BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1167.p (316 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774793.1| LysR family transcription regulator protein ... 487 e-135 ref|YP_001888319.1| LysR family transcriptional regulator [Burkh... 378 e-103 ref|YP_003607868.1| LysR family transcriptional regulator [Burkh... 375 e-102 ref|ZP_02887338.1| transcriptional regulator, LysR family [Burkh... 374 e-102 ref|YP_003910523.1| LysR family transcriptional regulator [Burkh... 374 e-102 >ref|YP_003774793.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62885.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 273/313 (87%), Positives = 294/313 (93%) Query: 1 MKPAPSQQSLNSLLSRLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLD 60 M AP QSLNSLLSRLRMKQLQLLIALD+H+SLHKASSALAMTQSAASKSLAELESMLD Sbjct: 8 MSSAPRPQSLNSLLSRLRMKQLQLLIALDEHKSLHKASSALAMTQSAASKSLAELESMLD 67 Query: 61 AQLFERTRSGLIPNQFGHCVIRYARLMATDLGSLCEEMAQIRSGRGGRLAIGAVMGALPE 120 AQLFERT+SGLI N FGHCVIRYARLMATDLGSLCEEMAQIRSG+GGRLAIGAVMGA+P Sbjct: 68 AQLFERTKSGLIANPFGHCVIRYARLMATDLGSLCEEMAQIRSGQGGRLAIGAVMGAVPA 127 Query: 121 LVVPAVDALQRRHPELSIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSE 180 L+VPAVDALQRRHP LSI+IVE+TS+ +L LDEGHLDLLVARASVS +PGKYHYQ LSE Sbjct: 128 LIVPAVDALQRRHPALSIEIVEDTSLHMLDLLDEGHLDLLVARASVSAHPGKYHYQSLSE 187 Query: 181 EPLSVVVSGEHPRPRGRQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAIST 240 EPLSVVVS EHPRPRG+++ LAALAGYRW+TYPSHMPLHAVLEREMDLAG+SMP N I+T Sbjct: 188 EPLSVVVSAEHPRPRGKELQLAALAGYRWITYPSHMPLHAVLEREMDLAGLSMPANTIAT 247 Query: 241 ASTFVTVALLQQGTDMVSILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSM 300 ASTFVTVALLQQG DMVSILPTAVAEMFV+RGMLRILPVKLRSMSQTIGIVTRKGGQLS Sbjct: 248 ASTFVTVALLQQGADMVSILPTAVAEMFVQRGMLRILPVKLRSMSQTIGIVTRKGGQLSG 307 Query: 301 AGQAFVRLLQEGI 313 AGQAFV+LL+EG+ Sbjct: 308 AGQAFVQLLREGL 320 >ref|YP_001888319.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD18949.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 327 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 199/303 (65%), Positives = 253/303 (83%) Query: 7 QQSLNSLLSRLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFER 66 + +LN LLS+LRMKQLQLLIALDD +SLHKA+ A++MTQSAASK+L ELESML+A LFER Sbjct: 2 KDTLNVLLSKLRMKQLQLLIALDDLKSLHKAAGAMSMTQSAASKALQELESMLEAPLFER 61 Query: 67 TRSGLIPNQFGHCVIRYARLMATDLGSLCEEMAQIRSGRGGRLAIGAVMGALPELVVPAV 126 ++SG+IPNQ GHCVIRYARLM TDL +LC+++A+IRSGRGGRLAIGA+MGA+PE VVPA+ Sbjct: 62 SKSGMIPNQLGHCVIRYARLMTTDLTALCQDVAEIRSGRGGRLAIGAIMGAIPECVVPAL 121 Query: 127 DALQRRHPELSIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVV 186 + L P LS+++VE+TS ++L +LD+G LDL++ RA+V+ +P KYHY+PL +EPLSVV Sbjct: 122 NQLHAAQPGLSVEVVEDTSARMLRQLDDGRLDLVIGRATVAADPSKYHYRPLGDEPLSVV 181 Query: 187 VSGEHPRPRGRQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAISTASTFVT 246 V HP +++ L LAG+RWV YPSHMPLHA+LEREMDLAG+ MP N +STASTFVT Sbjct: 182 VGYGHPPLPKKEVKLRDLAGHRWVMYPSHMPLHALLEREMDLAGLQMPDNPVSTASTFVT 241 Query: 247 VALLQQGTDMVSILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSMAGQAFV 306 VALLQ D+VS+LPTA+A +FV++ MLR++PVKL+S SQT GIVTRKGG LS + F+ Sbjct: 242 VALLQSSHDLVSLLPTAIAALFVRQKMLRLVPVKLKSPSQTFGIVTRKGGVLSPPAEQFI 301 Query: 307 RLL 309 LL Sbjct: 302 ELL 304 >ref|YP_003607868.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG18357.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 312 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 195/304 (64%), Positives = 256/304 (84%) Query: 7 QQSLNSLLSRLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFER 66 + +LN LLS+LRMKQLQLLIALDDH+SLHKA+ ++MTQSAASK+L ELESMLDA LFER Sbjct: 2 KDTLNVLLSKLRMKQLQLLIALDDHKSLHKAAGVMSMTQSAASKALQELESMLDAPLFER 61 Query: 67 TRSGLIPNQFGHCVIRYARLMATDLGSLCEEMAQIRSGRGGRLAIGAVMGALPELVVPAV 126 ++SG+IPNQ GHCVIRYAR++ +DL +LC+++A+IRSGRGGRLA+GA+MGA+P+ VVPA+ Sbjct: 62 SKSGMIPNQLGHCVIRYARVVTSDLTALCQDVAEIRSGRGGRLALGAIMGAIPDCVVPAL 121 Query: 127 DALQRRHPELSIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVV 186 + L P LSI++VE+TS ++L++LD+G LDL+V RA+V+ +P KY Y+PL +EPL+VV Sbjct: 122 NQLHAAQPGLSIEVVEDTSARMLAQLDDGRLDLVVGRAAVAADPSKYQYRPLGDEPLAVV 181 Query: 187 VSGEHPRPRGRQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAISTASTFVT 246 V +H R+M+L+ LAG+RWVTYPSHMPLHA+LEREMDLAG+ MP N ISTASTFVT Sbjct: 182 VGYQHAPLLRREMTLSDLAGHRWVTYPSHMPLHALLEREMDLAGLDMPDNPISTASTFVT 241 Query: 247 VALLQQGTDMVSILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSMAGQAFV 306 VALLQ +++S+LP+A+AE FV+ MLR++PV+L+S SQT GIVTRKGG LS + F+ Sbjct: 242 VALLQSSAELISLLPSAIAEPFVRHKMLRVVPVRLKSPSQTFGIVTRKGGVLSPPAERFI 301 Query: 307 RLLQ 310 LL+ Sbjct: 302 ALLR 305 >ref|ZP_02887338.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gb|EDT07044.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 332 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 195/305 (63%), Positives = 254/305 (83%) Query: 7 QQSLNSLLSRLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFER 66 + +LN LL +LRMKQLQLLIALD +SLHKA+ ++MTQSAASK+L ELESM +A LFER Sbjct: 2 KNTLNVLLGKLRMKQLQLLIALDHQKSLHKAAGLMSMTQSAASKALQELESMFEAPLFER 61 Query: 67 TRSGLIPNQFGHCVIRYARLMATDLGSLCEEMAQIRSGRGGRLAIGAVMGALPELVVPAV 126 ++SG+IPNQ GHCVIR+ARL+ATDL +LC+++A+IRSGRGGRLAIGA+MGA+P+ V+PAV Sbjct: 62 SKSGMIPNQLGHCVIRHARLVATDLTALCQDVAEIRSGRGGRLAIGAIMGAIPQCVIPAV 121 Query: 127 DALQRRHPELSIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVV 186 + L HP LSI++VE+TS ++L++LD+G LDL++ RA+V+ +P KY Y+PL++EPLSVV Sbjct: 122 NRLHAGHPNLSIEVVEDTSARMLAQLDDGRLDLMIGRAAVAADPSKYQYRPLADEPLSVV 181 Query: 187 VSGEHPRPRGRQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAISTASTFVT 246 V HP +++ L LA +RWV YPSHMPLHA+LEREMDLAG++MP N ISTASTFVT Sbjct: 182 VGYGHPPLPRKEVKLGDLADHRWVMYPSHMPLHALLEREMDLAGLTMPDNPISTASTFVT 241 Query: 247 VALLQQGTDMVSILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSMAGQAFV 306 VALLQ D+VS+LPTA+AEMF+++ MLR +PVKL+S SQT G+VTRKGG LS + FV Sbjct: 242 VALLQSRADLVSLLPTAIAEMFIRQKMLRAVPVKLKSPSQTFGVVTRKGGVLSPPAERFV 301 Query: 307 RLLQE 311 LL++ Sbjct: 302 ELLRQ 306 >ref|YP_003910523.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN61232.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 337 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 195/305 (63%), Positives = 256/305 (83%) Query: 7 QQSLNSLLSRLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFER 66 + +LN LL +LRMKQLQLLIALDD +SLHKA+ ++MTQSAASK+L ELESM +A LFER Sbjct: 2 KNTLNVLLGKLRMKQLQLLIALDDQKSLHKAAGLMSMTQSAASKALQELESMFEAPLFER 61 Query: 67 TRSGLIPNQFGHCVIRYARLMATDLGSLCEEMAQIRSGRGGRLAIGAVMGALPELVVPAV 126 ++SG+IPNQ GHCVIR+ARL+ATDL +LC+++A+IRSGRGGRLAIGA+MGA+ + V+PAV Sbjct: 62 SKSGMIPNQLGHCVIRHARLVATDLTALCQDVAEIRSGRGGRLAIGAIMGAIAQCVIPAV 121 Query: 127 DALQRRHPELSIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVV 186 + L +P+LSI++VE+TS ++L++LD+G LDL++ RA+V+ +P KY Y+PL++EPLSVV Sbjct: 122 NRLHAGYPKLSIEVVEDTSARMLAQLDDGRLDLVIGRAAVAADPSKYQYRPLADEPLSVV 181 Query: 187 VSGEHPRPRGRQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAISTASTFVT 246 V HP ++++LA LA +RWV YPSHMPLHA+LEREMDLAG++MP N ISTASTFVT Sbjct: 182 VGYAHPPWPKKELTLADLADHRWVMYPSHMPLHALLEREMDLAGLAMPDNRISTASTFVT 241 Query: 247 VALLQQGTDMVSILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSMAGQAFV 306 VALLQ D VS+LPTA+AEMF+++ MLR +PVKL+S SQT G+VTRKGG LS + FV Sbjct: 242 VALLQSSADFVSLLPTAIAEMFIRQKMLRAVPVKLKSPSQTFGVVTRKGGVLSPPAERFV 301 Query: 307 RLLQE 311 LL++ Sbjct: 302 ELLRQ 306