BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1173.p (196 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774797.1| hypothetical protein Hsero_1373 [Herbaspiril... 318 3e-85 ref|YP_001860025.1| hypothetical protein Bphy_3848 [Burkholderia... 214 4e-54 ref|ZP_03267735.1| protein of unknown function UPF0029 [Burkhold... 213 2e-53 ref|YP_299303.1| hypothetical protein Reut_B5111 [Ralstonia eutr... 212 3e-53 ref|ZP_06844073.1| protein of unknown function UPF0029 [Burkhold... 211 4e-53 >ref|YP_003774797.1| hypothetical protein Hsero_1373 [Herbaspirillum seropedicae SmR1] gb|ADJ62889.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 196 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 182/196 (92%), Positives = 192/196 (97%) Query: 1 MATFTIARRAEIELEIRKSRFIGIVMPVPGREAAMQEIARMREAHRSATHVCWALMAGGQ 60 MATFT+A+R EIELEIRKSRFIGIVMPVPGREAAMQEIARMR+AHRSATHVCWALMAGGQ Sbjct: 1 MATFTLAQRVEIELEIRKSRFIGIVMPVPGREAAMQEIARMRDAHRSATHVCWALMAGGQ 60 Query: 61 SGMSDDGEPSGTAGRPMLEVLRHHELDGVLAMVVRYYGGVKLGAGGLVRAYTEAIATALK 120 SGMSDDGEPSGTAGRPMLEVLRHHELDGVLAMVVRY+GGVKLGAGGLVRAYT+AIA+ALK Sbjct: 61 SGMSDDGEPSGTAGRPMLEVLRHHELDGVLAMVVRYFGGVKLGAGGLVRAYTDAIASALK 120 Query: 121 STERTERVAQAEIEIGVVYSAEPQLRHWLAQQKYELLDSRHDTLAHLHLRLPEAALSQAE 180 +R ERVAQAE+EIGVVYSAEPQLRHWLAQQKYELLDSRHDTLA+LHLRLPEAAL+QAE Sbjct: 121 QAQRIERVAQAELEIGVVYSAEPQLRHWLAQQKYELLDSRHDTLAYLHLRLPEAALAQAE 180 Query: 181 EAIRRLSSNAEIKRII 196 EAIRRLSSNAEIKRII Sbjct: 181 EAIRRLSSNAEIKRII 196 >ref|YP_001860025.1| hypothetical protein Bphy_3848 [Burkholderia phymatum STM815] gb|ACC72979.1| protein of unknown function UPF0029 [Burkholderia phymatum STM815] Length = 290 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 115/194 (59%), Positives = 145/194 (74%) Query: 1 MATFTIARRAEIELEIRKSRFIGIVMPVPGREAAMQEIARMREAHRSATHVCWALMAGGQ 60 + TFT+ + ELEIRKSRFI +PV R+AAM E+ R+REAH +ATHVCWAL+AGGQ Sbjct: 94 LPTFTLPSALQAELEIRKSRFIAYAIPVADRDAAMDELRRLREAHPAATHVCWALLAGGQ 153 Query: 61 SGMSDDGEPSGTAGRPMLEVLRHHELDGVLAMVVRYYGGVKLGAGGLVRAYTEAIATALK 120 SGMSDDGEPSGTAGRP+LEVLRHH+LDGVLA VVRYYGGVKLGAGGLVRAYT+AIATAL+ Sbjct: 154 SGMSDDGEPSGTAGRPILEVLRHHDLDGVLAAVVRYYGGVKLGAGGLVRAYTDAIATALQ 213 Query: 121 STERTERVAQAEIEIGVVYSAEPQLRHWLAQQKYELLDSRHDTLAHLHLRLPEAALSQAE 180 R ER+A A +EI + Y+ E ++R W+ Q+ + L S + L +R+P A+ A Sbjct: 214 DAPRVERIALASLEIEIGYADEARVRRWIEQENHVLEASAYGMSVQLTIRMPVTAIDGAR 273 Query: 181 EAIRRLSSNAEIKR 194 EA+R ++ + R Sbjct: 274 EALRDMTQGRAVFR 287 >ref|ZP_03267735.1| protein of unknown function UPF0029 [Burkholderia sp. H160] gb|EEA00692.1| protein of unknown function UPF0029 [Burkholderia sp. H160] Length = 217 Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 108/183 (59%), Positives = 136/183 (74%) Query: 1 MATFTIARRAEIELEIRKSRFIGIVMPVPGREAAMQEIARMREAHRSATHVCWALMAGGQ 60 + T+T+ ELEIRKSRFI +PV R+AAM E+ R+R+ H +ATHVCWAL+AGGQ Sbjct: 24 LPTYTLPAPLSAELEIRKSRFIAHAIPVADRDAAMAELQRLRDEHPAATHVCWALLAGGQ 83 Query: 61 SGMSDDGEPSGTAGRPMLEVLRHHELDGVLAMVVRYYGGVKLGAGGLVRAYTEAIATALK 120 SGMSDDGEPSGTAGRP+LEVLRHH+LDGVLA VVRYYGGVKLGAGGLVRAYT+AIA+AL Sbjct: 84 SGMSDDGEPSGTAGRPILEVLRHHDLDGVLAAVVRYYGGVKLGAGGLVRAYTDAIASALL 143 Query: 121 STERTERVAQAEIEIGVVYSAEPQLRHWLAQQKYELLDSRHDTLAHLHLRLPEAALSQAE 180 R ER+AQ + + V Y+ E ++R W+ + Y L+DS + L + +R+P AL A Sbjct: 144 DAPRVERIAQVSLSVEVTYADEAKVRRWMDAEGYALVDSAYGMLVKMTMRVPANALDDAR 203 Query: 181 EAI 183 + Sbjct: 204 RTL 206 >ref|YP_299303.1| hypothetical protein Reut_B5111 [Ralstonia eutropha JMP134] gb|AAZ64459.1| Protein of unknown function UPF0029 [Ralstonia eutropha JMP134] Length = 213 Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 115/187 (61%), Positives = 142/187 (75%), Gaps = 3/187 (1%) Query: 1 MATFTIARRAEIELEIRKSRFIGIVMPVPGREAAMQEIARMREAHRSATHVCWALMAGGQ 60 + T+T+A + ELEIRKSRF+ + +PVP R+AAM + +R H +ATHVCWAL+AGGQ Sbjct: 8 LPTYTLAAPVDAELEIRKSRFLALAIPVPDRDAAMAVLQSLRAQHPAATHVCWALLAGGQ 67 Query: 61 SGMSDDGEPSGTAGRPMLEVLRHHELDGVLAMVVRYYGGVKLGAGGLVRAYTEAIATALK 120 SGMSDDGEPSGTAGRP+LEVLRHH+LDGVLA VVRYYGGVKLGAGGLVRAYT+AIA ALK Sbjct: 68 SGMSDDGEPSGTAGRPILEVLRHHDLDGVLAAVVRYYGGVKLGAGGLVRAYTDAIAAALK 127 Query: 121 STERTERVAQAEIEIGVVYSAEPQLRHWL---AQQKYELLDSRHDTLAHLHLRLPEAALS 177 S ER ER+A AE+ + V Y+ EP++R WL AQ L D+ + +A L +RLP Sbjct: 128 SAERVERIAYAELAVEVDYADEPRVRRWLEQAAQDGCTLADTAYGAMARLVIRLPANQRD 187 Query: 178 QAEEAIR 184 A+ A+R Sbjct: 188 AAQAALR 194 >ref|ZP_06844073.1| protein of unknown function UPF0029 [Burkholderia sp. Ch1-1] gb|EFG68233.1| protein of unknown function UPF0029 [Burkholderia sp. Ch1-1] Length = 250 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 109/183 (59%), Positives = 138/183 (75%) Query: 1 MATFTIARRAEIELEIRKSRFIGIVMPVPGREAAMQEIARMREAHRSATHVCWALMAGGQ 60 + T+T+ ELEIRKSRFI +PV R+AAM E+ R+R+ H +ATHVCWAL+AGGQ Sbjct: 57 LPTYTLPAPLSAELEIRKSRFIAYAIPVADRDAAMAELRRLRDEHPAATHVCWALLAGGQ 116 Query: 61 SGMSDDGEPSGTAGRPMLEVLRHHELDGVLAMVVRYYGGVKLGAGGLVRAYTEAIATALK 120 SGMSDDGEPSGTAGRP+LEVLRHH+LDGVLA VVRYYGGVKLGAGGLVRAYT+AIA+AL Sbjct: 117 SGMSDDGEPSGTAGRPILEVLRHHDLDGVLAAVVRYYGGVKLGAGGLVRAYTDAIASALL 176 Query: 121 STERTERVAQAEIEIGVVYSAEPQLRHWLAQQKYELLDSRHDTLAHLHLRLPEAALSQAE 180 R ER+AQ + + V Y+ E ++R W+ + Y L+DS + L + +RLP A+ A+ Sbjct: 177 DAPRVERIAQVSLTVEVSYADEAKVRRWIDAEGYALMDSAYAMLVKMTIRLPVNAVDNAQ 236 Query: 181 EAI 183 A+ Sbjct: 237 RAL 239