLSL YPGSWNEGLSSGQGLMAVALVIFAR Sbjct: 181 ETARAMGYPLTRVRIAATAVGGVFAGVGGAYLSLVYPGSWNEGLSSGQGLMAVALVIFAR 240 Query: 327 WQPWRCLLAALLFGAAGALGPALQAVGVTSGYYLFNAAPYALTLLIMILTCRPDRTLSSA 386 WQP RCL AALLFGAAGALGPALQA+GVTSGYYL+NAAPY LTL+IMI+ CRPDRTL+ A Sbjct: 241 WQPLRCLWAALLFGAAGALGPALQAIGVTSGYYLYNAAPYVLTLVIMIINCRPDRTLAGA 300 Query: 387 PGELSLTR 394 PGELSLTR Sbjct: 301 PGELSLTR 308