BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1198.p (186 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774819.1| 16S rRNA uridine-516 pseudouridylate synthas... 303 7e-81 ref|YP_001354207.1| pseudouridylate synthase family protein [Jan... 274 6e-72 ref|YP_001100699.1| putative pseudouridylate synthase [Herminiim... 269 1e-70 ref|YP_004753916.1| putative Pseudouridylate synthase [Collimona... 256 1e-66 ref|ZP_08275183.1| putative Pseudouridylate synthase [Oxalobacte... 234 4e-60 >ref|YP_003774819.1| 16S rRNA uridine-516 pseudouridylate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ62911.1| 16S rRNA uridine-516 pseudouridylate synthase protein [Herbaspirillum seropedicae SmR1] Length = 188 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 163/185 (88%), Positives = 172/185 (92%) Query: 1 MPLILFNKPFGVMSQFSAHPERQTLADYLDLPDIYPAGRLDADSEGLLLLTDDGKLQHAI 60 MPLIL NKPF VMSQFSAHPERQTLADY+D+P++YPAGRLDADSEGLLLLTDDGKLQHAI Sbjct: 1 MPLILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAI 60 Query: 61 AHPRRKQPKTYLAQVEGLATPEALQRLRNPLDLGDFVTQPGEARLIQEPAWMWPRTPPIR 120 AHPRRK PKTYLAQVEG +PEAL +LR PLDLGDFVTQ +ARLIQEP WMWPR PPIR Sbjct: 61 AHPRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIQEPGWMWPRNPPIR 120 Query: 121 QRANQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPLMPGEWREVD 180 QR NQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHP+MPGEWREVD Sbjct: 121 QRQNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREVD 180 Query: 181 PQELD 185 P EL+ Sbjct: 181 PLELE 185 >ref|YP_001354207.1| pseudouridylate synthase family protein [Janthinobacterium sp. Marseille] gb|ABR89276.1| pseudouridylate synthase family protein [Janthinobacterium sp. Marseille] Length = 211 Score = 274 bits (700), Expect = 6e-72, Method: Composition-based stats. Identities = 135/184 (73%), Positives = 153/184 (83%) Query: 1 MPLILFNKPFGVMSQFSAHPERQTLADYLDLPDIYPAGRLDADSEGLLLLTDDGKLQHAI 60 MPLILFNKPF M QFS HP R++LAD++D+P+IYPAGRLDADSEGLLLL DDGKLQHAI Sbjct: 25 MPLILFNKPFQTMCQFSPHPTRKSLADHIDIPNIYPAGRLDADSEGLLLLNDDGKLQHAI 84 Query: 61 AHPRRKQPKTYLAQVEGLATPEALQRLRNPLDLGDFVTQPGEARLIQEPAWMWPRTPPIR 120 +HP RK KTYL QVEG+ +AL RLR PLDLGDFVTQ E + + EP W+WPR PPIR Sbjct: 85 SHPDRKHTKTYLVQVEGVPDADALARLRAPLDLGDFVTQECEVKRVAEPDWLWPRNPPIR 144 Query: 121 QRANQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPLMPGEWREVD 180 +RAN PTSW+A+T+SEGKNRQVRRMT AVG PTLRLVRIAIGP SL +HPL PGEWRE+ Sbjct: 145 ERANAPTSWLAITLSEGKNRQVRRMTGAVGYPTLRLVRIAIGPVSLQSHPLWPGEWREIS 204 Query: 181 PQEL 184 EL Sbjct: 205 VAEL 208 >ref|YP_001100699.1| putative pseudouridylate synthase [Herminiimonas arsenicoxydans] emb|CAL62578.1| Ribosomal large subunit pseudouridine synthase E (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) [Herminiimonas arsenicoxydans] Length = 186 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 138/184 (75%), Positives = 156/184 (84%) Query: 1 MPLILFNKPFGVMSQFSAHPERQTLADYLDLPDIYPAGRLDADSEGLLLLTDDGKLQHAI 60 M LILFNKPF VM QFS HP R +LADYLD+PDIYPAGRLDADSEGLLLLTDDGKLQHAI Sbjct: 1 MSLILFNKPFQVMCQFSPHPTRASLADYLDIPDIYPAGRLDADSEGLLLLTDDGKLQHAI 60 Query: 61 AHPRRKQPKTYLAQVEGLATPEALQRLRNPLDLGDFVTQPGEARLIQEPAWMWPRTPPIR 120 +HP KQ KTYLAQVEG+ EAL RLR PL+LGDF+TQ E + +QEP W+WPR PPIR Sbjct: 61 SHPDHKQTKTYLAQVEGIPHTEALARLRAPLNLGDFITQGCEVKRVQEPDWLWPRNPPIR 120 Query: 121 QRANQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPLMPGEWREVD 180 +RA PTSW+A+T++EGKNRQVRRMT AVGLPTLRL+RIAIGP SL +HPL+PG+WREV Sbjct: 121 ERAQVPTSWLAITLAEGKNRQVRRMTGAVGLPTLRLIRIAIGPISLQSHPLLPGQWREVS 180 Query: 181 PQEL 184 EL Sbjct: 181 AAEL 184 >ref|YP_004753916.1| putative Pseudouridylate synthase [Collimonas fungivorans Ter331] gb|AEK63093.1| putative Pseudouridylate synthase [Collimonas fungivorans Ter331] Length = 197 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 133/184 (72%), Positives = 156/184 (84%) Query: 1 MPLILFNKPFGVMSQFSAHPERQTLADYLDLPDIYPAGRLDADSEGLLLLTDDGKLQHAI 60 M LILFNKPF VM QFSAHP R TLADY+ +PDIYPAGRLDADSEGLLLLTDDG+LQH I Sbjct: 9 MSLILFNKPFQVMCQFSAHPGRPTLADYIKIPDIYPAGRLDADSEGLLLLTDDGQLQHNI 68 Query: 61 AHPRRKQPKTYLAQVEGLATPEALQRLRNPLDLGDFVTQPGEARLIQEPAWMWPRTPPIR 120 +HP KQPKTY+AQVEG+ T L+RLR+ +DLGDF ++P +AR I+EP W+WPR PPIR Sbjct: 69 SHPAVKQPKTYMAQVEGVPTEVLLERLRHGVDLGDFRSKPCQARQIEEPDWLWPRDPPIR 128 Query: 121 QRANQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPLMPGEWREVD 180 QR ++PTSW+ALT++EGKNRQVRRMTAAVGLPTLRLVR+AIG SL +HPL PGE +D Sbjct: 129 QRQDKPTSWLALTLTEGKNRQVRRMTAAVGLPTLRLVRVAIGQVSLQSHPLWPGESLAID 188 Query: 181 PQEL 184 P +L Sbjct: 189 PADL 192 >ref|ZP_08275183.1| putative Pseudouridylate synthase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31346.1| putative Pseudouridylate synthase [Oxalobacteraceae bacterium IMCC9480] Length = 189 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 123/186 (66%), Positives = 145/186 (77%) Query: 1 MPLILFNKPFGVMSQFSAHPERQTLADYLDLPDIYPAGRLDADSEGLLLLTDDGKLQHAI 60 M LILFNKP+ V+ QFS R+TLAD+L +PDIYPAGRLDADSEGL+LLTDDG+LQH I Sbjct: 1 MALILFNKPYLVLCQFSPQAGRRTLADHLAIPDIYPAGRLDADSEGLMLLTDDGRLQHDI 60 Query: 61 AHPRRKQPKTYLAQVEGLATPEALQRLRNPLDLGDFVTQPGEARLIQEPAWMWPRTPPIR 120 + P KQPK YL Q+EG+ P AL LR + LGDF ++ + + PAW+WPR PPIR Sbjct: 61 SDPTHKQPKAYLVQIEGIPDPVALNTLRTGVFLGDFTSKAAKVIEVATPAWLWPRNPPIR 120 Query: 121 QRANQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPLMPGEWREVD 180 QRA PT W+ LTI+EGKNRQVRRMTAAVGLPTLRLVR+AIGP+SL +HPL+PGE R VD Sbjct: 121 QRAVTPTRWLLLTITEGKNRQVRRMTAAVGLPTLRLVRVAIGPYSLESHPLLPGESRVVD 180 Query: 181 PQELDA 186 EL A Sbjct: 181 AAELTA 186