BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1211.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774830.1| transcription regulator protein [Herbaspiril... 396 e-108 ref|ZP_06838927.1| transcriptional regulator, GntR family [Burkh... 275 4e-72 ref|YP_004361242.1| transcriptional regulator, GntR family [Burk... 273 1e-71 ref|YP_553939.1| GntR family transcriptional regulator [Burkhold... 272 2e-71 ref|ZP_03266228.1| transcriptional regulator, GntR family [Burkh... 270 9e-71 >ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62922.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 218/233 (93%), Positives = 226/233 (96%) Query: 1 MTVTVANPLAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGY 60 MTVT+AN LAEQVYHR+KDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGY Sbjct: 1 MTVTLANALAEQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGY 60 Query: 61 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALEKLCSQQEPTAELEQLNAIWLAEPEA 120 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAAL+KLCSQ E +AEL QLNAIWLAEP+A Sbjct: 61 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDA 120 Query: 121 RHTDAVKVAELDEAFHTNLVAAAGNVEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEH 180 R TDAVKVA+LDEAFHTNLVAAAGN EMTRVHTEVTEKIRIVRRLDFLKKKRI+ATYEEH Sbjct: 121 RQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEH 180 Query: 181 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAAAAR 233 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAA A+ Sbjct: 181 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAALAQ 233 >ref|ZP_06838927.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] gb|EFG73373.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] Length = 252 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 143/218 (65%), Positives = 169/218 (77%), Gaps = 1/218 (0%) Query: 11 EQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWK 70 EQVY ++K+DIFSFRL PGD F+E +AQ GVSRTP+RD LFRLQREGYLEVGFRRGWK Sbjct: 32 EQVYQQLKNDIFSFRLFPGDRFSENGIAQHYGVSRTPMRDGLFRLQREGYLEVGFRRGWK 91 Query: 71 VCPIDFDRLDNLYDLRIVLEMAALEKLCSQQEPT-AELEQLNAIWLAEPEARHTDAVKVA 129 V PI+FD+LD LYDLRIVLE+AA+E++ + + A +E L A+W EPE R +D VK+ Sbjct: 92 VSPINFDQLDQLYDLRIVLEVAAVERIGTGGDSAHAAVEALKAVWCVEPELRESDPVKMF 151 Query: 130 ELDEAFHTNLVAAAGNVEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEHGKILQLIAK 189 +DE FH LVAA GN EM RVH EVTE+IRIVRRLDFLK R ATY+EH +L LI + Sbjct: 152 GMDENFHRQLVAATGNAEMLRVHNEVTERIRIVRRLDFLKPHRTSATYDEHATMLNLIER 211 Query: 190 RKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEP 227 + TEA ILLRAHITQSKLEVRKIT+ MLA AR + P Sbjct: 212 NRLTEAIILLRAHITQSKLEVRKITLSMLAAARDSKLP 249 >ref|YP_004361242.1| transcriptional regulator, GntR family [Burkholderia gladioli BSR3] gb|AEA61286.1| transcriptional regulator, GntR family [Burkholderia gladioli BSR3] Length = 245 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 147/226 (65%), Positives = 175/226 (77%), Gaps = 1/226 (0%) Query: 3 VTVANPLAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLE 62 V ANPLAEQVY ++K DIF FRLLPGD F+ET++A+ GVSRTP+RD LFRLQREGYLE Sbjct: 17 VNRANPLAEQVYQQLKSDIFGFRLLPGDRFSETDIARHYGVSRTPMRDGLFRLQREGYLE 76 Query: 63 VGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALEKLCSQQEPTAE-LEQLNAIWLAEPEAR 121 VGFRRGWKV PIDF +LD LY+LRIVLE+AA+E+L + A+ L L+A W PEAR Sbjct: 77 VGFRRGWKVAPIDFAQLDQLYELRIVLELAAIERLTAGAGNWADALATLHATWCVAPEAR 136 Query: 122 HTDAVKVAELDEAFHTNLVAAAGNVEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEHG 181 TD ++ +DEAFH LVAA GN EM RVH EVTE+IRIVRRLDFLK R ATYEEH Sbjct: 137 ETDPAEMFRMDEAFHRQLVAATGNAEMLRVHNEVTERIRIVRRLDFLKAHRTSATYEEHA 196 Query: 182 KILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEP 227 K+++L+ + EA +LLRAHITQS+LEVRKIT+ MLAEAR + P Sbjct: 197 KMIRLLERGAIAEAGMLLRAHITQSRLEVRKITLSMLAEARGSKLP 242 >ref|YP_553939.1| GntR family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE34589.1| transcriptional regulator, GntR family [Burkholderia xenovorans LB400] Length = 252 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 141/218 (64%), Positives = 168/218 (77%), Gaps = 1/218 (0%) Query: 11 EQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWK 70 EQVY ++K+DIFSFRL PGD F+E +AQ GVSRTP+RD LFRLQREGYLEVGFRRGWK Sbjct: 32 EQVYQQLKNDIFSFRLFPGDRFSENGIAQHYGVSRTPMRDGLFRLQREGYLEVGFRRGWK 91 Query: 71 VCPIDFDRLDNLYDLRIVLEMAALEKLCSQQEPT-AELEQLNAIWLAEPEARHTDAVKVA 129 V PI+FD+LD LYDLRIVLE+AA+E++ + + A +E L A+W EPE R +D VK+ Sbjct: 92 VSPINFDQLDQLYDLRIVLEVAAVERIGTGGDSAHAAVEALKAVWCVEPELRESDPVKMF 151 Query: 130 ELDEAFHTNLVAAAGNVEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEHGKILQLIAK 189 +DE FH LVAA GN EM RVH EV E+IRIVRRLDFLK R ATY+EH +L LI + Sbjct: 152 GMDENFHRQLVAATGNAEMLRVHNEVAERIRIVRRLDFLKPHRTSATYDEHATMLNLIER 211 Query: 190 RKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEP 227 + TEA ILLRAH+TQSKLEVRKIT+ MLA AR + P Sbjct: 212 NRLTEAIILLRAHVTQSKLEVRKITLSMLAAARDSKLP 249 >ref|ZP_03266228.1| transcriptional regulator, GntR family [Burkholderia sp. H160] gb|EEA02167.1| transcriptional regulator, GntR family [Burkholderia sp. H160] Length = 245 Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats. Identities = 146/225 (64%), Positives = 166/225 (73%), Gaps = 2/225 (0%) Query: 3 VTVANPLAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLE 62 V ANPLAEQVY IK DIFSFRL PGD F+E ++AQ GVSRTP+RDALFRL REGYL Sbjct: 20 VYSANPLAEQVYQLIKQDIFSFRLFPGDRFSENDIAQHYGVSRTPMRDALFRLAREGYLV 79 Query: 63 VGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALEKLCSQQEPTAELEQLNAIWLAEPEARH 122 VGFRRGWKVC IDF++LD LYDLRIVLE+AALE+L P ++ L AIW + R Sbjct: 80 VGFRRGWKVCDIDFNQLDQLYDLRIVLELAALERLSGA--PHDAMDALRAIWCVDERERE 137 Query: 123 TDAVKVAELDEAFHTNLVAAAGNVEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEHGK 182 + + LDE FH LV+AAGN EM RVH EVTE+IRIVRRLDFLK R ATY+EH Sbjct: 138 SRPATMFVLDEGFHRGLVSAAGNNEMLRVHNEVTERIRIVRRLDFLKAHRTSATYDEHSA 197 Query: 183 ILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEP 227 +L LI + K EA ILLRAHITQSKLEVRKIT+ MLA AR + P Sbjct: 198 MLHLIDRGKFGEAAILLRAHITQSKLEVRKITLSMLATARNEKLP 242