BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1168.p (281 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774794.1| transcription regulator protein [Herbaspiril... 323 2e-86 ref|ZP_02886746.1| GntR domain protein [Burkholderia graminis C4... 319 2e-85 ref|YP_546960.1| transcriptional regulator NanR [Polaromonas sp.... 283 3e-74 ref|YP_004688596.1| transcriptional regulator NanR [Cupriavidus ... 268 8e-70 ref|YP_003695556.1| GntR family transcriptional regulator [Stark... 204 1e-50 >ref|YP_003774794.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62886.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 198/235 (84%), Positives = 211/235 (89%) Query: 47 MPEPIQRRKLYQEVLERLMARIHQGEFPPGSQLPSERDLMDQYGVGRPAVREALQAMERS 106 MPE IQRRKLYQEVLERLM RIHQGEFP GSQLPSERDLM+QYGVGRPAVREALQAMERS Sbjct: 1 MPEQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERS 60 Query: 107 GFVEIAHGERARVLDLTARSLIAQIAGGAQHLLRTKPDMLGHLKEARVLLETHTARLAAE 166 GFVEIAHGERARV+D TA LIAQIA GAQHLLRTKPDML HLKEARV LET TAR+AA Sbjct: 61 GFVEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAA 120 Query: 167 RATDAQIDRLREIIAAHRASMVNLDQFIERDMAFHREIADISGNPIFPSIVESMFCWAGE 226 RAT QI+RLR+ + HRASMV+L +FIERDMAFHREIADISGNPIFPSIVES+F WA E Sbjct: 121 RATPEQIERLRQTVTVHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASE 180 Query: 227 FYTNLVRAPGAEELTLAEHQRIVDAIAAHDGDAAADAMRAHLMRANDLYRELGQQ 281 FYT +VRAPGAEELTLAEH RIVDAIAA DGDAAA+AMR HL+RAN+LYR LGQQ Sbjct: 181 FYTPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRLGQQ 235 >ref|ZP_02886746.1| GntR domain protein [Burkholderia graminis C4D1M] gb|EDT07587.1| GntR domain protein [Burkholderia graminis C4D1M] Length = 235 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 177/234 (75%), Positives = 199/234 (85%) Query: 47 MPEPIQRRKLYQEVLERLMARIHQGEFPPGSQLPSERDLMDQYGVGRPAVREALQAMERS 106 M E IQRRKLYQEV++RLM RI GE PG+QLPSER+LM+ YGVGRPA+REALQ +ERS Sbjct: 1 MAEIIQRRKLYQEVVDRLMERIRSGEIAPGAQLPSERELMEIYGVGRPAIREALQTLERS 60 Query: 107 GFVEIAHGERARVLDLTARSLIAQIAGGAQHLLRTKPDMLGHLKEARVLLETHTARLAAE 166 G VEI HGERARV+ TA LIAQIAGGA HLLR+ PDML HLKEARV LET TAR+AAE Sbjct: 61 GIVEIVHGERARVVVPTADRLIAQIAGGAMHLLRSHPDMLAHLKEARVFLETGTARMAAE 120 Query: 167 RATDAQIDRLREIIAAHRASMVNLDQFIERDMAFHREIADISGNPIFPSIVESMFCWAGE 226 RAT+ + RL+ +A HRASMVNL++FIERDMAFHREIA ISGNPIFPSIVES+F WAGE Sbjct: 121 RATEEDVARLQLSVARHRASMVNLEEFIERDMAFHREIALISGNPIFPSIVESLFRWAGE 180 Query: 227 FYTNLVRAPGAEELTLAEHQRIVDAIAAHDGDAAADAMRAHLMRANDLYRELGQ 280 +Y LVRAPGAEELTL+EHQRIVDAIA HDGD AA+AMRAHL RAN+LYR L + Sbjct: 181 YYRPLVRAPGAEELTLSEHQRIVDAIAKHDGDGAAEAMRAHLNRANELYRTLSR 234 >ref|YP_546960.1| transcriptional regulator NanR [Polaromonas sp. JS666] gb|ABE42062.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length = 237 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 157/230 (68%), Positives = 187/230 (81%) Query: 49 EPIQRRKLYQEVLERLMARIHQGEFPPGSQLPSERDLMDQYGVGRPAVREALQAMERSGF 108 E IQRRKLYQEVL+RL+ RI GE PPG+ LPSER+LM+ YGVGRPAVREALQA+ERSG Sbjct: 4 EQIQRRKLYQEVLDRLLERIRSGEIPPGAHLPSERELMEFYGVGRPAVREALQALERSGI 63 Query: 109 VEIAHGERARVLDLTARSLIAQIAGGAQHLLRTKPDMLGHLKEARVLLETHTARLAAERA 168 VEI HGERARV+ TA LI Q+AGGA+HLL ++PDML HLK+ARV LE AR+AAERA Sbjct: 64 VEITHGERARVVIPTAGRLIEQLAGGARHLLHSQPDMLEHLKDARVFLEVGMARVAAERA 123 Query: 169 TDAQIDRLREIIAAHRASMVNLDQFIERDMAFHREIADISGNPIFPSIVESMFCWAGEFY 228 TD I RLR+ +A HRAS+ +D+FI+ DMAFHREIA ISGNPIFP+I+E++F WA E+Y Sbjct: 124 TDEDIARLRQRLAEHRASVGKVDEFIQLDMAFHREIARISGNPIFPAILEALFGWAIEYY 183 Query: 229 TNLVRAPGAEELTLAEHQRIVDAIAAHDGDAAADAMRAHLMRANDLYREL 278 VRAPGAE+LTLAEH R+V+AIA D AA A+R HL RAN+LYR+L Sbjct: 184 HPFVRAPGAEQLTLAEHARLVEAIATRDPQAAEAAIREHLTRANELYRQL 233 >ref|YP_004688596.1| transcriptional regulator NanR [Cupriavidus necator N-1] gb|AEI82558.1| transcriptional regulator NanR [Cupriavidus necator N-1] Length = 264 Score = 268 bits (684), Expect = 8e-70, Method: Composition-based stats. Identities = 146/243 (60%), Positives = 181/243 (74%) Query: 36 SNETYKRDSAAMPEPIQRRKLYQEVLERLMARIHQGEFPPGSQLPSERDLMDQYGVGRPA 95 S++ R + EPIQRR+L+++VL+RL RI GE PG QLP+ERDLM+ YGVGRPA Sbjct: 14 SDDIKIRRTMPTSEPIQRRRLFEDVLDRLTERIRNGEIAPGEQLPAERDLMEYYGVGRPA 73 Query: 96 VREALQAMERSGFVEIAHGERARVLDLTARSLIAQIAGGAQHLLRTKPDMLGHLKEARVL 155 +REALQA+ER+G +EIAHGERARV+ T + LI QI GAQHLLR+ PD L HLK ARV Sbjct: 74 IREALQALERAGIIEIAHGERARVVIPTPQRLIQQIGAGAQHLLRSDPDSLEHLKGARVF 133 Query: 156 LETHTARLAAERATDAQIDRLREIIAAHRASMVNLDQFIERDMAFHREIADISGNPIFPS 215 LE A+LAA AT I RL+ + R + + F+ RDMAFH E+A ISGNPIFP+ Sbjct: 134 LECGMAQLAAANATPDDIQRLQARLEEQRQAKDDSALFLTRDMAFHCELARISGNPIFPA 193 Query: 216 IVESMFCWAGEFYTNLVRAPGAEELTLAEHQRIVDAIAAHDGDAAADAMRAHLMRANDLY 275 IV+++F WA E+Y +VRAPGAE LTLAEHQR++DA+A+HDGDAA+ AMR HL RAN LY Sbjct: 194 IVQALFEWAREYYRGIVRAPGAEALTLAEHQRVIDAVASHDGDAASRAMREHLTRANALY 253 Query: 276 REL 278 R L Sbjct: 254 RTL 256 >ref|YP_003695556.1| GntR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH90937.1| GntR domain protein [Starkeya novella DSM 506] Length = 236 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 115/235 (48%), Positives = 148/235 (62%) Query: 45 AAMPEPIQRRKLYQEVLERLMARIHQGEFPPGSQLPSERDLMDQYGVGRPAVREALQAME 104 A + + I RRKL EV +RL I GE PG +PSERDLM+++GVGRPA+REA+QA+ Sbjct: 2 ADVSDTIVRRKLSHEVFDRLKTLITSGELGPGDAMPSERDLMERFGVGRPAIREAMQALA 61 Query: 105 RSGFVEIAHGERARVLDLTARSLIAQIAGGAQHLLRTKPDMLGHLKEARVLLETHTARLA 164 G + I HGERARV L+ARSL Q+ AQ LL PD L HLK+AR E AR A Sbjct: 62 NIGLITITHGERARVQQLSARSLFQQVDLSAQILLSASPDSLEHLKQARRFFERGMAREA 121 Query: 165 AERATDAQIDRLREIIAAHRASMVNLDQFIERDMAFHREIADISGNPIFPSIVESMFCWA 224 A+RAT I RLR+I+ ++ QFI DM FH +IA ISGNPIF ++ ESM W Sbjct: 122 AQRATAEDIKRLRDILDQQAKAVNEPKQFIGLDMRFHTQIAAISGNPIFEAVSESMLSWL 181 Query: 225 GEFYTNLVRAPGAEELTLAEHQRIVDAIAAHDGDAAADAMRAHLMRANDLYRELG 279 ++YT ++ G E +TL EH++I+D IA HD D A M HL R++ L+ G Sbjct: 182 RQYYTEMLTWSGRENVTLVEHEQIIDHIANHDPDGAEAIMVKHLDRSSALFTRQG 236