BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1189.p (433 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774811.1| cytochrome c protein [Herbaspirillum seroped... 616 e-174 ref|YP_004754064.1| putative diheme cytochrome c-553 [Collimonas... 474 e-131 ref|YP_001354762.1| cytochrome c [Janthinobacterium sp. Marseill... 457 e-126 ref|YP_560336.1| putative periplasmic cytochrome c [Burkholderia... 439 e-121 gb|EGP46894.1| gluconate 2-dehydrogenase cytochrome subunit C [A... 432 e-119 >ref|YP_003774811.1| cytochrome c protein [Herbaspirillum seropedicae SmR1] gb|ADJ62903.1| cytochrome c protein [Herbaspirillum seropedicae SmR1] Length = 431 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 316/408 (77%), Positives = 349/408 (85%) Query: 26 VIAWQSLRSEDPGVVVPVTDRQAQLAKGQYLARAGNCMACHTVRGGAAYAGGRALPTPFG 85 VI WQ L E+ G P D QLA+GQYLARAGNCMACHT RGGA YAGGRA+ +PFG Sbjct: 24 VIGWQWLGPEERGAATPAPDPTRQLAQGQYLARAGNCMACHTARGGAPYAGGRAIASPFG 83 Query: 86 TIYTTNITPDRANGIGDWSADDFWRALHHGRGRDGRFLFPAFPYTSYTQLSREDSDALFA 145 T+YT+NITPD+ GIG WSADDFWRALHHGRG++G+FL+PAFPYTSYT+LSR DSDALFA Sbjct: 84 TLYTSNITPDKTTGIGQWSADDFWRALHHGRGKEGQFLYPAFPYTSYTRLSRADSDALFA 143 Query: 146 WLRTLPPVNQPNRSHDLRFPYDQRPLLGLWRAFFFTPAVYQPDPARSAQWNRGAYLVRGA 205 +L++LPPV + N++H LRFPYDQR LLGLWRA +FTP YQPDP + AQWNRGAYLV+GA Sbjct: 144 YLQSLPPVARANQAHTLRFPYDQRMLLGLWRALYFTPQSYQPDPRQDAQWNRGAYLVQGA 203 Query: 206 GHCSACHSARNVVAASIAPLDLAGGMIPALDWYAPPLHGGEHGLGGWSEADIAALLRTGV 265 GHCSACHSARN + ASI PL LAGG+IPAL WYAPPLHGG GL WS ADIAALL+TGV Sbjct: 204 GHCSACHSARNRLGASIEPLALAGGVIPALQWYAPPLHGGADGLQDWSTADIAALLKTGV 263 Query: 266 SPRGTSLGPMSEIVGRSLQYLNDEDINAMAVYLKSLPAQPLPAASAAAQPEPAEAERILK 325 SP +LGPMSEIVGRSLQYLND D++AMAVYLKSLPA A+ A EPAEAERI+K Sbjct: 264 SPHAVTLGPMSEIVGRSLQYLNDADVSAMAVYLKSLPASAADDAARPASVEPAEAERIMK 323 Query: 326 QGKKLYGELCVDCHGGKGQGSAPDYPPLAGNHAIGGPQAVNAIRAVLNGGFPPSTAGNPY 385 QGK+LYG LCVDCHGGKGQGSAPDYPPLAGN AI GP NA+RAVLNGGFPPSTAGNPY Sbjct: 324 QGKQLYGTLCVDCHGGKGQGSAPDYPPLAGNRAIAGPHPANAVRAVLNGGFPPSTAGNPY 383 Query: 386 PFGMPPFGPQLSDQEVAALVSYVRNSWGNQGGFVSASEVNRYRSVPLD 433 PFGMPPFGPQLSDQEVAA+VSYVRNSWGNQGG VSA+EVNRYRSVPLD Sbjct: 384 PFGMPPFGPQLSDQEVAAVVSYVRNSWGNQGGLVSAAEVNRYRSVPLD 431 >ref|YP_004754064.1| putative diheme cytochrome c-553 [Collimonas fungivorans Ter331] gb|AEK63241.1| Putative diheme cytochrome c-553 [Collimonas fungivorans Ter331] Length = 431 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 228/386 (59%), Positives = 285/386 (73%), Gaps = 2/386 (0%) Query: 49 QLAKGQYLARAGNCMACHTVRGGAAYAGGRALPTPFGTIYTTNITPDRANGIGDWSADDF 108 Q+++G YL + G+CMACHT RGG AGGRA+ TPFG IY N+TPDR GIG WSADDF Sbjct: 47 QISRGAYLVQGGDCMACHTARGGKELAGGRAIQTPFGAIYAPNLTPDRETGIGSWSADDF 106 Query: 109 WRALHHGRGRDGRFLFPAFPYTSYTQLSREDSDALFAWLRTLPPVNQPNRSHDLRFPYDQ 168 W+ALH+G+ +DG L+PAFPYT+YT+++R D+DA+FA+LR++P V Q NR DLRFPY+ Sbjct: 107 WQALHNGKSKDGSLLYPAFPYTNYTKVTRSDADAMFAYLRSVPAVQQKNRQSDLRFPYNN 166 Query: 169 RPLLGLWRAFFFTPAVYQPDPARSAQWNRGAYLVRGAGHCSACHSARNVVAASIAPLDLA 228 R LL WRA +F P YQ + +S +WNRGAYLV+G GHCSACH+ RN + + DL Sbjct: 167 RFLLYGWRALYFRPGTYQDETRQSVEWNRGAYLVQGLGHCSACHTTRNALGGTDLKADLG 226 Query: 229 GGMIPALDWYAPPLHGGEH-GLGGWSEADIAALLRTGVSPRGTSLGPMSEIVGRSLQYLN 287 GG IP ++WYAP L + GLG W I LL+ GVSPRGT LGPM+E+VG SLQ+L+ Sbjct: 227 GGFIPVVNWYAPSLTSDQEIGLGNWDIEHITGLLKNGVSPRGTVLGPMAEVVGASLQHLS 286 Query: 288 DEDINAMAVYLKSLPAQPLPAASAAAQPEPAEAERILKQGKKLYGELCVDCHGGKGQGSA 347 D+D+ AMAVYLKSLP Q A+ + P E R+++ G+K+Y C+DCH G+G Sbjct: 287 DQDVRAMAVYLKSLPRQK-EASEPKERASPDEVARVMELGQKIYKNHCIDCHQASGKGQW 345 Query: 348 PDYPPLAGNHAIGGPQAVNAIRAVLNGGFPPSTAGNPYPFGMPPFGPQLSDQEVAALVSY 407 P YPPLA NHAI P VNAIR VLNGGF PSTA NP P+GMPP+GP LSD EVAA+VSY Sbjct: 346 PAYPPLASNHAITMPAPVNAIRVVLNGGFAPSTAANPRPYGMPPYGPALSDSEVAAVVSY 405 Query: 408 VRNSWGNQGGFVSASEVNRYRSVPLD 433 +RNSWGN+ VSA+EVNRYR+VPL+ Sbjct: 406 IRNSWGNKAPIVSAAEVNRYRAVPLE 431 >ref|YP_001354762.1| cytochrome c [Janthinobacterium sp. Marseille] gb|ABR90805.1| cytochrome c [Janthinobacterium sp. Marseille] Length = 428 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 227/416 (54%), Positives = 299/416 (71%), Gaps = 3/416 (0%) Query: 16 VLAVVALAGGVIAWQSLRSEDPGVVVPVTDRQAQLAKGQYLARAGNCMACHTVRGGAAYA 75 +L ++ + G + W + + VP TD QL +G+YLAR GNCM+CHT RGG +YA Sbjct: 13 LLGIITVFVGWLYWANRNPDLGQASVPPTDPAQQLVQGEYLARVGNCMSCHTSRGGESYA 72 Query: 76 GGRALPTPFGTIYTTNITPDRANGIGDWSADDFWRALHHGRGRDGRFLFPAFPYTSYTQL 135 GGRA+PTPFG IYT+N+TPD G+G W+++DFW+A+H G+ +DG L+PAFPYT+YT++ Sbjct: 73 GGRAVPTPFGNIYTSNLTPDAETGLGKWNSNDFWQAMHDGKSKDGSLLYPAFPYTNYTKV 132 Query: 136 SREDSDALFAWLRTLPPVNQPNRSHDLRFPYDQRPLLGLWRAFFFTPAVYQPDPARSAQW 195 +R DSDA+FA+L+TLP V+Q NR+ DLRFPYD R L +WRA +F P Y D +S +W Sbjct: 133 TRADSDAIFAYLQTLPAVSQQNRAPDLRFPYDNRVALYVWRALYFRPGQYANDDKQSVEW 192 Query: 196 NRGAYLVRGAGHCSACHSARNVVAASIAPLDLAGGMIPALDWYAPPLHG-GEHGLGGWSE 254 NRGAYL +G GHCSACHS R+ + + +L GGMIP L+WYAPPL+G + LG W Sbjct: 193 NRGAYLAQGLGHCSACHSPRDALGGTDLKAELGGGMIPVLNWYAPPLNGDAQTSLGNWET 252 Query: 255 ADIAALLRTGVSPRGTSLGPMSEIVGRSLQYLNDEDINAMAVYLKSLPAQPLPAASAAAQ 314 +AAL++TG +P + GPM+E+V SLQY DEDI AMA+YLKSLP Q +PA AAA+ Sbjct: 253 EHLAALMKTGTAPSRSVSGPMAEVVFGSLQYAKDEDIKAMALYLKSLPQQ-IPAPVAAAE 311 Query: 315 PEPAEAER-ILKQGKKLYGELCVDCHGGKGQGSAPDYPPLAGNHAIGGPQAVNAIRAVLN 373 P E ++ ++K G KLY C CH G+G A YP LAG+ AI P A NAIR VL+ Sbjct: 312 SVPDETKKNMIKAGAKLYENQCASCHQESGKGVAAIYPALAGSRAITTPVATNAIRMVLH 371 Query: 374 GGFPPSTAGNPYPFGMPPFGPQLSDQEVAALVSYVRNSWGNQGGFVSASEVNRYRS 429 GG+ PSTAGNP P+GMPPFG ++D+EVA++V+Y+RNSWGNQ VS ++VNRYRS Sbjct: 372 GGYAPSTAGNPRPYGMPPFGHSMTDEEVASVVTYIRNSWGNQATAVSPNDVNRYRS 427 >ref|YP_560336.1| putative periplasmic cytochrome c [Burkholderia xenovorans LB400] gb|ABE32284.1| Putative periplasmic cytochrome c [Burkholderia xenovorans LB400] Length = 432 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 214/404 (52%), Positives = 279/404 (69%), Gaps = 15/404 (3%) Query: 38 GVVVPVTDRQAQLAKGQYLARAGNCMACHTVRGGAAYAGGRALPTPFGTIYTTNITPDRA 97 V D+ A + KG+YLARAG+C+ACHTVRGG +AGG + TPFGT++T NITPD Sbjct: 36 AVAATPADQAALIKKGEYLARAGDCIACHTVRGGKQFAGGLPMATPFGTMFTPNITPDDQ 95 Query: 98 NGIGDWSADDFWRALHHGRGRDGRFLFPAFPYTSYTQLSREDSDALFAWLRTLPPVNQPN 157 GIG W+ DDF+RA+H GR +DG L+P FP+TSYT+++R DSDA++A+LR++ PVN P+ Sbjct: 96 YGIGKWTQDDFYRAMHTGRSKDGSLLYPGFPFTSYTKVTRADSDAIYAYLRSVTPVNVPS 155 Query: 158 RSHDLRFPYDQRPLLGLWRAFFFTPAVYQPDPARSAQWNRGAYLVRGAGHCSACHSARNV 217 R H+L+FP++QR +L WR FF Y+PDP +S +WNRGAYL+ G GHC CH++ N Sbjct: 156 RPHELKFPFNQRNMLIGWRTLFFREGEYKPDPTKSVEWNRGAYLIEGLGHCGMCHTSINA 215 Query: 218 VAASIAPLDLAGGMIPALDWYAPPLHGG-EHGLGGWSEADIAALLRTGVSPRGTSLGPMS 276 + ++ AGG+IP +WYAP L E GLG W DIA LL+TGVS RG GPM+ Sbjct: 216 MGGPVSSAAFAGGLIPLQNWYAPSLTSNKEAGLGDWETKDIADLLKTGVSNRGAVFGPMA 275 Query: 277 EIVGRSLQYLNDEDINAMAVYLKSLPAQPLPAASAAAQPEPAEAE-------RILKQGKK 329 E+V SLQY++DEDINAMA YLK++P + + PEP + E +LKQG+K Sbjct: 276 EVVHNSLQYMSDEDINAMATYLKTIPQK-------SEAPEPLQLETSEKFGGELLKQGQK 328 Query: 330 LYGELCVDCHGGKGQGSAPDYPPLAGNHAIGGPQAVNAIRAVLNGGFPPSTAGNPYPFGM 389 +Y + C CH G G P +PPLA N +I P AVN IR VLNGG+PPST NP+P+GM Sbjct: 329 IYADNCAKCHAENGLGMPPAFPPLANNQSIQMPSAVNPIRMVLNGGYPPSTDANPHPYGM 388 Query: 390 PPFGPQLSDQEVAALVSYVRNSWGNQGGFVSASEVNRYRSVPLD 433 PPF LS+QEVAA+V+Y+R SWGN G VS +V+ RS PLD Sbjct: 389 PPFAQALSNQEVAAVVTYIRMSWGNHGTAVSPQQVSDLRSAPLD 432 >gb|EGP46894.1| gluconate 2-dehydrogenase cytochrome subunit C [Achromobacter xylosoxidans AXX-A] Length = 427 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 235/420 (55%), Positives = 294/420 (70%), Gaps = 6/420 (1%) Query: 12 LLGSVLAVVALAGGVIAWQSLRSE-DPGVVVPVTDRQAQLAKGQYLARAGNCMACHTVRG 70 +LG++LA+ +A G + W R + G D Q ++ +G+YLA AGNCMACHT RG Sbjct: 7 ILGTLLALAVIAVGALYWLGTRDDASTGAAAAPADPQQRIERGRYLALAGNCMACHTARG 66 Query: 71 GAAYAGGRALPTPFGTIYTTNITPDRANGIGDWSADDFWRALHHGRGRDGRFLFPAFPYT 130 G AYAGG +PTPFGTIY NITPD GIG WSADDFW+ALH+G+ RDG L+PAFPYT Sbjct: 67 GQAYAGGTPIPTPFGTIYGPNITPDEKTGIGAWSADDFWQALHNGKSRDGTLLYPAFPYT 126 Query: 131 SYTQLSREDSDALFAWLRTLPPVNQPNRSHDLRFPYDQRPLLGLWRAFFFTPAVYQPDPA 190 YT+++R D+DALFA+LRT+ PVNQP+R+ +L FPYDQR LL WRA +F P V + DP Sbjct: 127 EYTRVTRADADALFAYLRTITPVNQPSRAPELDFPYDQRLLLAAWRALYFRPGVQEADPG 186 Query: 191 RSAQWNRGAYLVRGAGHCSACHSARNVVAASIAPLDLAGGMIPALDWYAPPL-HGGEHGL 249 +S QWNRG YLV G GHC+ACH+ RN + A+ A LAGG+IP LDWYAPPL + + GL Sbjct: 187 QSTQWNRGRYLVEGLGHCAACHAPRNSLGATRAADGLAGGIIPMLDWYAPPLTNDPQTGL 246 Query: 250 GGWSEADIAALLRTGVSPRGTSLGPMSEIVGRSLQYLNDEDINAMAVYLKSLPAQPLPAA 309 G WS DIAALLRTG++ ++ GPM+E+V S Q+L + D AM VYLKSLPA P ++ Sbjct: 247 GRWSAEDIAALLRTGMAAHSSASGPMAEVVLGSTQHLTEADALAMGVYLKSLPATPAASS 306 Query: 310 SAAAQPEPAEAERILKQGKKLYGELCVDCHGGKGQGSAPDYPPLAGNHAIGGPQAVNAIR 369 AA PA E G K+Y + C CH +G+GSA +P LAGN + P VNAIR Sbjct: 307 RPAAPASPAAME----LGGKIYRQQCAQCHQPQGEGSAGAWPALAGNPTVTAPSPVNAIR 362 Query: 370 AVLNGGFPPSTAGNPYPFGMPPFGPQLSDQEVAALVSYVRNSWGNQGGFVSASEVNRYRS 429 VL+GGF P+TA NP P GMPPFG L+D +VA LVSY+RNSWGN+ G V+ EV R R+ Sbjct: 363 MVLDGGFAPATAANPRPHGMPPFGQLLNDNDVAMLVSYIRNSWGNEAGGVTPLEVKRARA 422