BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1212.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774831.1| hypothetical protein Hsero_1407 [Herbaspiril...   227   5e-58
ref|YP_996423.1| hypothetical protein Veis_1648 [Verminephrobact...   191   3e-47
ref|YP_001888966.1| hypothetical protein Bphyt_5237 [Burkholderi...   162   1e-38
ref|ZP_06838926.1| conserved hypothetical protein [Burkholderia ...   159   1e-37
ref|YP_553940.1| hypothetical protein Bxe_B1374 [Burkholderia xe...   159   1e-37

>ref|YP_003774831.1| hypothetical protein Hsero_1407 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62923.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 125

 Score =  227 bits (578), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 115/125 (92%), Positives = 117/125 (93%)

Query: 1   MMQVNLPHVVAEVEQAFTDYEYALLINDIPAQDRWFWYAPETVRYGVGEVLLGGEAIRQY 60
           MMQVNLPHVVAEVE AF DYEYALLINDI   DRWFWYAPETVRYGVGEVLLGGEAIRQY
Sbjct: 1   MMQVNLPHVVAEVEHAFADYEYALLINDIATLDRWFWYAPETVRYGVGEVLLGGEAIRQY 60

Query: 61  RKTCTPVPASRKLHRTVVTTFGSDYATVSTEFTDHTSDRIGRQMQTWVRMDEGWRIVAAH 120
           R+ CTPVPASRKLHRTVVTTFG DYATVSTEFTDHTS+RIGRQMQTWVRM EGWRIVAAH
Sbjct: 61  RQRCTPVPASRKLHRTVVTTFGQDYATVSTEFTDHTSERIGRQMQTWVRMAEGWRIVAAH 120

Query: 121 VSLMA 125
           VSLMA
Sbjct: 121 VSLMA 125


>ref|YP_996423.1| hypothetical protein Veis_1648 [Verminephrobacter eiseniae EF01-2]
 gb|ABM57405.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
          Length = 125

 Score =  191 bits (485), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 96/124 (77%), Positives = 104/124 (83%)

Query: 1   MMQVNLPHVVAEVEQAFTDYEYALLINDIPAQDRWFWYAPETVRYGVGEVLLGGEAIRQY 60
           MM VNLP VVA+VEQAF DYE+ALLI+D+PA DRWFWYAP+ VRYGV E+LLGGEAIRQY
Sbjct: 1   MMPVNLPQVVAQVEQAFADYEHALLIHDVPALDRWFWYAPQAVRYGVAEILLGGEAIRQY 60

Query: 61  RKTCTPVPASRKLHRTVVTTFGSDYATVSTEFTDHTSDRIGRQMQTWVRMDEGWRIVAAH 120
           R+TC PV  SR+L  TVVTTFG DYATVSTEFT   SD IGRQMQ WVR D GWRIVAAH
Sbjct: 61  RQTCAPVHPSRRLQHTVVTTFGRDYATVSTEFTADDSDGIGRQMQAWVRTDAGWRIVAAH 120

Query: 121 VSLM 124
           VS M
Sbjct: 121 VSRM 124


>ref|YP_001888966.1| hypothetical protein Bphyt_5237 [Burkholderia phytofirmans PsJN]
 gb|ACD19596.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 131

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/125 (63%), Positives = 97/125 (77%), Gaps = 2/125 (1%)

Query: 2   MQVNLPHVVAEVEQAFTDYEYALLINDIPAQDRWFWYAPETVRYGVGEVLLGGEAIRQYR 61
           M++N P +VA+V  AF +YE ALL ND+ A +  FW+ PETVRYG+ E+  GGEAIR +R
Sbjct: 1   MEINQPEIVAQVHAAFIEYESALLDNDVAAMNALFWHTPETVRYGIAEIQHGGEAIRAWR 60

Query: 62  KTCTPVPASRKLHRTVVTTFGSDYATVSTEFTDHTSDRIGRQMQTWVRM--DEGWRIVAA 119
           + C PVP SRKLHRTVVTTFG+D+ATVSTEFT   +  +GRQMQTW R   DEGW+IVAA
Sbjct: 61  EHCEPVPKSRKLHRTVVTTFGTDFATVSTEFTSDATHLLGRQMQTWARFSPDEGWKIVAA 120

Query: 120 HVSLM 124
           HVSL+
Sbjct: 121 HVSLI 125


>ref|ZP_06838926.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 gb|EFG73372.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
          Length = 128

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/126 (63%), Positives = 99/126 (78%), Gaps = 2/126 (1%)

Query: 2   MQVNLPHVVAEVEQAFTDYEYALLINDIPAQDRWFWYAPETVRYGVGEVLLGGEAIRQYR 61
           M+VN P +VA+V+ AF +YE AL+ NDI A +  FW+ PETVRYG+ EV  GGEAIR +R
Sbjct: 1   MEVNQPDIVAQVQAAFVEYERALVENDIEAMNALFWHTPETVRYGIAEVQHGGEAIRAWR 60

Query: 62  KTCTPVPASRKLHRTVVTTFGSDYATVSTEFTDHTSDRIGRQMQTWVRMD--EGWRIVAA 119
           + C PVP SRKLHRTVVTTFG+D+ATVSTEFT   +  +GRQMQTW R+   +GW+IVAA
Sbjct: 61  ERCEPVPKSRKLHRTVVTTFGADFATVSTEFTSDATPLLGRQMQTWARLSPADGWKIVAA 120

Query: 120 HVSLMA 125
           HVSL+A
Sbjct: 121 HVSLIA 126


>ref|YP_553940.1| hypothetical protein Bxe_B1374 [Burkholderia xenovorans LB400]
 gb|ABE34590.1| conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 128

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/126 (63%), Positives = 99/126 (78%), Gaps = 2/126 (1%)

Query: 2   MQVNLPHVVAEVEQAFTDYEYALLINDIPAQDRWFWYAPETVRYGVGEVLLGGEAIRQYR 61
           M+VN P +VA+V+ AF +YE AL+ NDI A +  FW+ PETVRYG+ EV  GGEAIR +R
Sbjct: 1   MEVNQPDIVAQVQAAFVEYERALVENDIEAMNALFWHTPETVRYGIAEVQHGGEAIRAWR 60

Query: 62  KTCTPVPASRKLHRTVVTTFGSDYATVSTEFTDHTSDRIGRQMQTWVRMD--EGWRIVAA 119
           + C PVP SRKLHRTVVTTFG+D+ATVSTEFT   +  +GRQMQTW R+   +GW+IVAA
Sbjct: 61  ERCEPVPKSRKLHRTVVTTFGTDFATVSTEFTSDATPLLGRQMQTWARLSPADGWKIVAA 120

Query: 120 HVSLMA 125
           HVSL+A
Sbjct: 121 HVSLIA 126