BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1169.p (285 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004356503.1| hypothetical protein PSEBR_a5065 [Pseudomona... 254 1e-65 ref|ZP_03545986.1| hypothetical protein CtesDRAFT_PD5220 [Comamo... 131 1e-28 ref|ZP_07045352.1| hypothetical protein CTS44_14203 [Comamonas t... 127 2e-27 ref|YP_003280715.1| hypothetical protein CtCNB1_4673 [Comamonas ... 125 9e-27 ref|ZP_06062268.1| conserved hypothetical protein [Acinetobacter... 102 9e-20 >ref|YP_004356503.1| hypothetical protein PSEBR_a5065 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA71499.1| Hypothetical protein PSEBR_a5065 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 284 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 143/275 (52%), Positives = 176/275 (64%), Gaps = 3/275 (1%) Query: 8 FDPVLFIKDGPSKPLLDPKQYPYMCNDRGVGSQSETPVGEIITLAPEAPALERGATYRDI 67 F+ V FI DG ++ LDP+++PY+ ND G+ S G +I L+PE P+L G Y I Sbjct: 4 FNSVPFIGDG-AETALDPRRFPYLFNDHGLAQPSVQVRGNLIQLSPENPSLSVGTRYSGI 62 Query: 68 AHWQRTVTPKDWPSYEITEFDFRVPEVRYEPLPATPENTQAFGATLLRDGQCLHFPFDNL 127 + W+ P + SY I FDF EV Y P+ AT E QAFG TLL +G+CL F +D L Sbjct: 63 S-WRDREVPTNTGSYWIKTFDFHASEVHYAPIWATRETAQAFGMTLLGNGECLRFEYDQL 121 Query: 128 VMADYTYGKWAGYESPYLGDGRSRELLTWNATDLEYHYFAHIFFSR-GPEPLVITVARWR 186 ++ YTYGKWAG++SPYLG R RELLT+N TDLEYH F H FFSR G PLVI+VARWR Sbjct: 122 ILGQYTYGKWAGHQSPYLGPARQRELLTYNPTDLEYHNFPHAFFSRYGRLPLVISVARWR 181 Query: 187 PYVNEISLADLWVEPGDALVIPPKRMAPPPTPGMSEEEKRLLVVDMHNNRNSAQACRRYN 246 P EI LADLW+ PGDALV+PPK G E VVDMH NRNSA AC Sbjct: 182 PAAREIYLADLWLRPGDALVLPPKHYPDIAPSGARGIENWPAVVDMHGNRNSALACWFGE 241 Query: 247 GPPGLFTVTVLADPAVMSAPLTRPYYHEEKQPTWH 281 G L T T+LA+ +M++P +P+YHEEK PT H Sbjct: 242 GEDCLLTETILANSTLMNSPQGKPHYHEEKTPTRH 276 >ref|ZP_03545986.1| hypothetical protein CtesDRAFT_PD5220 [Comamonas testosteroni KF-1] gb|EED70272.1| hypothetical protein CtesDRAFT_PD5220 [Comamonas testosteroni KF-1] Length = 272 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 100/260 (38%), Positives = 132/260 (50%), Gaps = 26/260 (10%) Query: 5 QSDFDPVLFIK-DGPSKPLLDPKQYPYMCNDRGVGSQSETPVGEIITLAP--EAPALERG 61 Q FDPVLFIK D P+ ++D Q P+ CN G P + L P P + G Sbjct: 3 QEFFDPVLFIKEDAPT--VVDLSQTPFFCNLHGYPHYCAEPPAGLTVLEPAISNPEVAIG 60 Query: 62 ATYRDIAHWQRTVTPKDWPSY-EITEFDFRVPEVRYEPLPATPENTQAFGATLLRDGQCL 120 YR ++ T P Y T+ F+ + Y+ L ATPE AFG TL+ GQ + Sbjct: 61 NAYRVLS----ATTTHPQPEYGSQTQLVFQAERIEYQALAATPETAAAFGMTLIESGQGI 116 Query: 121 HF--PFDNLVMADYTYGKWAGYESPYLGDGRSRELLTWNATDLEYHYFAHIFFSRGPE-P 177 P +L + DY YG +AG+ SPY G G LL TDLE+H F H+F S P P Sbjct: 117 RITSPQPHLSLVDYEYGMFAGHRSPYEGTGY--RLLGKVCTDLEHHDFPHVFTSIDPHLP 174 Query: 178 LVITVARWRPYVNEISLADLWVEPGDALVIPPKRMAPPPTPGMSEEEKRLLVVDMHNNRN 237 LVI+V ++ P +I LADLW+ G AL +PP+ P PG + +D+H NRN Sbjct: 175 LVISVGKYWPQQQKICLADLWLPRGKALYVPPR----PSLPGQT-------CLDLHGNRN 223 Query: 238 SAQACRRYNGPPGLFTVTVL 257 SA AC R + T T+L Sbjct: 224 SALACWRGIARSSVRTQTLL 243 >ref|ZP_07045352.1| hypothetical protein CTS44_14203 [Comamonas testosteroni S44] gb|EFI61084.1| hypothetical protein CTS44_14203 [Comamonas testosteroni S44] Length = 272 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 127/246 (51%), Gaps = 24/246 (9%) Query: 5 QSDFDPVLFIK-DGPSKPLLDPKQYPYMCNDRGVGSQSETPVGEIITLAPEA--PALERG 61 Q FDPVLFIK D P+ +D Q P+ CN G P + L P A P + G Sbjct: 3 QEFFDPVLFIKEDAPTS--VDLSQTPFFCNIHGFPHYCAEPPTGLTLLEPVASDPKVAIG 60 Query: 62 ATYRDIAHWQRTVTPKDWPSYEITEFDFRVPEVRYEPLPATPENTQAFGATLLRDGQCLH 121 YR ++ T T D T +F+ +V YE L AT + AFG TL+ GQ + Sbjct: 61 NAYRVLS---ATTTRPDPKYGNQTRLEFQADKVEYEALAATHQTAAAFGMTLIAPGQGVR 117 Query: 122 F--PFDNLVMADYTYGKWAGYESPYLGDGRSRELLTWNATDLEYHYFAHIFFSRGPE-PL 178 P +L + DY YG +AG+ SPY G G LL TDLE+H F H+F S P PL Sbjct: 118 ITSPQPHLSLVDYEYGMFAGHRSPYEGTGY--RLLGKVCTDLEHHDFPHVFTSIDPHLPL 175 Query: 179 VITVARWRPYVNEISLADLWVEPGDALVIPPKRMAPPPTPGMSEEEKRLLVVDMHNNRNS 238 VI+V ++ P +I LADLW+ G AL +PP+ P PG + +D+H NRNS Sbjct: 176 VISVGKYWPEQQKICLADLWLPRGMALYVPPR----PNLPGQT-------CLDLHGNRNS 224 Query: 239 AQACRR 244 A AC R Sbjct: 225 ALACWR 230 >ref|YP_003280715.1| hypothetical protein CtCNB1_4673 [Comamonas testosteroni CNB-2] gb|ACY35419.1| hypothetical protein CtCNB1_4673 [Comamonas testosteroni CNB-2] Length = 272 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 126/246 (51%), Gaps = 24/246 (9%) Query: 5 QSDFDPVLFIK-DGPSKPLLDPKQYPYMCNDRGVGSQSETPVGEIITLAPEA--PALERG 61 Q FDPVLFIK D P+ +D Q P+ CN G P + L P A P + G Sbjct: 3 QEFFDPVLFIKEDAPTS--VDLSQTPFFCNIHGFPHYCAEPPTGLTLLEPVASDPKVAIG 60 Query: 62 ATYRDIAHWQRTVTPKDWPSYEITEFDFRVPEVRYEPLPATPENTQAFGATLLRDGQCLH 121 YR ++ T T D T +F+ +V YE + T + AFG TL+ GQ + Sbjct: 61 NAYRVLS---ATTTRPDPKYGNQTRLEFQADQVEYEAIAVTHQTAAAFGMTLIAPGQGVR 117 Query: 122 F--PFDNLVMADYTYGKWAGYESPYLGDGRSRELLTWNATDLEYHYFAHIFFSRGPE-PL 178 P +L + DY YG +AG+ SPY G G LL TDLE+H F H+F S P PL Sbjct: 118 ITSPQPHLSLVDYEYGMFAGHRSPYEGTGY--RLLGKVCTDLEHHDFPHVFTSIDPHLPL 175 Query: 179 VITVARWRPYVNEISLADLWVEPGDALVIPPKRMAPPPTPGMSEEEKRLLVVDMHNNRNS 238 VI+V ++ P +I LADLW+ G AL +PP+ P PG + +D+H NRNS Sbjct: 176 VISVGKYWPEQQKICLADLWLPRGMALYVPPR----PNLPGQT-------CLDLHGNRNS 224 Query: 239 AQACRR 244 A AC R Sbjct: 225 ALACWR 230 >ref|ZP_06062268.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gb|EEY97655.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 272 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 71/187 (37%), Positives = 95/187 (50%), Gaps = 22/187 (11%) Query: 83 EITEFDFRVPEVRYEPLPATPENTQAFGATLLRDGQCLHFPF--DNLVMADYTYGKWAGY 140 E T+ F + PL ATPE AFG TL++ GQ + L +Y YG AG+ Sbjct: 68 EQTQLAFAGNSFEFMPLKATPETAAAFGMTLVKAGQAIEVQATRKKLSQIEYQYGMLAGH 127 Query: 141 ESPYLG---DGRSRELLTWNATDLEYHYFAHIFFSRGPE--PLVITVARWRPYVNEISLA 195 PY + ++ L + TDLE+H F+H+F S P PLVI+ R+ P +I LA Sbjct: 128 FFPYDPTQINLVAKTLYPFVVTDLEHHDFSHVFASTDPNKLPLVISAGRYFPKDRKIYLA 187 Query: 196 DLWVEPGDALVIP--PKRMAPPPTPGMSEEEKRLLVVDMHNNRNSAQACRRYNGPPGLFT 253 DLWVE GDAL IP PK++AP +D+HNNRN+A AC + Sbjct: 188 DLWVEHGDALYIPEMPKQVAPE-------------FIDLHNNRNAALACWKGESNQSTIY 234 Query: 254 VTVLADP 260 + L DP Sbjct: 235 MHTLLDP 241