BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1197.p         (181 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774818.1| signal peptide protein [Herbaspirillum serop...   246   1e-63
ref|YP_004753918.1| exported protein [Collimonas fungivorans Ter...   205   2e-51
ref|YP_001354208.1| hypothetical protein mma_2518 [Janthinobacte...   198   2e-49
ref|YP_001100700.1| hypothetical protein HEAR2450 [Herminiimonas...   194   5e-48
emb|CAL62579.2| Conserved hypothetical protein [Herminiimonas ar...   194   5e-48

>ref|YP_003774818.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62910.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  246 bits (627), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 127/153 (83%), Positives = 136/153 (88%), Gaps = 3/153 (1%)

Query: 30  HPIMRRF-RPLVTLLATLATVAAALPGQAQQLQKFPTTQLNIGIHLIKAEVAQTEAEREQ 88
           HP+ R F R   TLLA LA  ++A   Q  Q++KFPTTQLNIGIHLIKAEVA+TEAEREQ
Sbjct: 4   HPLSRFFVRSAATLLA-LACFSSA-QAQTPQVRKFPTTQLNIGIHLIKAEVAKTEAEREQ 61

Query: 89  GLMFREKMGDNEGMLFLFGQPAGVCMWMKNTLIPLSVAFMDEKGVIINIEEMKEQTLDSH 148
           GLMFREKMGDNEGMLFLF QPAGVCMWMKNTLIPLSVAFMDEKGVIINIE+MK QTLDSH
Sbjct: 62  GLMFREKMGDNEGMLFLFEQPAGVCMWMKNTLIPLSVAFMDEKGVIINIEDMKAQTLDSH 121

Query: 149 CAKRAAVYALEMNKGWFKQKNIKPGTVIEGLPR 181
           CAKRAAVYALEMNKGWFKQKNI+PG+ IEGLPR
Sbjct: 122 CAKRAAVYALEMNKGWFKQKNIQPGSQIEGLPR 154


>ref|YP_004753918.1| exported protein [Collimonas fungivorans Ter331]
 gb|AEK63095.1| exported protein [Collimonas fungivorans Ter331]
          Length = 153

 Score =  205 bits (521), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/125 (76%), Positives = 112/125 (89%)

Query: 57  AQQLQKFPTTQLNIGIHLIKAEVAQTEAEREQGLMFREKMGDNEGMLFLFGQPAGVCMWM 116
           AQ++Q+ P T LNIGIH+IKAEVA++E +REQGLMFR+KMG NEGM+F+F  PAG+CMWM
Sbjct: 28  AQEIQQLPVTPLNIGIHVIKAEVARSEDQREQGLMFRKKMGANEGMVFVFETPAGICMWM 87

Query: 117 KNTLIPLSVAFMDEKGVIINIEEMKEQTLDSHCAKRAAVYALEMNKGWFKQKNIKPGTVI 176
           KNTLIPLSVAF+D KG I+N+EEMK QTLDSHCA+ AA YALEMNKGWFK KNIKPGTVI
Sbjct: 88  KNTLIPLSVAFIDAKGAILNVEEMKAQTLDSHCAQGAASYALEMNKGWFKDKNIKPGTVI 147

Query: 177 EGLPR 181
           +GLP+
Sbjct: 148 QGLPQ 152


>ref|YP_001354208.1| hypothetical protein mma_2518 [Janthinobacterium sp. Marseille]
 gb|ABR90185.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 151

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 93/149 (62%), Positives = 112/149 (75%)

Query: 33  MRRFRPLVTLLATLATVAAALPGQAQQLQKFPTTQLNIGIHLIKAEVAQTEAEREQGLMF 92
           M +F         LA+  +A    AQQ +KFP   L  G+++IKAEV   EAER+QGLMF
Sbjct: 1   MNKFLSTCVATIALASTLSAGSSYAQQDKKFPVISLTAGMNIIKAEVVANEAERQQGLMF 60

Query: 93  REKMGDNEGMLFLFGQPAGVCMWMKNTLIPLSVAFMDEKGVIINIEEMKEQTLDSHCAKR 152
           R  MG NEGM+FLFG PAGVCMWMKNTLIPLSVAF+D  G I+NIE+MK Q+LDSHC+KR
Sbjct: 61  RPSMGQNEGMVFLFGAPAGVCMWMKNTLIPLSVAFIDADGKIVNIEDMKPQSLDSHCSKR 120

Query: 153 AAVYALEMNKGWFKQKNIKPGTVIEGLPR 181
              YALEMN+GWFK KN+KPG++IEGLP+
Sbjct: 121 PVPYALEMNEGWFKHKNLKPGSIIEGLPK 149


>ref|YP_001100700.1| hypothetical protein HEAR2450 [Herminiimonas arsenicoxydans]
          Length = 151

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 89/128 (69%), Positives = 104/128 (81%)

Query: 54  PGQAQQLQKFPTTQLNIGIHLIKAEVAQTEAEREQGLMFREKMGDNEGMLFLFGQPAGVC 113
           P  AQ  QKFP   L  G+H+IKAEV  TEAER+QGLMFRE M  NEGM+FLFG PAGVC
Sbjct: 22  PASAQPGQKFPVIPLTAGMHVIKAEVVATEAERQQGLMFRESMAQNEGMVFLFGAPAGVC 81

Query: 114 MWMKNTLIPLSVAFMDEKGVIINIEEMKEQTLDSHCAKRAAVYALEMNKGWFKQKNIKPG 173
           MWMKNTLIPLSVAF+D+ G I+NIE MK  +L+SHC+K+   YALEMN+GWFKQKNIKPG
Sbjct: 82  MWMKNTLIPLSVAFIDDDGKIVNIENMKPHSLESHCSKKPVRYALEMNEGWFKQKNIKPG 141

Query: 174 TVIEGLPR 181
           + I+GLP+
Sbjct: 142 STIDGLPK 149


>emb|CAL62579.2| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 171

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 89/128 (69%), Positives = 104/128 (81%)

Query: 54  PGQAQQLQKFPTTQLNIGIHLIKAEVAQTEAEREQGLMFREKMGDNEGMLFLFGQPAGVC 113
           P  AQ  QKFP   L  G+H+IKAEV  TEAER+QGLMFRE M  NEGM+FLFG PAGVC
Sbjct: 42  PASAQPGQKFPVIPLTAGMHVIKAEVVATEAERQQGLMFRESMAQNEGMVFLFGAPAGVC 101

Query: 114 MWMKNTLIPLSVAFMDEKGVIINIEEMKEQTLDSHCAKRAAVYALEMNKGWFKQKNIKPG 173
           MWMKNTLIPLSVAF+D+ G I+NIE MK  +L+SHC+K+   YALEMN+GWFKQKNIKPG
Sbjct: 102 MWMKNTLIPLSVAFIDDDGKIVNIENMKPHSLESHCSKKPVRYALEMNEGWFKQKNIKPG 161

Query: 174 TVIEGLPR 181
           + I+GLP+
Sbjct: 162 STIDGLPK 169