BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1178.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774802.1| carbamoyl-phosphate synthase small subunit [... 668 0.0 ref|YP_004753153.1| carbamoyl-phosphate synthase small chain [Co... 630 e-178 ref|YP_001353933.1| carbamoylphosphate synthase small subunit [J... 604 e-171 ref|YP_001099469.1| carbamoyl phosphate synthetase, glutamine am... 597 e-169 ref|YP_296385.1| carbamoyl phosphate synthase small subunit [Ral... 556 e-156 >ref|YP_003774802.1| carbamoyl-phosphate synthase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ62894.1| carbamoyl-phosphate synthase (small chain) protein [Herbaspirillum seropedicae SmR1] Length = 387 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 343/345 (99%), Positives = 345/345 (100%) Query: 1 MTGYQEILTDPSYSRQIVTLTYPHIGNTGVNREDVEASQIHAAGLIIKDLPRLLSNFRSQ 60 MTGYQEILTDPSYSRQIVTLTYPHIGNTGVNREDVEASQIHAAGLIIKDLPRLLSNFRSQ Sbjct: 43 MTGYQEILTDPSYSRQIVTLTYPHIGNTGVNREDVEASQIHAAGLIIKDLPRLLSNFRSQ 102 Query: 61 QSLSDYLKEGNIVSIAGIDTRKLTRILREKGAQNGAIVAGEADIAAATAKALELARAFPG 120 QSLSDYLKEGNIVSIAGIDTRKLTRILREKGAQNGAIVAGEADIAAATAKALELARAFPG Sbjct: 103 QSLSDYLKEGNIVSIAGIDTRKLTRILREKGAQNGAIVAGEADIAAATAKALELARAFPG 162 Query: 121 LAGMDLAKVVSTRKAYNWTETEWRLGRGYGQQITPKFHVVAFDYGVKFNILRMLAERGCK 180 LAGMDLAKVVST+KAYNWTETEWRLGRGYGQQITPKFHVVAFDYGVK+NILRMLAERGCK Sbjct: 163 LAGMDLAKVVSTQKAYNWTETEWRLGRGYGQQITPKFHVVAFDYGVKYNILRMLAERGCK 222 Query: 181 VTVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIERGIPTFGICLGHQIM 240 VTVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIERGIPTFGICLGHQIM Sbjct: 223 VTVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIERGIPTFGICLGHQIM 282 Query: 241 ALASGAKTLKMKFGHHGANHPVQDLDSKQVMITSQNHGFAVDQATLPANCRVTHVSLFDG 300 ALASGAKTLKMKFGHHGANHPVQDLDSKQVMITSQNHGFAVDQATLPANCRVTHVSLFDG Sbjct: 283 ALASGAKTLKMKFGHHGANHPVQDLDSKQVMITSQNHGFAVDQATLPANCRVTHVSLFDG 342 Query: 301 SLQGFERTDKPAFCFQGHPEASPGPHDIAPLFDKFVAMMEKKQNA 345 SLQGFERTDKPAFCFQGHPEASPGPHDIAPLFDKFVAMMEKKQNA Sbjct: 343 SLQGFERTDKPAFCFQGHPEASPGPHDIAPLFDKFVAMMEKKQNA 387 >ref|YP_004753153.1| carbamoyl-phosphate synthase small chain [Collimonas fungivorans Ter331] gb|AEK62330.1| Carbamoyl-phosphate synthase small chain [Collimonas fungivorans Ter331] Length = 392 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 309/350 (88%), Positives = 332/350 (94%), Gaps = 5/350 (1%) Query: 1 MTGYQEILTDPSYSRQIVTLTYPHIGNTGVNREDVEASQIHAAGLIIKDLPRLLSNFRSQ 60 MTGYQEILTDPSYSRQIVTLTYPHIGNTGVN ED+E+SQIHAAGLII+DLPRL+SNFRS Sbjct: 43 MTGYQEILTDPSYSRQIVTLTYPHIGNTGVNEEDIESSQIHAAGLIIRDLPRLVSNFRST 102 Query: 61 QSLSDYLKEGNIVSIAGIDTRKLTRILREKGAQNGAIVAGEADIAAATAKALELARAFPG 120 ++L YL+E NIV+IAGIDTRKLTRILREKGAQ GAIVAGE+DIAAATAKALELAR FPG Sbjct: 103 KTLDAYLQESNIVAIAGIDTRKLTRILREKGAQGGAIVAGESDIAAATAKALELARGFPG 162 Query: 121 LAGMDLAKVVSTRKAYNWTETEWRLGRGYGQQITPKFHVVAFDYGVKFNILRMLAERGCK 180 LAGMDLAKVVST KAY+W+ETEWRLGRGY QQITPK+HVVAFDYGVKFNILRMLA+RGCK Sbjct: 163 LAGMDLAKVVSTTKAYSWSETEWRLGRGYDQQITPKYHVVAFDYGVKFNILRMLAQRGCK 222 Query: 181 VTVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIERGIPTFGICLGHQIM 240 +TVLPAQA+AA+ALALNPDGIFLSNGPGDPEPCDYAIAA+KELIERG+PTFGICLGHQIM Sbjct: 223 ITVLPAQASAADALALNPDGIFLSNGPGDPEPCDYAIAATKELIERGVPTFGICLGHQIM 282 Query: 241 ALASGAKTLKMKFGHHGANHPVQDLDSKQVMITSQNHGFAVDQATLPANCRVTHVSLFDG 300 ALASGAKTLKMKFGHHGANHPVQDLDSKQV+ITSQNHGFAVD ATLPANCRVTHVSLFDG Sbjct: 283 ALASGAKTLKMKFGHHGANHPVQDLDSKQVLITSQNHGFAVDGATLPANCRVTHVSLFDG 342 Query: 301 SLQGFERTDKPAFCFQGHPEASPGPHDIAPLFDKFV-----AMMEKKQNA 345 SLQGF RTDKPAFCFQGHPEASPGPHDIAPLFD+F+ M+EK +NA Sbjct: 343 SLQGFARTDKPAFCFQGHPEASPGPHDIAPLFDRFIQLMNQTMLEKNKNA 392 >ref|YP_001353933.1| carbamoylphosphate synthase small subunit [Janthinobacterium sp. Marseille] gb|ABR89219.1| carbamoylphosphate synthase small subunit [Janthinobacterium sp. Marseille] Length = 384 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 299/345 (86%), Positives = 322/345 (93%), Gaps = 3/345 (0%) Query: 1 MTGYQEILTDPSYSRQIVTLTYPHIGNTGVNREDVEASQIHAAGLIIKDLPRLLSNFRSQ 60 MTGYQEILTDPSYS QIVTLTYPHIGNTGVN EDVE+++IHAAGLIIKDLP L+SNFRS Sbjct: 43 MTGYQEILTDPSYSNQIVTLTYPHIGNTGVNAEDVESTRIHAAGLIIKDLPILISNFRST 102 Query: 61 QSLSDYLKEGNIVSIAGIDTRKLTRILREKGAQNGAIVAGEADIAAATAKALELARAFPG 120 Q+LSDYLK N+V IAGIDTRKLTRILREKGAQ+GAI+AGE A KALELA++F G Sbjct: 103 QTLSDYLKSENVVGIAGIDTRKLTRILREKGAQSGAILAGED---ATAEKALELAKSFGG 159 Query: 121 LAGMDLAKVVSTRKAYNWTETEWRLGRGYGQQITPKFHVVAFDYGVKFNILRMLAERGCK 180 LAG+DLAKVVST+++Y WTETEW LG GYGQQ P++HVVAFDYGVKFNILRMLA+RGCK Sbjct: 160 LAGLDLAKVVSTKQSYPWTETEWTLGEGYGQQTAPQYHVVAFDYGVKFNILRMLAQRGCK 219 Query: 181 VTVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIERGIPTFGICLGHQIM 240 VTVLPAQA+AAEALALNPDGIFLSNGPGDPEPCDYAIAASKELI+RGIPTFGICLGHQIM Sbjct: 220 VTVLPAQASAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIDRGIPTFGICLGHQIM 279 Query: 241 ALASGAKTLKMKFGHHGANHPVQDLDSKQVMITSQNHGFAVDQATLPANCRVTHVSLFDG 300 ALASGAKTLKMKFGHHGANHPVQDLDSK+V+ITSQNHGFAVD ATLP NCRVTHVSLFDG Sbjct: 280 ALASGAKTLKMKFGHHGANHPVQDLDSKKVLITSQNHGFAVDAATLPVNCRVTHVSLFDG 339 Query: 301 SLQGFERTDKPAFCFQGHPEASPGPHDIAPLFDKFVAMMEKKQNA 345 SLQGFERTDKPAFCFQGHPEASPGPHDIAPLFD+FVAMMEK +NA Sbjct: 340 SLQGFERTDKPAFCFQGHPEASPGPHDIAPLFDRFVAMMEKNKNA 384 >ref|YP_001099469.1| carbamoyl phosphate synthetase, glutamine amidotransferase small subunit [Herminiimonas arsenicoxydans] emb|CAL61342.1| carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (Carbamoyl-phosphate synthetase glutamine chain) [Herminiimonas arsenicoxydans] Length = 342 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 295/345 (85%), Positives = 319/345 (92%), Gaps = 3/345 (0%) Query: 1 MTGYQEILTDPSYSRQIVTLTYPHIGNTGVNREDVEASQIHAAGLIIKDLPRLLSNFRSQ 60 MTGYQEILTDPSYS Q+VTLTYPHIGNTGVN EDVE+ +IHAAGLIIKDLP L+SNFRS Sbjct: 1 MTGYQEILTDPSYSNQLVTLTYPHIGNTGVNAEDVESFKIHAAGLIIKDLPILVSNFRST 60 Query: 61 QSLSDYLKEGNIVSIAGIDTRKLTRILREKGAQNGAIVAGEADIAAATAKALELARAFPG 120 Q+LSDYLK NI+ IAGIDTRKLTRILREKGAQ+GAI+AGE A KAL LA+ F G Sbjct: 61 QTLSDYLKSENIIGIAGIDTRKLTRILREKGAQSGAILAGED---ATAEKALALAKTFGG 117 Query: 121 LAGMDLAKVVSTRKAYNWTETEWRLGRGYGQQITPKFHVVAFDYGVKFNILRMLAERGCK 180 LAG+DLAKVVST+ +Y W ETEW+LG+GYG+QITPK+HVVA+DYGVKFNILRMLAERGCK Sbjct: 118 LAGLDLAKVVSTKASYPWNETEWKLGKGYGKQITPKYHVVAYDYGVKFNILRMLAERGCK 177 Query: 181 VTVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIERGIPTFGICLGHQIM 240 VTVLPAQATAAEALAL PDGIFLSNGPGDP+PCDYAIAA+KELIERGIPTFGICLGHQIM Sbjct: 178 VTVLPAQATAAEALALKPDGIFLSNGPGDPQPCDYAIAATKELIERGIPTFGICLGHQIM 237 Query: 241 ALASGAKTLKMKFGHHGANHPVQDLDSKQVMITSQNHGFAVDQATLPANCRVTHVSLFDG 300 ALASGAKT KM FGHHGANHPVQDLDSK+V+ITSQNHGFAVD ATLPANCRVTHVSLFDG Sbjct: 238 ALASGAKTFKMGFGHHGANHPVQDLDSKKVLITSQNHGFAVDAATLPANCRVTHVSLFDG 297 Query: 301 SLQGFERTDKPAFCFQGHPEASPGPHDIAPLFDKFVAMMEKKQNA 345 SLQGFERTD+PAFCFQGHPEASPGPHDIAPLFD+FVAMMEK +NA Sbjct: 298 SLQGFERTDQPAFCFQGHPEASPGPHDIAPLFDRFVAMMEKNKNA 342 >ref|YP_296385.1| carbamoyl phosphate synthase small subunit [Ralstonia eutropha JMP134] gb|AAZ61541.1| carbamoyl-phosphate synthase small subunit [Ralstonia eutropha JMP134] Length = 378 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 270/339 (79%), Positives = 303/339 (89%), Gaps = 4/339 (1%) Query: 1 MTGYQEILTDPSYSRQIVTLTYPHIGNTGVNREDVEASQIHAAGLIIKDLPRLLSNFRSQ 60 +TGYQEILTDPSYSRQIVTLTYPHIGN GVNREDVEA+++HAAGLIIKDLP L SNFR + Sbjct: 39 ITGYQEILTDPSYSRQIVTLTYPHIGNYGVNREDVEATKVHAAGLIIKDLPILASNFRKE 98 Query: 61 QSLSDYLKEGNIVSIAGIDTRKLTRILREKGAQNGAIVAGEADIAAATAKALELARAFPG 120 +L YLK+ +V+IAGIDTRKLTRILREKGAQNG I+AGE ++ KA++LAR+FPG Sbjct: 99 HTLGHYLKQEKVVAIAGIDTRKLTRILREKGAQNGCILAGEDNVQ----KAIDLARSFPG 154 Query: 121 LAGMDLAKVVSTRKAYNWTETEWRLGRGYGQQITPKFHVVAFDYGVKFNILRMLAERGCK 180 LAGMDLAKVVS ++ Y+WT++EW LG+GYG+Q P+FHVVA+DYGVKFNILRMLAERGCK Sbjct: 155 LAGMDLAKVVSVKEPYDWTQSEWELGQGYGKQDKPQFHVVAYDYGVKFNILRMLAERGCK 214 Query: 181 VTVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIERGIPTFGICLGHQIM 240 VTVLPAQATAA+ALALNPDG+FLSNGPGDPEPCDYAI A++E IERGIPTFGICLGHQIM Sbjct: 215 VTVLPAQATAADALALNPDGVFLSNGPGDPEPCDYAIKATREFIERGIPTFGICLGHQIM 274 Query: 241 ALASGAKTLKMKFGHHGANHPVQDLDSKQVMITSQNHGFAVDQATLPANCRVTHVSLFDG 300 ALA GAKTLKMK GHHGANHPV+DLD +VMITSQNHGFAVD TLPAN R THVSLFDG Sbjct: 275 ALAIGAKTLKMKAGHHGANHPVKDLDDGRVMITSQNHGFAVDAETLPANARATHVSLFDG 334 Query: 301 SLQGFERTDKPAFCFQGHPEASPGPHDIAPLFDKFVAMM 339 +LQGF TDKPAFCFQGHPEASPGPHD+A LFD+F MM Sbjct: 335 TLQGFALTDKPAFCFQGHPEASPGPHDVAYLFDRFTKMM 373