BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1183.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774805.1| RNA-binding ribosomal protein [Herbaspirillu...   161   2e-38
ref|YP_004753149.1| RNA binding protein [Collimonas fungivorans ...   147   7e-34
ref|ZP_08275235.1| hypothetical protein IMCC9480_87 [Oxalobacter...   144   4e-33
ref|YP_001099473.1| hypothetical protein HEAR1168 [Herminiimonas...   142   2e-32
ref|YP_001353929.1| hypothetical protein mma_2239 [Janthinobacte...   139   2e-31

>ref|YP_003774805.1| RNA-binding ribosomal protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62897.1| RNA-binding ribosomal (KH domain containing) protein
          [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 86/91 (94%), Positives = 90/91 (98%)

Query: 1  MLNLTPAERSELRAQAHGLNPVVMVGESGLTESVMKEIDKSLNAHGLIKVRVFGDDREAR 60
          ML LTPAERSELRAQAHGLNPVVMVGESGL+ESVMKEIDKSLNAHGLIKVRVFGDDREAR
Sbjct: 1  MLTLTPAERSELRAQAHGLNPVVMVGESGLSESVMKEIDKSLNAHGLIKVRVFGDDREAR 60

Query: 61 IAIYETICAELKAAPVQHIGKLLVIFRPKKD 91
          IAIYETICAELKAAPVQHIGKLLV++RP+KD
Sbjct: 61 IAIYETICAELKAAPVQHIGKLLVLYRPQKD 91


>ref|YP_004753149.1| RNA binding protein [Collimonas fungivorans Ter331]
 gb|AEK62326.1| RNA binding protein [Collimonas fungivorans Ter331]
          Length = 156

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 78/97 (80%), Positives = 87/97 (89%)

Query: 1  MLNLTPAERSELRAQAHGLNPVVMVGESGLTESVMKEIDKSLNAHGLIKVRVFGDDREAR 60
          ML LT AERSELR+QAHGLNPVV++ E GL  S+MKEID SLN+HGLIKVRVFGDDREAR
Sbjct: 1  MLKLTSAERSELRSQAHGLNPVVLISEDGLKPSLMKEIDASLNSHGLIKVRVFGDDREAR 60

Query: 61 IAIYETICAELKAAPVQHIGKLLVIFRPKKDAVKERS 97
          IAIYETIC +L AAPVQHIGKLLV++RP+KDA KERS
Sbjct: 61 IAIYETICEKLGAAPVQHIGKLLVLYRPQKDAAKERS 97


>ref|ZP_08275235.1| hypothetical protein IMCC9480_87 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31293.1| hypothetical protein IMCC9480_87 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 158

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/118 (66%), Positives = 94/118 (79%), Gaps = 1/118 (0%)

Query: 1   MLNLTPAERSELRAQAHGLNPVVMVGESGLTESVMKEIDKSLNAHGLIKVRVFGDDREAR 60
           ML LTP+ERS LRA+AH LNP+V++GE+GLTE V+KEID  L+AHGLIKVRVFGDDREAR
Sbjct: 1   MLKLTPSERSALRAEAHALNPIVIIGEAGLTEPVLKEIDNGLDAHGLIKVRVFGDDREAR 60

Query: 61  IAIYETICAELKAAPVQHIGKLLVIFRPKKDAVKE-RSANLAARACAKSPSSSPAPAA 117
           I +YETIC +L AAPVQHIGKLLV++R KKDAVKE RS +   R   +     P+P+ 
Sbjct: 61  IGMYETICDKLGAAPVQHIGKLLVVYRAKKDAVKELRSDSKKGRGMREVTIVKPSPSG 118


>ref|YP_001099473.1| hypothetical protein HEAR1168 [Herminiimonas arsenicoxydans]
 emb|CAL61346.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 156

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/97 (75%), Positives = 87/97 (89%)

Query: 1  MLNLTPAERSELRAQAHGLNPVVMVGESGLTESVMKEIDKSLNAHGLIKVRVFGDDREAR 60
          ML LTPAERS LRA+AH L+PVV++GE+GLT  V+KEID SL++HGLIKVRVFGDDREAR
Sbjct: 1  MLKLTPAERSSLRAEAHALSPVVIIGEAGLTPGVLKEIDASLDSHGLIKVRVFGDDREAR 60

Query: 61 IAIYETICAELKAAPVQHIGKLLVIFRPKKDAVKERS 97
          +AIY+TIC +L  AP+QHIGKLLVI+RPKK+ VKERS
Sbjct: 61 VAIYDTICEKLDTAPIQHIGKLLVIYRPKKEVVKERS 97


>ref|YP_001353929.1| hypothetical protein mma_2239 [Janthinobacterium sp. Marseille]
 gb|ABR88985.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 156

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/97 (74%), Positives = 86/97 (88%)

Query: 1  MLNLTPAERSELRAQAHGLNPVVMVGESGLTESVMKEIDKSLNAHGLIKVRVFGDDREAR 60
          ML LTPAERS LRA+AH L+PVV++GE+GLT  V+KEID SLN+HGLIKVRVFGDDREAR
Sbjct: 1  MLKLTPAERSSLRAEAHALSPVVIIGEAGLTPGVLKEIDGSLNSHGLIKVRVFGDDREAR 60

Query: 61 IAIYETICAELKAAPVQHIGKLLVIFRPKKDAVKERS 97
          + IY+TIC +L AAP+QHIGKLLV++RPKK+AVK  S
Sbjct: 61 VTIYDTICEKLDAAPIQHIGKLLVVYRPKKEAVKAPS 97