BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1181.p         (51 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08275235.1| hypothetical protein IMCC9480_87 [Oxalobacter...    70   8e-11
ref|YP_001099473.1| hypothetical protein HEAR1168 [Herminiimonas...    69   2e-10
ref|YP_004753149.1| RNA binding protein [Collimonas fungivorans ...    69   3e-10
ref|YP_001353929.1| hypothetical protein mma_2239 [Janthinobacte...    67   7e-10
ref|YP_003774805.1| RNA-binding ribosomal protein [Herbaspirillu...    60   1e-07

>ref|ZP_08275235.1| hypothetical protein IMCC9480_87 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31293.1| hypothetical protein IMCC9480_87 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 158

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/49 (91%), Positives = 46/49 (93%)

Query: 1   MREVTIVKPSASGTKRPSVTKVMIKGNERVTAGGSIKRAKPRQKSAKKS 49
           MREVTIVKPS SGTKRPSVTKVM+KGNERVT GGSIKRAKPRQ SAKKS
Sbjct: 106 MREVTIVKPSPSGTKRPSVTKVMVKGNERVTQGGSIKRAKPRQTSAKKS 154


>ref|YP_001099473.1| hypothetical protein HEAR1168 [Herminiimonas arsenicoxydans]
 emb|CAL61346.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 156

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/49 (91%), Positives = 46/49 (93%)

Query: 1   MREVTIVKPSASGTKRPSVTKVMIKGNERVTAGGSIKRAKPRQKSAKKS 49
           MREVTIVKPSASGTKRPSVTKVM+KGNERVT GGSIKRAKPRQ S KKS
Sbjct: 104 MREVTIVKPSASGTKRPSVTKVMVKGNERVTQGGSIKRAKPRQTSPKKS 152


>ref|YP_004753149.1| RNA binding protein [Collimonas fungivorans Ter331]
 gb|AEK62326.1| RNA binding protein [Collimonas fungivorans Ter331]
          Length = 156

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/49 (89%), Positives = 47/49 (95%)

Query: 1   MREVTIVKPSASGTKRPSVTKVMIKGNERVTAGGSIKRAKPRQKSAKKS 49
           MREVTIVKPS SGTKRPSVTKVM+KGNERVT GG+IKRAKPRQKS+KKS
Sbjct: 104 MREVTIVKPSPSGTKRPSVTKVMVKGNERVTQGGNIKRAKPRQKSSKKS 152


>ref|YP_001353929.1| hypothetical protein mma_2239 [Janthinobacterium sp. Marseille]
 gb|ABR88985.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 156

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/49 (89%), Positives = 45/49 (91%)

Query: 1   MREVTIVKPSASGTKRPSVTKVMIKGNERVTAGGSIKRAKPRQKSAKKS 49
           MREVTIVKPS SGTKRPSVTKVM+KGNERVT GGSIKRAKPRQ S KKS
Sbjct: 104 MREVTIVKPSPSGTKRPSVTKVMVKGNERVTQGGSIKRAKPRQTSPKKS 152


>ref|YP_003774805.1| RNA-binding ribosomal protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62897.1| RNA-binding ribosomal (KH domain containing) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 45/51 (88%), Gaps = 2/51 (3%)

Query: 1   MREVTIVKPSASGTKRPSVTKVMIKGNERVTAGGSIKRAKPRQKSAKKSMG 51
           +REVTIVK  A  TKRPSV+KVM+KGNER+TAGG +K+AKPRQ+S KKS+G
Sbjct: 104 LREVTIVKSHA--TKRPSVSKVMLKGNERITAGGLVKKAKPRQRSTKKSLG 152