BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1180.p (158 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774804.1| transcription elongation factor protein [Her... 250 4e-65 ref|YP_004753151.1| transcription elongation factor GreA [Collim... 239 1e-61 ref|YP_001099471.1| putative transcription elongation factor and... 228 3e-58 ref|ZP_08275233.1| Transcription elongation factor GreA [Oxaloba... 225 2e-57 ref|YP_001353931.1| GreA transcription elongation factor [Janthi... 221 4e-56 >ref|YP_003774804.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] emb|CAM32544.1| Transcription elongation factor protein [Herbaspirillum seropedicae] gb|ADJ62896.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 158 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 153/158 (96%), Positives = 158/158 (100%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKERPDVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MSTVPLTKRGAELLKEELHRLKTK+RP+VINAIAEARAQGDLSENAEYESAKERQAFIEG Sbjct: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV Sbjct: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGVREYEILKVRYV 158 SVTSPIARALIGKSAGDVVAVEAPSG++EYEIL+VRYV Sbjct: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 >ref|YP_004753151.1| transcription elongation factor GreA [Collimonas fungivorans Ter331] gb|AEK62328.1| Transcription elongation factor GreA [Collimonas fungivorans Ter331] Length = 180 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 129/158 (81%), Positives = 147/158 (93%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKERPDVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MS+VPLTK GA+LLK+ELH LKTKER VI AIAEARA GDLSENA+Y++AKERQ F+EG Sbjct: 23 MSSVPLTKHGAQLLKDELHHLKTKERQAVIKAIAEARAHGDLSENADYDAAKERQGFVEG 82 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RIADLEGKLGAAQI+DPA L+A+GRVVFASTVDLE+L+SG+KVTYQIVG DEADIK SKV Sbjct: 83 RIADLEGKLGAAQIIDPATLDADGRVVFASTVDLEDLESGDKVTYQIVGTDEADIKMSKV 142 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGVREYEILKVRYV 158 SVTSPIARALIGK+AGDVV V+APSG+REYEIL+VRY+ Sbjct: 143 SVTSPIARALIGKTAGDVVGVQAPSGIREYEILEVRYI 180 >ref|YP_001099471.1| putative transcription elongation factor and transcript cleavage [Herminiimonas arsenicoxydans] emb|CAL61344.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Herminiimonas arsenicoxydans] Length = 157 Score = 228 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 122/156 (78%), Positives = 145/156 (92%) Query: 3 TVPLTKRGAELLKEELHRLKTKERPDVINAIAEARAQGDLSENAEYESAKERQAFIEGRI 62 T P+T GA L+KEELHRLKTKERP VINAIAEARAQGDLSENA+Y++AKE+Q+FIEGRI Sbjct: 2 TTPITPHGANLMKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRI 61 Query: 63 ADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKVSV 122 ADLEGKLG +QI+DP L A+GR+VFA+TVDLE+LDSG+KVTYQIVG+DEAD+KE KVS+ Sbjct: 62 ADLEGKLGTSQIIDPTTLEADGRIVFAATVDLEDLDSGDKVTYQIVGIDEADLKEKKVSI 121 Query: 123 TSPIARALIGKSAGDVVAVEAPSGVREYEILKVRYV 158 TSPIARA+IGKS GDVVAVEAP+G+REYE+L+VRY+ Sbjct: 122 TSPIARAMIGKSVGDVVAVEAPAGIREYEVLQVRYI 157 >ref|ZP_08275233.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium IMCC9480] gb|EGF31291.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium IMCC9480] Length = 158 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 123/158 (77%), Positives = 147/158 (93%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKERPDVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MSTVP+TK GA+LLKEELHRLKTKERP +INAI+EARAQGDLSENAEY++AKERQ+FIEG Sbjct: 1 MSTVPITKFGAQLLKEELHRLKTKERPSIINAISEARAQGDLSENAEYDAAKERQSFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RI+DLEGKLG++QI+DP L A+GR+VF STV LE+L++G+KVTYQIVG DEAD+K+ KV Sbjct: 61 RISDLEGKLGSSQIIDPLTLEADGRIVFGSTVYLEDLETGDKVTYQIVGTDEADLKQLKV 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGVREYEILKVRYV 158 SVTSPIARALIGK AGDVV V+AP+GVREYE+L+VRY+ Sbjct: 121 SVTSPIARALIGKVAGDVVGVQAPAGVREYEVLEVRYI 158 >ref|YP_001353931.1| GreA transcription elongation factor [Janthinobacterium sp. Marseille] gb|ABR88838.1| GreA transcription elongation factor [Janthinobacterium sp. Marseille] Length = 157 Score = 221 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 121/156 (77%), Positives = 144/156 (92%) Query: 3 TVPLTKRGAELLKEELHRLKTKERPDVINAIAEARAQGDLSENAEYESAKERQAFIEGRI 62 + P+T GA +LKEELHRLKTKERP VINAIAEARAQGDLSENA+Y++AKE+Q+FIEGRI Sbjct: 2 STPITPYGANVLKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRI 61 Query: 63 ADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKVSV 122 AD+EGKLG +Q++DP L AEGRVVFA+TVDLE+L+SGEKVTYQIVG+DEAD+KE KVS+ Sbjct: 62 ADIEGKLGTSQVIDPTTLEAEGRVVFAATVDLEDLESGEKVTYQIVGIDEADLKEKKVSI 121 Query: 123 TSPIARALIGKSAGDVVAVEAPSGVREYEILKVRYV 158 TSPIARA+IGK AGDVV VEAP+G+REYEIL+VRY+ Sbjct: 122 TSPIARAMIGKYAGDVVGVEAPAGLREYEILQVRYI 157