BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1184.p (215 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774806.1| 23S rRNA methyltransferase [Herbaspirillum s... 409 e-112 ref|YP_004753148.1| ribosomal RNA large subunit methyltransferas... 347 6e-94 ref|YP_001353928.1| 23S rRNA methylase [Janthinobacterium sp. Ma... 337 5e-91 ref|YP_001099474.1| ribosomal RNA large subunit methyltransferas... 336 1e-90 ref|YP_773065.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burk... 332 2e-89 >ref|YP_003774806.1| 23S rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ62898.1| 23S rRNA methyltransferase (Cell division protein FtsJ) protein [Herbaspirillum seropedicae SmR1] Length = 215 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 211/215 (98%), Positives = 214/215 (99%) Query: 1 MAKNKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPG 60 MAKNKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPG Sbjct: 1 MAKNKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPG 60 Query: 61 SWCQYARNKLAGAEGGGIHGTIIGLDMLPMDPIADVHYIQGDFREDEPVRQLEALLDGRK 120 SWCQY RNKLAGAEGGGIHGTIIGLD+LPMDPIADVHYIQGDFREDEPVRQLEA+LDGRK Sbjct: 61 SWCQYVRNKLAGAEGGGIHGTIIGLDILPMDPIADVHYIQGDFREDEPVRQLEAVLDGRK 120 Query: 121 ADLVLSDMAPNLSGVAIADAARVEYLIDLAIEFAQLHMKPGGSLLVKCFNGTGYNELVHK 180 ADLVLSDMAPNLSGVAIADAARVEYLIDLAI+FAQLHMKPGGSLLVKCFNGTGYNELVHK Sbjct: 121 ADLVLSDMAPNLSGVAIADAARVEYLIDLAIDFAQLHMKPGGSLLVKCFNGTGYNELVHK 180 Query: 181 FRAEFKTVMSKKPKASRDKSSEIFLLGKILKNPRS 215 FRAEFKTVMSKKPKASRDKSSEIFLLGKILKNPRS Sbjct: 181 FRAEFKTVMSKKPKASRDKSSEIFLLGKILKNPRS 215 >ref|YP_004753148.1| ribosomal RNA large subunit methyltransferase J [Collimonas fungivorans Ter331] gb|AEK62325.1| Ribosomal RNA large subunit methyltransferase J [Collimonas fungivorans Ter331] Length = 214 Score = 347 bits (891), Expect = 6e-94, Method: Composition-based stats. Identities = 179/214 (83%), Positives = 198/214 (92%) Query: 1 MAKNKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPG 60 MAK KLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDE ++LIKPGQ+IVDLG TPG Sbjct: 1 MAKKKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDELDKLIKPGQIIVDLGSTPG 60 Query: 61 SWCQYARNKLAGAEGGGIHGTIIGLDMLPMDPIADVHYIQGDFREDEPVRQLEALLDGRK 120 SW QYARNKL+G +GGGIHG IIGLD+LPM+PIADVH+IQGDFRE + +RQLE LL+GRK Sbjct: 61 SWSQYARNKLSGQDGGGIHGMIIGLDILPMEPIADVHFIQGDFREADSLRQLERLLEGRK 120 Query: 121 ADLVLSDMAPNLSGVAIADAARVEYLIDLAIEFAQLHMKPGGSLLVKCFNGTGYNELVHK 180 DLVLSDMAPNLSG+AI+DAARVE +IDLAIEF+Q HMKPGG+LL KCFNGTGYNE++ K Sbjct: 121 VDLVLSDMAPNLSGIAISDAARVEEIIDLAIEFSQQHMKPGGALLAKCFNGTGYNEVLMK 180 Query: 181 FRAEFKTVMSKKPKASRDKSSEIFLLGKILKNPR 214 FR EFKTV S+KPKASRDKSSEIFLLGKILKNPR Sbjct: 181 FRQEFKTVASRKPKASRDKSSEIFLLGKILKNPR 214 >ref|YP_001353928.1| 23S rRNA methylase [Janthinobacterium sp. Marseille] sp|A6T081|RLME_JANMA RecName: Full=Ribosomal RNA large subunit methyltransferase E; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2'-O-)-methyltransferase gb|ABR88403.1| 23S rRNA methylase [Janthinobacterium sp. Marseille] Length = 214 Score = 337 bits (865), Expect = 5e-91, Method: Composition-based stats. Identities = 173/213 (81%), Positives = 191/213 (89%) Query: 1 MAKNKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPG 60 MAKNKLNKNWLHDHINDPYVKLAQKEGYRARA YKLKEIDE E+LIKPGQ+IVDLG TPG Sbjct: 1 MAKNKLNKNWLHDHINDPYVKLAQKEGYRARAVYKLKEIDETEKLIKPGQIIVDLGATPG 60 Query: 61 SWCQYARNKLAGAEGGGIHGTIIGLDMLPMDPIADVHYIQGDFREDEPVRQLEALLDGRK 120 SW QY RNKL+G+ GGGI+GTIIGLDMLPM+PIADVH+IQGDFRE E + QLE +L GRK Sbjct: 61 SWSQYVRNKLSGSVGGGINGTIIGLDMLPMEPIADVHFIQGDFREQEVLEQLEQVLQGRK 120 Query: 121 ADLVLSDMAPNLSGVAIADAARVEYLIDLAIEFAQLHMKPGGSLLVKCFNGTGYNELVHK 180 DLV+SDMAPNLSG+A+ADAAR+ LIDLAI+F Q HMKP GSLLVKCFNG+GY+ +V K Sbjct: 121 VDLVISDMAPNLSGIAVADAARMIDLIDLAIDFTQHHMKPSGSLLVKCFNGSGYSYIVEK 180 Query: 181 FRAEFKTVMSKKPKASRDKSSEIFLLGKILKNP 213 FR EFKTV+ KKPKASRDKSSEIFLLGK LKNP Sbjct: 181 FRDEFKTVVQKKPKASRDKSSEIFLLGKTLKNP 213 >ref|YP_001099474.1| ribosomal RNA large subunit methyltransferase J [Herminiimonas arsenicoxydans] sp|A4G4B0|RLME_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase E; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2'-O-)-methyltransferase emb|CAL61347.1| Ribosomal RNA large subunit methyltransferase J (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA methyltransferase) [Herminiimonas arsenicoxydans] Length = 214 Score = 336 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 171/213 (80%), Positives = 189/213 (88%) Query: 1 MAKNKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPG 60 MAK KLNKNWLHDHINDPYVKLAQKEGYRARA YKLKEIDE E+LIKPGQ+IVDLGCTPG Sbjct: 1 MAKKKLNKNWLHDHINDPYVKLAQKEGYRARAVYKLKEIDESEKLIKPGQIIVDLGCTPG 60 Query: 61 SWCQYARNKLAGAEGGGIHGTIIGLDMLPMDPIADVHYIQGDFREDEPVRQLEALLDGRK 120 SW QY RNKL+G+ GGGI+G IIGLDML M+PIADVHYIQGDFRE + QLE +L GRK Sbjct: 61 SWSQYVRNKLSGSVGGGINGIIIGLDMLEMEPIADVHYIQGDFREQNVLEQLEVVLAGRK 120 Query: 121 ADLVLSDMAPNLSGVAIADAARVEYLIDLAIEFAQLHMKPGGSLLVKCFNGTGYNELVHK 180 DLVLSDMAPNLSG+A+ADAAR+ +I+LAI+FAQ HMKP GSLLVKCFNG+G+N++V K Sbjct: 121 VDLVLSDMAPNLSGIAVADAARMMDIIELAIDFAQHHMKPSGSLLVKCFNGSGFNDIVEK 180 Query: 181 FRAEFKTVMSKKPKASRDKSSEIFLLGKILKNP 213 FR EFKTV KKPKASRDKSSEIFLLGK LKNP Sbjct: 181 FRHEFKTVTQKKPKASRDKSSEIFLLGKTLKNP 213 >ref|YP_773065.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria AMMD] sp|Q0BGJ2|RLME_BURCM RecName: Full=Ribosomal RNA large subunit methyltransferase E; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2'-O-)-methyltransferase gb|ABI86731.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia ambifaria AMMD] Length = 220 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 158/220 (71%), Positives = 190/220 (86%), Gaps = 6/220 (2%) Query: 1 MAKNKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPG 60 MAKN+ N+NWLHDHINDPYVK+AQ+EGYRARAAYKLKEIDE+++LI+PGQVIVDLG TPG Sbjct: 1 MAKNRFNQNWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPG 60 Query: 61 SWCQYARNKLAGAEG------GGIHGTIIGLDMLPMDPIADVHYIQGDFREDEPVRQLEA 114 SW QYARNKLA + GGI GTII LD+LPM+PIADVH+IQGDFRED+ +RQLE Sbjct: 61 SWSQYARNKLAQGKKRDTQREGGIDGTIIALDLLPMEPIADVHFIQGDFREDDVLRQLED 120 Query: 115 LLDGRKADLVLSDMAPNLSGVAIADAARVEYLIDLAIEFAQLHMKPGGSLLVKCFNGTGY 174 +L+GR DLV+SDMAPNLSGVA ADAAR+E+L DLA+EFAQ H+KP G+LLVKCF+G+GY Sbjct: 121 VLEGRAVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGY 180 Query: 175 NELVHKFRAEFKTVMSKKPKASRDKSSEIFLLGKILKNPR 214 +++V KF+ +FK V +KPKASRDKSSE F+LG+ LK PR Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRQLKQPR 220