BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1190.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774812.1| cytochrome c553 protein [Herbaspirillum sero... 294 8e-78 ref|ZP_04765146.1| cytochrome c553-like protein [Acidovorax dela... 230 1e-58 ref|YP_001354761.1| cytochrome C [Janthinobacterium sp. Marseill... 227 1e-57 ref|ZP_06684834.1| cytochrome c family protein [Achromobacter pi... 223 2e-56 ref|YP_001019951.1| putative cytochrome c [Methylibium petroleip... 223 3e-56 >ref|YP_003774812.1| cytochrome c553 protein [Herbaspirillum seropedicae SmR1] gb|ADJ62904.1| cytochrome c553 protein [Herbaspirillum seropedicae SmR1] Length = 252 Score = 294 bits (753), Expect = 8e-78, Method: Composition-based stats. Identities = 164/205 (80%), Positives = 175/205 (85%) Query: 45 GMAERMAACIACHGKEGRATADGYYPRIAGKPEGYLLNQLQSFRDGRRRYPMMNYLLGHL 104 GMAERMAAC ACHGK+GRATADGYYPRIAGKPE YLLNQLQSFRDG+RRYPMMNYLL +L Sbjct: 44 GMAERMAACTACHGKQGRATADGYYPRIAGKPEAYLLNQLQSFRDGQRRYPMMNYLLANL 103 Query: 105 SDDYLQQIALFFADQHPPYPPPVPADVSATVLERGRLLVRQGKPAQGIAACASCHGAGLT 164 SDDYLQQIA FFADQHPPYPPP + SATVLERGR LV +G P + + ACA+CH L Sbjct: 104 SDDYLQQIARFFADQHPPYPPPASNEASATVLERGRRLVTEGDPQRRLPACAACHAPSLG 163 Query: 165 GVQPGIPGLLGLPRDYINAQLGAWRNGERTAKVPDCMGEIARALSPEEINAASSWLSSQP 224 GVQPGIPGLLGLPRDYINAQLGAWRNG+RTAK PDCM +ARALSPEEINAASSWLS+Q Sbjct: 164 GVQPGIPGLLGLPRDYINAQLGAWRNGDRTAKTPDCMAAVARALSPEEINAASSWLSAQA 223 Query: 225 VPADYAPERVLPKPLPVACGSMPGS 249 VPADYAP LP PLP CGS P S Sbjct: 224 VPADYAPAPALPSPLPQQCGSQPQS 248 >ref|ZP_04765146.1| cytochrome c553-like protein [Acidovorax delafieldii 2AN] gb|EER58048.1| cytochrome c553-like protein [Acidovorax delafieldii 2AN] Length = 240 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 129/225 (57%), Positives = 157/225 (69%), Gaps = 8/225 (3%) Query: 14 MKKLAAAALGTLI---AGGAAMAQTPADKPRAIPGMAERMAACIACHGKEGRATADGYYP 70 + +L ALGT + AG A +A T RA MA R+ AC +CHGKEGRAT DGY+P Sbjct: 20 LGRLLPLALGTAMSVPAGAADIATT-----RAADDMAPRVLACTSCHGKEGRATPDGYFP 74 Query: 71 RIAGKPEGYLLNQLQSFRDGRRRYPMMNYLLGHLSDDYLQQIALFFADQHPPYPPPVPAD 130 RIAGKP GYL NQL +FRDGRR YP M YL+ HL+DDYL++IA FA PY P Sbjct: 75 RIAGKPAGYLYNQLLNFRDGRRSYPQMGYLIEHLTDDYLREIAGHFARLDVPYALPPQPQ 134 Query: 131 VSATVLERGRLLVRQGKPAQGIAACASCHGAGLTGVQPGIPGLLGLPRDYINAQLGAWRN 190 + VLE+GRLLV+QG A+ + AC CHG +TGVQP IPGLLGLPRDY+N+QLGAW+ Sbjct: 135 AARYVLEQGRLLVQQGDAARKLPACVQCHGQAMTGVQPAIPGLLGLPRDYLNSQLGAWKT 194 Query: 191 GERTAKVPDCMGEIARALSPEEINAASSWLSSQPVPADYAPERVL 235 G+R A+ PDCM IAR LSPEE++A S+WL++QPVP P L Sbjct: 195 GQRRAQAPDCMASIARQLSPEEVSAVSAWLAAQPVPGSGKPAEAL 239 >ref|YP_001354761.1| cytochrome C [Janthinobacterium sp. Marseille] gb|ABR90467.1| probable cytochrome C [Janthinobacterium sp. Marseille] Length = 243 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 113/201 (56%), Positives = 148/201 (73%) Query: 46 MAERMAACIACHGKEGRATADGYYPRIAGKPEGYLLNQLQSFRDGRRRYPMMNYLLGHLS 105 +A+R+AAC+ CHGKEGRA +DGYYPRIAGKP GYL NQL +FRDG+R YP+M +L ++S Sbjct: 41 IAQRVAACVVCHGKEGRAGSDGYYPRIAGKPAGYLYNQLINFRDGKRTYPVMTAMLENMS 100 Query: 106 DDYLQQIALFFADQHPPYPPPVPADVSATVLERGRLLVRQGKPAQGIAACASCHGAGLTG 165 D YL++IA +F++QHPPYP P A + LERGR LV G A+GI AC +CH A +TG Sbjct: 101 DAYLREIAQYFSEQHPPYPEPQAAQSNPAELERGRRLVHDGDKAKGIPACVACHSAKMTG 160 Query: 166 VQPGIPGLLGLPRDYINAQLGAWRNGERTAKVPDCMGEIARALSPEEINAASSWLSSQPV 225 P IPGL+GLPRDY+ Q+GAW+ G R A PDCM +I + +S E+I+AA++WLS Q V Sbjct: 161 TAPAIPGLIGLPRDYLLGQIGAWKIGTRHAAQPDCMADIVKKMSAEDISAAAAWLSEQRV 220 Query: 226 PADYAPERVLPKPLPVACGSM 246 PAD +P + LP+ CG + Sbjct: 221 PADASPAPAITAKLPLECGKL 241 >ref|ZP_06684834.1| cytochrome c family protein [Achromobacter piechaudii ATCC 43553] gb|EFF78185.1| cytochrome c family protein [Achromobacter piechaudii ATCC 43553] Length = 252 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 118/200 (59%), Positives = 149/200 (74%) Query: 46 MAERMAACIACHGKEGRATADGYYPRIAGKPEGYLLNQLQSFRDGRRRYPMMNYLLGHLS 105 MA R+AAC ACHG +GRA DGYYPR+AGKP+ YL +QL +FRD RR+Y M++LL L Sbjct: 49 MAARVAACTACHGAQGRAGTDGYYPRLAGKPQEYLYHQLLNFRDDRRQYRPMSHLLAGLP 108 Query: 106 DDYLQQIALFFADQHPPYPPPVPADVSATVLERGRLLVRQGKPAQGIAACASCHGAGLTG 165 DDYL+++A +F++QH PYPPP+ ADVS+ LE GR+L QG A+G+ ACASCHGA L G Sbjct: 109 DDYLREMARYFSEQHVPYPPPMRADVSSATLEAGRVLALQGDAARGLPACASCHGAALGG 168 Query: 166 VQPGIPGLLGLPRDYINAQLGAWRNGERTAKVPDCMGEIARALSPEEINAASSWLSSQPV 225 + P IPGLLGLPRDYI +Q+G+W+ G R A PDCM +IA+ L+P +I A ++WLSSQPV Sbjct: 169 LMPAIPGLLGLPRDYIGSQIGSWKTGLRRAAAPDCMADIAQKLTPSDIGALAAWLSSQPV 228 Query: 226 PADYAPERVLPKPLPVACGS 245 YAPE LP CGS Sbjct: 229 VEPYAPEAAGSLELPAQCGS 248 >ref|YP_001019951.1| putative cytochrome c [Methylibium petroleiphilum PM1] gb|ABM93716.1| putative cytochrome c [Methylibium petroleiphilum PM1] Length = 240 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 122/212 (57%), Positives = 151/212 (71%) Query: 35 TPADKPRAIPGMAERMAACIACHGKEGRATADGYYPRIAGKPEGYLLNQLQSFRDGRRRY 94 TPA +A+R+ AC CHGKEG+AT GY+PRIAGKP GYL +QL +FRDGRR Y Sbjct: 27 TPAPHWPPEDTLAQRVLACTTCHGKEGQATNFGYFPRIAGKPAGYLHHQLLAFRDGRRHY 86 Query: 95 PMMNYLLGHLSDDYLQQIALFFADQHPPYPPPVPADVSATVLERGRLLVRQGKPAQGIAA 154 P+M+ L+ LSDDYL+++A +FA PYPPP D A +LERGR+LVR+G A+ + A Sbjct: 87 PLMSALVETLSDDYLREMAEYFAALDLPYPPPQTRDAPAALLERGRVLVREGDAARQLPA 146 Query: 155 CASCHGAGLTGVQPGIPGLLGLPRDYINAQLGAWRNGERTAKVPDCMGEIARALSPEEIN 214 C CHG + GVQP IPGLLGLPRDY+N+QLG WR+G+R A PDCM +IAR L+PE+I Sbjct: 147 CTQCHGEAMLGVQPAIPGLLGLPRDYLNSQLGQWRSGQRHALAPDCMADIARQLAPEDIA 206 Query: 215 AASSWLSSQPVPADYAPERVLPKPLPVACGSM 246 A S+WLSSQPVPA P LP LP C + Sbjct: 207 ALSAWLSSQPVPAGGKPAAALPAKLPRPCSGV 238