BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1171.p (221 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774795.1| transcription regulator protein [Herbaspiril... 261 5e-68 ref|YP_001353280.1| transcriptional regulator [Janthinobacterium... 243 2e-62 ref|ZP_02958646.1| hypothetical protein PROSTU_00393 [Providenci... 228 5e-58 ref|ZP_06127726.1| putative transcriptional regulator [Providenc... 222 3e-56 ref|ZP_05974373.1| putative transcriptional regulator [Providenc... 218 4e-55 >ref|YP_003774795.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62887.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 151/207 (72%), Positives = 173/207 (83%), Gaps = 1/207 (0%) Query: 12 PSTAERLLLRLKTRGPASTAELAGELQITPEAARQQLQKLAAEGLICPRQVQTTVRAGRP 71 PSTA+R+LLRLKTRGPAS +ELAGEL+++ EAARQQ+QKLA +GLI + RAGRP Sbjct: 15 PSTADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLI-ASRQAAAARAGRP 73 Query: 72 RQDWELTGAGHRRFPDTHAQLTVQLIGSIRQLFGEPGLHKLIDQREQDMRADYLLQCDGI 131 RQDWELT AGH RFPDTHAQLTVQLIGSIRQLFG+ GL KLI+QRE MRA+Y C + Sbjct: 74 RQDWELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREVQMRAEYQQHCGRL 133 Query: 132 TAPGKRLQRLAELRTAEGYMARVEKQGRDWLLIEDHCPICAAASTCQGFCRSELQLFGEV 191 + ++L++LAELR+AEGYMARVEK G+ WLLIEDHCPICAAA +CQGFCRSELQLFGEV Sbjct: 134 NSLPRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQGFCRSELQLFGEV 193 Query: 192 LGEEFAITREEHLPAGGRRCVYRIRRL 218 LGE+ ITREEHL A GRRCVYRI L Sbjct: 194 LGEQAEITREEHLLAEGRRCVYRITAL 220 >ref|YP_001353280.1| transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR88594.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 216 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 132/215 (61%), Positives = 161/215 (74%), Gaps = 2/215 (0%) Query: 1 MRDESSAADTGPSTAERLLLRLKTRGPASTAELAGELQITPEAARQQLQKLAAEGLICPR 60 M S+ + +T ER+LL +KT+GP STAELA EL +T EAARQQ+QKL GLI + Sbjct: 1 MNYASNYFENKDATHERMLLLIKTKGPISTAELAQELNMTAEAARQQVQKLMTAGLIAGQ 60 Query: 61 QVQTTVRAGRPRQDWELTGAGHRRFPDTHAQLTVQLIGSIRQLFGEPGLHKLIDQREQDM 120 Q + + GRPRQ+W LT AG+ RFPDTHAQLTVQL+GS+RQLFGE GL ++I QRE++ Sbjct: 61 Q-EASTGVGRPRQNWVLTEAGYARFPDTHAQLTVQLLGSVRQLFGEEGLERMISQREEET 119 Query: 121 RADYLLQCDGITAPGKRLQRLAELRTAEGYMARVEKQGRDWLLIEDHCPICAAASTCQGF 180 R YL C +RLQ LAE+R+AEGYMARVE+ G+DWLLIEDHCPIC AA TCQGF Sbjct: 120 RVVYLQACSS-KKLAERLQSLAEVRSAEGYMARVERDGKDWLLIEDHCPICFAARTCQGF 178 Query: 181 CRSELQLFGEVLGEEFAITREEHLPAGGRRCVYRI 215 CRSEL+LF EV+G+E + RE+HL A RCVYRI Sbjct: 179 CRSELRLFQEVVGDEATVIREQHLLADAGRCVYRI 213 >ref|ZP_02958646.1| hypothetical protein PROSTU_00393 [Providencia stuartii ATCC 25827] gb|EDU61504.1| hypothetical protein PROSTU_00393 [Providencia stuartii ATCC 25827] Length = 220 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 109/203 (53%), Positives = 148/203 (72%), Gaps = 1/203 (0%) Query: 16 ERLLLRLKTRGPASTAELAGELQITPEAARQQLQKLAAEGLICPRQVQTTVRAGRPRQDW 75 +++L +KT+GP STA +A +L +T EAARQ +QKL + GL+ Q + AGRPRQ+W Sbjct: 18 DKVLFCIKTKGPISTAVIAKDLAMTGEAARQHIQKLTSLGLVEGVQCTSQTGAGRPRQNW 77 Query: 76 ELTGAGHRRFPDTHAQLTVQLIGSIRQLFGEPGLHKLIDQREQDMRADYLLQCDGITAPG 135 LT GH+RFPDTHAQLT+QLI S++ +FG GL KLI QRE +++A YL +C G Sbjct: 78 VLTALGHQRFPDTHAQLTLQLIDSVKNIFGNEGLEKLISQREGEVKAKYLSRC-GSLPFV 136 Query: 136 KRLQRLAELRTAEGYMARVEKQGRDWLLIEDHCPICAAASTCQGFCRSELQLFGEVLGEE 195 +RLQ LA++R EGYMA +E+ G WL IE+HCPICAAA+ CQ FCRSELQLF +++G + Sbjct: 137 ERLQALADVRNEEGYMAHIEQDGNSWLFIENHCPICAAATVCQNFCRSELQLFRDIMGSD 196 Query: 196 FAITREEHLPAGGRRCVYRIRRL 218 + RE++L G RCVYR+R++ Sbjct: 197 VTVEREQYLLNGAGRCVYRVRQM 219 >ref|ZP_06127726.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] gb|EFE51381.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] Length = 220 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 106/201 (52%), Positives = 145/201 (72%), Gaps = 1/201 (0%) Query: 16 ERLLLRLKTRGPASTAELAGELQITPEAARQQLQKLAAEGLICPRQVQTTVRAGRPRQDW 75 +++L +KT+GP STA +A +L +T EAARQ +QKL + GL+ Q + AGRPRQ+W Sbjct: 18 DKVLFCIKTKGPISTAVIANDLNMTGEAARQHIQKLTSLGLVEGAQCLSQTGAGRPRQNW 77 Query: 76 ELTGAGHRRFPDTHAQLTVQLIGSIRQLFGEPGLHKLIDQREQDMRADYLLQCDGITAPG 135 LT GH+RFPDTHAQL +QLI S++ +FG+ GL KLI QRE + R Y +C + Sbjct: 78 VLTELGHQRFPDTHAQLALQLINSVQTIFGDEGLEKLISQREMESREKYFARCKNLPL-A 136 Query: 136 KRLQRLAELRTAEGYMARVEKQGRDWLLIEDHCPICAAASTCQGFCRSELQLFGEVLGEE 195 +RL+ LAE+R+ EGYMA+VE+ WL IE+HCPICAAA+ CQ FCRSEL LF E++G++ Sbjct: 137 ERLEELAEVRSEEGYMAKVEQDDNSWLFIENHCPICAAATACQNFCRSELALFSEIVGDD 196 Query: 196 FAITREEHLPAGGRRCVYRIR 216 +I RE++L G RCVYR++ Sbjct: 197 GSIEREQYLLNGAGRCVYRVK 217 >ref|ZP_05974373.1| putative transcriptional regulator [Providencia rustigianii DSM 4541] gb|EFB70664.1| putative transcriptional regulator [Providencia rustigianii DSM 4541] Length = 223 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 109/200 (54%), Positives = 144/200 (72%), Gaps = 1/200 (0%) Query: 16 ERLLLRLKTRGPASTAELAGELQITPEAARQQLQKLAAEGLICPRQVQTTVRAGRPRQDW 75 +++L +KT+GP ST+ +A +L +T EAARQ +QKL + GL+ Q AGRPRQ+W Sbjct: 18 DKVLFCIKTKGPISTSVIANDLNLTGEAARQHVQKLTSLGLVEGVQCAAQSGAGRPRQNW 77 Query: 76 ELTGAGHRRFPDTHAQLTVQLIGSIRQLFGEPGLHKLIDQREQDMRADYLLQCDGITAPG 135 LT GH+RFPDTHAQL +QLI S+R +FG+ GL KLI+QRE + R YL +C + Sbjct: 78 VLTELGHQRFPDTHAQLALQLIDSVRTIFGDDGLEKLIEQREAESRTKYLARCKNLPL-A 136 Query: 136 KRLQRLAELRTAEGYMARVEKQGRDWLLIEDHCPICAAASTCQGFCRSELQLFGEVLGEE 195 +RL LAE+R+ EGYMA+VE+ G WL IE+HCPICAAA+ CQ FCRSEL LF +V+GEE Sbjct: 137 QRLAELAEVRSEEGYMAKVEQDGDSWLFIENHCPICAAATACQNFCRSELALFRDVVGEE 196 Query: 196 FAITREEHLPAGGRRCVYRI 215 + RE++L G RCVYR+ Sbjct: 197 AQVDREQYLLDGAGRCVYRV 216