BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1201.p (67 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001100698.1| RNA chaperone [Herminiimonas arsenicoxydans]... 117 7e-25 ref|YP_003774821.1| cold-shock DNA-binding domain-containing pro... 114 5e-24 ref|YP_560188.1| cold-shock DNA-binding protein family protein [... 113 9e-24 ref|ZP_04579607.1| cold-shock DNA-binding domain-containing prot... 112 2e-23 ref|YP_748234.1| cold-shock DNA-binding domain-containing protei... 112 2e-23 >ref|YP_001100698.1| RNA chaperone [Herminiimonas arsenicoxydans] ref|YP_001354206.1| cold-shock DNA-binding domain-containing protein [Janthinobacterium sp. Marseille] ref|ZP_08274166.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480] ref|YP_004753914.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Collimonas fungivorans Ter331] emb|CAL62577.1| Cold shock-like protein CspD (CSP-D) [Herminiimonas arsenicoxydans] gb|ABR91772.1| cold-shock DNA-binding domain protein [Janthinobacterium sp. Marseille] gb|EGF32363.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480] gb|AEK63091.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Collimonas fungivorans Ter331] Length = 67 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 66/67 (98%), Positives = 67/67 (100%) Query: 1 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQF+VTQGPKGKQ Sbjct: 1 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPKGKQ 60 Query: 61 ASNIQAP 67 ASNIQAP Sbjct: 61 ASNIQAP 67 >ref|YP_003774821.1| cold-shock DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ62913.1| cold-shock DNA-binding domain protein [Herbaspirillum seropedicae SmR1] Length = 68 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 65/65 (100%), Positives = 65/65 (100%) Query: 1 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ Sbjct: 1 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60 Query: 61 ASNIQ 65 ASNIQ Sbjct: 61 ASNIQ 65 >ref|YP_560188.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] ref|YP_001896783.1| cold-shock DNA-binding domain-containing protein [Burkholderia phytofirmans PsJN] ref|ZP_03266301.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] ref|YP_003605974.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] ref|ZP_06840009.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] ref|YP_003907994.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] ref|YP_004229286.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gb|ABE32136.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] gb|ACD17559.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gb|EEA02129.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gb|ADG16463.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gb|EFG72291.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gb|ADN58703.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] gb|ADX56226.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 68 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 62/67 (92%), Positives = 65/67 (97%) Query: 1 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60 MATGTVKWFND+KGFGFITPD+GGEDLFAHFSAIQMNGFKTLKEGQKV F+V QGPKGKQ Sbjct: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQMNGFKTLKEGQKVTFEVVQGPKGKQ 60 Query: 61 ASNIQAP 67 ASNIQAP Sbjct: 61 ASNIQAP 67 >ref|ZP_04579607.1| cold-shock DNA-binding domain-containing protein [Oxalobacter formigenes OXCC13] gb|EEO30580.1| cold-shock DNA-binding domain-containing protein [Oxalobacter formigenes OXCC13] Length = 67 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 62/66 (93%), Positives = 65/66 (98%) Query: 1 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60 MATGTVKWFNDSKGFGFITP+DGGEDLFAHFSAI MNGFKTLKEGQKVQF+VTQGPKGKQ Sbjct: 1 MATGTVKWFNDSKGFGFITPEDGGEDLFAHFSAINMNGFKTLKEGQKVQFEVTQGPKGKQ 60 Query: 61 ASNIQA 66 ASNIQ+ Sbjct: 61 ASNIQS 66 >ref|YP_748234.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas eutropha C91] gb|ABI60269.1| cold-shock DNA-binding protein family [Nitrosomonas eutropha C91] Length = 67 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 62/67 (92%), Positives = 64/67 (95%) Query: 1 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60 MATGTVKWFNDSKGFGFITPDDG EDLFAHFSAI M+GFKTLKEGQKV F+VTQGPKGKQ Sbjct: 1 MATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMSGFKTLKEGQKVSFEVTQGPKGKQ 60 Query: 61 ASNIQAP 67 ASNIQAP Sbjct: 61 ASNIQAP 67