BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1200.p         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02376764.1| hypothetical protein BuboB_03504 [Burkholderi...    80   1e-13
ref|YP_158043.1| hypothetical protein ebA1872 [Aromatoleum aroma...    68   5e-10
ref|YP_002407236.1| hypothetical protein ECIAI39_1228 [Escherich...    61   5e-08
ref|YP_001452729.1| hypothetical protein CKO_01153 [Citrobacter ...    60   1e-07
ref|ZP_02808127.1| conserved hypothetical protein [Escherichia c...    59   3e-07

>ref|ZP_02376764.1| hypothetical protein BuboB_03504 [Burkholderia ubonensis Bu]
          Length = 97

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 48/68 (70%)

Query: 4  LRSLDVRSLLAFGALRNVKLDFLTFFQGLEAVHLDCGEVSEQIFAAVIRSDKAKAFGIIE 63
          L+ LDVR LL F AL +VK D L   +GLEA  L+ GEV EQ+FAAV+R D+AK   I++
Sbjct: 21 LQRLDVRCLLPFRALFDVKTDLLALLKGLEAASLNLGEVREQVFAAVVRRDEAKTLRIVK 80

Query: 64 PLDSTCCH 71
          PLD T CH
Sbjct: 81 PLDGTGCH 88


>ref|YP_158043.1| hypothetical protein ebA1872 [Aromatoleum aromaticum EbN1]
 emb|CAI07142.1| hypothetical protein ebA1872 [Aromatoleum aromaticum EbN1]
          Length = 102

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 8  DVRSLLAFGALRNVKLDFLTFFQGLEAVHLDCGEVSEQIFAAVIRSDKAKAFGIIEPLDS 67
          DVR LLA     +V+ D L F QGLE + LD GE+ E+I A   RSD+ +A G++EPL  
Sbjct: 17 DVRRLLALRTGGDVEADALAFGQGLETLSLDRGEMREKIVATAFRSDETEALGVVEPLYG 76

Query: 68 TCCH 71
          TCCH
Sbjct: 77 TCCH 80


>ref|YP_002407236.1| hypothetical protein ECIAI39_1228 [Escherichia coli IAI39]
 emb|CAR17362.1| conserved hypothetical protein [Escherichia coli IAI39]
          Length = 194

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 9   VRSLLAFGALRNVKLDFLTFFQGLEAVHLDCGEVSEQIFAAVIRSDKAKAFGIIEPLDST 68
           V S   F A+ N +L+ LTF Q  EA+ LD GEV E +FAA+ RS++AK F ++EPL+ T
Sbjct: 117 VNSCRTFLAVLNFELNVLTFSQSFEAITLDSGEVYEHVFAAISRSNEAKTFRLVEPLNLT 176

Query: 69  --CCH 71
              CH
Sbjct: 177 FNLCH 181


>ref|YP_001452729.1| hypothetical protein CKO_01153 [Citrobacter koseri ATCC BAA-895]
 gb|ABV12294.1| hypothetical protein CKO_01153 [Citrobacter koseri ATCC BAA-895]
          Length = 95

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 9  VRSLLAFGALRNVKLDFLTFFQGLEAVHLDCGEVSEQIFAAVIRSDKAKAFGIIEPLDST 68
          V S   F A+ N +L+ L F QG EAV LD GEV E IFAA+ RS++AK F ++EPL+ T
Sbjct: 18 VNSSRTFLAVLNFELNVLAFSQGFEAVTLDSGEVYEHIFAAISRSNEAKTFRLVEPLNLT 77

Query: 69 --CCH 71
             CH
Sbjct: 78 FNLCH 82


>ref|ZP_02808127.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
          EC4076]
 ref|YP_001724786.1| hypothetical protein EcolC_1809 [Escherichia coli ATCC 8739]
 gb|ACA77459.1| conserved hypothetical protein [Escherichia coli ATCC 8739]
 gb|EDU68437.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
          EC4076]
          Length = 95

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 9  VRSLLAFGALRNVKLDFLTFFQGLEAVHLDCGEVSEQIFAAVIRSDKAKAFGIIEPLDST 68
          V S   F A+ N +L+ LTF Q  EA+ LD GEV E +FAA+ RS++AK F ++EPL+ T
Sbjct: 18 VNSCRTFLAVLNFELNVLTFSQSFEAITLDSGEVYEHVFAAISRSNEAKTFRLVEPLNLT 77

Query: 69 --CCH 71
             CH
Sbjct: 78 FNLCH 82