BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1196.p         (88 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08273669.1| SSU ribosomal protein S20p [Oxalobacteraceae ...    82   3e-14
ref|YP_004753919.1| 30S ribosomal protein S20p [Collimonas fungi...    78   4e-13
ref|YP_296970.1| 30S ribosomal protein S20 [Ralstonia eutropha J...    76   2e-12
ref|YP_002889657.1| 30S ribosomal protein S20 [Thauera sp. MZ1T]...    75   3e-12
ref|YP_003166410.1| 30S ribosomal protein S20 [Candidatus Accumu...    75   4e-12

>ref|ZP_08273669.1| SSU ribosomal protein S20p [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32860.1| SSU ribosomal protein S20p [Oxalobacteraceae bacterium IMCC9480]
          Length = 87

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 78/87 (89%), Positives = 81/87 (93%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIAAGDKAAATSVFQSSVSTIDS 60
          MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKA+RKAI  GDKA AT VFQSS+S ID 
Sbjct: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAIRKAIEGGDKAVATQVFQSSISVIDR 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALA 87
          IADKKIIHKNKAARHKSR+AAALKALA
Sbjct: 61 IADKKIIHKNKAARHKSRMAAALKALA 87


>ref|YP_004753919.1| 30S ribosomal protein S20p [Collimonas fungivorans Ter331]
 gb|AEK63096.1| SSU ribosomal protein S20p [Collimonas fungivorans Ter331]
          Length = 89

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 76/88 (86%), Positives = 79/88 (89%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIAAGDKAAATSVFQSSVSTIDS 60
          MANTAQARKRARQAV+QN HNSSQRSTLRTAIKA RKAI  GDKAAA  V Q+SVSTID 
Sbjct: 1  MANTAQARKRARQAVQQNLHNSSQRSTLRTAIKAARKAITGGDKAAAALVLQTSVSTIDR 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALAA 88
          IADKKIIHKNKAARHKSRL AALKAL+A
Sbjct: 61 IADKKIIHKNKAARHKSRLNAALKALSA 88


>ref|YP_296970.1| 30S ribosomal protein S20 [Ralstonia eutropha JMP134]
 sp|Q46XK7|RS20_RALEJ RecName: Full=30S ribosomal protein S20
 gb|AAZ62126.1| SSU ribosomal protein S20P [Ralstonia eutropha JMP134]
          Length = 88

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 71/88 (80%), Positives = 81/88 (92%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIAAGDKAAATSVFQSSVSTIDS 60
          MAN+AQARKRARQAV QNAHNSS RS LRTA+KAVRKAI AGDKAAA  +F++S +TIDS
Sbjct: 1  MANSAQARKRARQAVAQNAHNSSLRSRLRTAVKAVRKAIDAGDKAAAAEIFKNSQATIDS 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALAA 88
          IADKKI+HKNKAARHKSRL+AA+KA+AA
Sbjct: 61 IADKKIVHKNKAARHKSRLSAAIKAMAA 88


>ref|YP_002889657.1| 30S ribosomal protein S20 [Thauera sp. MZ1T]
 gb|ACR01280.1| ribosomal protein S20 [Thauera sp. MZ1T]
          Length = 88

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 72/88 (81%), Positives = 80/88 (90%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIAAGDKAAATSVFQSSVSTIDS 60
          MAN+AQARKRARQA K  AHN+S RS LRTAIKAVRKAI  GDKAAA SVF++S+STIDS
Sbjct: 1  MANSAQARKRARQATKARAHNASLRSRLRTAIKAVRKAIVGGDKAAAQSVFRTSMSTIDS 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALAA 88
          IADKKIIHKNKAARHKSRL+AA+KA+AA
Sbjct: 61 IADKKIIHKNKAARHKSRLSAAVKAMAA 88


>ref|YP_003166410.1| 30S ribosomal protein S20 [Candidatus Accumulibacter phosphatis
          clade IIA str. UW-1]
 gb|ACV34481.1| ribosomal protein S20 [Candidatus Accumulibacter phosphatis clade
          IIA str. UW-1]
          Length = 88

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 71/88 (80%), Positives = 79/88 (89%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIAAGDKAAATSVFQSSVSTIDS 60
          MAN+AQARKRARQAVKQ AHN+S RSTLRTA+K V+KAI AGDKAAA S+F+ SVSTID 
Sbjct: 1  MANSAQARKRARQAVKQRAHNASLRSTLRTAVKRVQKAIVAGDKAAAQSIFRESVSTIDR 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALAA 88
          IADKKIIHKNKA+RHKSRLAA +K LAA
Sbjct: 61 IADKKIIHKNKASRHKSRLAAQIKGLAA 88