BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1202.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774822.1| ATP-dependent Clp protease adaptor protein [...   204   5e-51
ref|ZP_08274165.1| ATP-dependent Clp protease adaptor protein Cl...   179   1e-43
ref|YP_004753913.1| ATP-dependent Clp protease adaptor protein c...   178   3e-43
ref|YP_001354205.1| ATP-dependent Clp protease adaptor protein C...   172   2e-41
ref|YP_001100697.1| ATP-dependent Clp protease adaptor protein C...   171   3e-41

>ref|YP_003774822.1| ATP-dependent Clp protease adaptor protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62914.1| ATP-dependent Clp protease adaptor protein [Herbaspirillum
           seropedicae SmR1]
          Length = 104

 Score =  204 bits (518), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 103/104 (99%), Positives = 104/104 (100%)

Query: 1   MATKHENDGGTVLERQEAKLKPPPMYQVLLLNDDYTPMEFVVAVIQQYFNKDRETATQIM 60
           MATKHENDGGTVLERQE+KLKPPPMYQVLLLNDDYTPMEFVVAVIQQYFNKDRETATQIM
Sbjct: 1   MATKHENDGGTVLERQESKLKPPPMYQVLLLNDDYTPMEFVVAVIQQYFNKDRETATQIM 60

Query: 61  LKVHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQCVMEEA 104
           LKVHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQCVMEEA
Sbjct: 61  LKVHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQCVMEEA 104


>ref|ZP_08274165.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF32362.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 102

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 93/104 (89%), Positives = 95/104 (91%), Gaps = 2/104 (1%)

Query: 1   MATKHENDGGTVLERQEAKLKPPPMYQVLLLNDDYTPMEFVVAVIQQYFNKDRETATQIM 60
           MATKHEN  GTVL RQ  KLKPP MYQV LLNDDYTPMEFVVA+IQ+YFNKDRE ATQIM
Sbjct: 1   MATKHEN--GTVLVRQTQKLKPPSMYQVYLLNDDYTPMEFVVAIIQEYFNKDRENATQIM 58

Query: 61  LKVHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQCVMEEA 104
           L VHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQCVMEEA
Sbjct: 59  LMVHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQCVMEEA 102


>ref|YP_004753913.1| ATP-dependent Clp protease adaptor protein clpS [Collimonas
           fungivorans Ter331]
 gb|AEK63090.1| ATP-dependent Clp protease adaptor protein clpS [Collimonas
           fungivorans Ter331]
          Length = 102

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/104 (87%), Positives = 96/104 (92%), Gaps = 2/104 (1%)

Query: 1   MATKHENDGGTVLERQEAKLKPPPMYQVLLLNDDYTPMEFVVAVIQQYFNKDRETATQIM 60
           M TKHE+  GTV  RQE KLKPPPMYQV LLNDDYTPMEFVVA++Q+YFNKDRE ATQIM
Sbjct: 1   MVTKHED--GTVATRQEQKLKPPPMYQVFLLNDDYTPMEFVVAILQEYFNKDREAATQIM 58

Query: 61  LKVHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQCVMEEA 104
           LKVHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQC+MEEA
Sbjct: 59  LKVHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQCMMEEA 102


>ref|YP_001354205.1| ATP-dependent Clp protease adaptor protein ClpS [Janthinobacterium
           sp. Marseille]
 sp|A6T108|CLPS_JANMA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 gb|ABR91602.1| ATP-dependent Clp protease adaptor protein ClpS [Janthinobacterium
           sp. Marseille]
          Length = 102

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/103 (85%), Positives = 93/103 (90%), Gaps = 2/103 (1%)

Query: 1   MATKHENDGGTVLERQEAKLKPPPMYQVLLLNDDYTPMEFVVAVIQQYFNKDRETATQIM 60
           MA KH  D GTVL RQE KLKPP MYQVLLLNDDYTPMEFVV ++Q+YF+KDRETATQIM
Sbjct: 1   MAIKH--DDGTVLMRQEQKLKPPSMYQVLLLNDDYTPMEFVVLILQEYFSKDRETATQIM 58

Query: 61  LKVHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQCVMEE 103
           L VHRDGKG+CGVYPKDIASTKVELVL HARKAGHPLQCVMEE
Sbjct: 59  LMVHRDGKGICGVYPKDIASTKVELVLNHARKAGHPLQCVMEE 101


>ref|YP_001100697.1| ATP-dependent Clp protease adaptor protein ClpS [Herminiimonas
           arsenicoxydans]
 sp|A4G7T9|CLPS_HERAR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
 emb|CAL62576.1| ATP-dependent Clp protease adaptor protein ClpS [Herminiimonas
           arsenicoxydans]
          Length = 102

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/103 (85%), Positives = 93/103 (90%), Gaps = 2/103 (1%)

Query: 1   MATKHENDGGTVLERQEAKLKPPPMYQVLLLNDDYTPMEFVVAVIQQYFNKDRETATQIM 60
           MA KH  D GTVL RQE KLKPP MYQVLLLNDDYTPMEFVV ++Q+YF+KDRETATQIM
Sbjct: 1   MAIKH--DDGTVLMRQEQKLKPPSMYQVLLLNDDYTPMEFVVMILQEYFSKDRETATQIM 58

Query: 61  LKVHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQCVMEE 103
           L VHRDGKG+CGVYPKDIASTKVELVL HARKAGHPLQCVMEE
Sbjct: 59  LMVHRDGKGICGVYPKDIASTKVELVLNHARKAGHPLQCVMEE 101