BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1166.p (316 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774792.1| dihydrodipicolinate synthase/N-acetylneurami... 565 e-159 ref|YP_001796657.1| dihydrodipicolinate synthase [Cupriavidus ta... 479 e-133 ref|YP_001888318.1| dihydrodipicolinate synthetase [Burkholderia... 471 e-131 ref|YP_004230568.1| dihydrodipicolinate synthetase [Burkholderia... 468 e-130 ref|YP_003910522.1| dihydrodipicolinate synthetase [Burkholderia... 465 e-129 >ref|YP_003774792.1| dihydrodipicolinate synthase/N-acetylneuraminate lyase [Herbaspirillum seropedicae SmR1] gb|ADJ62884.1| dihydrodipicolinate synthase/N-acetylneuraminate lyase protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 565 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 285/306 (93%), Positives = 296/306 (96%) Query: 11 MSTPIYRGVFPVAPTIFDENGKLDLEGQKRAIDFMIDAGSNGICILANFSEQFVLSDEER 70 MSTP+YRGVFPVAPTIFD NGKLDLEGQKRAIDFMIDAGSNG+CILANFSEQFVLSDEER Sbjct: 1 MSTPLYRGVFPVAPTIFDANGKLDLEGQKRAIDFMIDAGSNGLCILANFSEQFVLSDEER 60 Query: 71 VLVQDTVLKHVAGRIPVIVTTTHFGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVSEK 130 V VQ+TVL+HVAGR+PVIVTTTH+GSQICAERSRAAQDAGAAMVMVMPPYHGATFRV EK Sbjct: 61 VQVQNTVLEHVAGRVPVIVTTTHYGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVPEK 120 Query: 131 QIYEFYGRVSDAIDIPIMIQDAPVAGTPLSAPFLARMAKEIANVSYFKIETAGAASKLRE 190 QIYEFY VSDAIDIPIMIQDAPVAGTPLSAPFLARMAKEI VSYFKIETAGAASKLR+ Sbjct: 121 QIYEFYKHVSDAIDIPIMIQDAPVAGTPLSAPFLARMAKEIEQVSYFKIETAGAASKLRD 180 Query: 191 LIELGGDAVVGPWDGEEAITLIPDLDGGATGAMTGGGYPDGIRKIVDAYFAGDTEKAAEL 250 LIELGGDAVVGPWDGEEAITLIPDLD GATGAMTGGGYPDGIRKIVDAYFAGD EKAAEL Sbjct: 181 LIELGGDAVVGPWDGEEAITLIPDLDAGATGAMTGGGYPDGIRKIVDAYFAGDIEKAAEL 240 Query: 251 YMQWLPLINYENRQCGLAACKALMLEGGVIKSDMLRHPQAPMHPKVREGLLRVARRLDPM 310 YMQWLPLINYENRQCGL+ACKALMLEGGVIKSDMLRHPQ P+HPKVREGLLRVARRLDP+ Sbjct: 241 YMQWLPLINYENRQCGLSACKALMLEGGVIKSDMLRHPQPPLHPKVREGLLRVARRLDPL 300 Query: 311 VLSWGK 316 VLSWG+ Sbjct: 301 VLSWGR 306 >ref|YP_001796657.1| dihydrodipicolinate synthase [Cupriavidus taiwanensis LMG 19424] emb|CAP63420.1| putative Dihydrodipicolinate synthase [Cupriavidus taiwanensis LMG 19424] Length = 310 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 232/307 (75%), Positives = 264/307 (85%) Query: 10 SMSTPIYRGVFPVAPTIFDENGKLDLEGQKRAIDFMIDAGSNGICILANFSEQFVLSDEE 69 S + +YRGVFPVAPTIFD G LDL+GQ+R IDFMIDAGS+G+CILANFSEQFVLSD+E Sbjct: 4 SPTPTVYRGVFPVAPTIFDAQGGLDLDGQRRCIDFMIDAGSHGLCILANFSEQFVLSDDE 63 Query: 70 RVLVQDTVLKHVAGRIPVIVTTTHFGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVSE 129 R ++ TVL+HV GR+PVIVTTTHF S++CAERSRAAQDAGAAMVMVMPPYHGAT R+ E Sbjct: 64 RNVLMKTVLEHVDGRVPVIVTTTHFSSRLCAERSRAAQDAGAAMVMVMPPYHGATIRMPE 123 Query: 130 KQIYEFYGRVSDAIDIPIMIQDAPVAGTPLSAPFLARMAKEIANVSYFKIETAGAASKLR 189 + I+EF+ VSDAIDIPIMIQDAPV+GT LSAPFLARMA+EI NVSYFKIE AA+KLR Sbjct: 124 RSIHEFFATVSDAIDIPIMIQDAPVSGTTLSAPFLARMAREIGNVSYFKIEVPQAAAKLR 183 Query: 190 ELIELGGDAVVGPWDGEEAITLIPDLDGGATGAMTGGGYPDGIRKIVDAYFAGDTEKAAE 249 ELIELGGDA+VGPWDGEEAITL+ DL+ GATGAMTG G+PDGIR+I+DA+ AGD E AA+ Sbjct: 184 ELIELGGDAIVGPWDGEEAITLMADLEAGATGAMTGAGFPDGIRQILDAWQAGDAELAAQ 243 Query: 250 LYMQWLPLINYENRQCGLAACKALMLEGGVIKSDMLRHPQAPMHPKVREGLLRVARRLDP 309 Y QWLPLINYENRQ LA K LM EGGVI SD +RHP PMHP REGLLR+ARRLDP Sbjct: 244 RYQQWLPLINYENRQGWLATSKVLMQEGGVIASDAVRHPLQPMHPATREGLLRIARRLDP 303 Query: 310 MVLSWGK 316 +VL WG+ Sbjct: 304 LVLRWGR 310 >ref|YP_001888318.1| dihydrodipicolinate synthetase [Burkholderia phytofirmans PsJN] gb|ACD18948.1| dihydrodipicolinate synthetase [Burkholderia phytofirmans PsJN] Length = 310 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 238/300 (79%), Positives = 260/300 (86%) Query: 17 RGVFPVAPTIFDENGKLDLEGQKRAIDFMIDAGSNGICILANFSEQFVLSDEERVLVQDT 76 RGVFPVAPTIFD+ G+LDLEGQKR IDFMIDAGSNG+CILANFSEQF LSD+ER + Sbjct: 11 RGVFPVAPTIFDDAGRLDLEGQKRCIDFMIDAGSNGLCILANFSEQFALSDDERNTLMHV 70 Query: 77 VLKHVAGRIPVIVTTTHFGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVSEKQIYEFY 136 VL+HVAGR+PVIVTTTHF S CAERSR+AQ AGAAMVMVMPPYHGAT R+ E+ IYEFY Sbjct: 71 VLEHVAGRVPVIVTTTHFSSYQCAERSRSAQAAGAAMVMVMPPYHGATIRIGERGIYEFY 130 Query: 137 GRVSDAIDIPIMIQDAPVAGTPLSAPFLARMAKEIANVSYFKIETAGAASKLRELIELGG 196 VSDAI IPIMIQDAPV+GTPLSAPFLARMA+EI NVSYFKIE AA+KLRELIELGG Sbjct: 131 RTVSDAIGIPIMIQDAPVSGTPLSAPFLARMAREIDNVSYFKIEVPQAANKLRELIELGG 190 Query: 197 DAVVGPWDGEEAITLIPDLDGGATGAMTGGGYPDGIRKIVDAYFAGDTEKAAELYMQWLP 256 DA+VGPWDGEEAITL+ DLD GATG+MTGGGY DGIR IVDAY AGDTE AA Y QWLP Sbjct: 191 DAIVGPWDGEEAITLMADLDAGATGSMTGGGYADGIRLIVDAYAAGDTEAAAAHYQQWLP 250 Query: 257 LINYENRQCGLAACKALMLEGGVIKSDMLRHPQAPMHPKVREGLLRVARRLDPMVLSWGK 316 LINYENRQ GLA+CKALM EGGVI+SD +RHP MHP REGLL+VARRLDP+VL WG+ Sbjct: 251 LINYENRQGGLASCKALMKEGGVIRSDAVRHPLPQMHPATREGLLKVARRLDPLVLRWGR 310 >ref|YP_004230568.1| dihydrodipicolinate synthetase [Burkholderia sp. CCGE1001] gb|ADX57508.1| dihydrodipicolinate synthetase [Burkholderia sp. CCGE1001] Length = 310 Score = 468 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 233/300 (77%), Positives = 261/300 (87%) Query: 17 RGVFPVAPTIFDENGKLDLEGQKRAIDFMIDAGSNGICILANFSEQFVLSDEERVLVQDT 76 RGVFPVAPTIFDE+G+LDLEGQKR IDFMIDAGSNG+CILANFSEQF LSD+ER + Sbjct: 11 RGVFPVAPTIFDESGQLDLEGQKRCIDFMIDAGSNGLCILANFSEQFALSDDERNTLMHV 70 Query: 77 VLKHVAGRIPVIVTTTHFGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVSEKQIYEFY 136 VL+HVAGR+PVIVTTTHF S CA+RSR AQ+AGAAMVM+MPPYHGAT R+ E+ I EFY Sbjct: 71 VLEHVAGRVPVIVTTTHFSSHQCAQRSRRAQEAGAAMVMIMPPYHGATIRIGERGIEEFY 130 Query: 137 GRVSDAIDIPIMIQDAPVAGTPLSAPFLARMAKEIANVSYFKIETAGAASKLRELIELGG 196 VSDAIDIPIMIQDAPV+GTPLSAPFLARMA+EI +VSYFKIE AA+KLRELI+LGG Sbjct: 131 RTVSDAIDIPIMIQDAPVSGTPLSAPFLARMAREIEHVSYFKIEVPQAANKLRELIQLGG 190 Query: 197 DAVVGPWDGEEAITLIPDLDGGATGAMTGGGYPDGIRKIVDAYFAGDTEKAAELYMQWLP 256 +A+VGPWDGEEAITL+ DLD GATG+MTGGGY DGIR IVDAY AGDTE AA Y QWLP Sbjct: 191 EAIVGPWDGEEAITLMADLDAGATGSMTGGGYADGIRLIVDAYAAGDTEAAAAHYQQWLP 250 Query: 257 LINYENRQCGLAACKALMLEGGVIKSDMLRHPQAPMHPKVREGLLRVARRLDPMVLSWGK 316 LINYENRQ GLA+CKALM EGGVI+SD +RHP MHP REGLL++ARRLDP+VL WG+ Sbjct: 251 LINYENRQGGLASCKALMKEGGVIRSDAVRHPLPAMHPATREGLLKIARRLDPLVLRWGR 310 >ref|YP_003910522.1| dihydrodipicolinate synthetase [Burkholderia sp. CCGE1003] gb|ADN61231.1| dihydrodipicolinate synthetase [Burkholderia sp. CCGE1003] Length = 310 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 236/300 (78%), Positives = 257/300 (85%) Query: 17 RGVFPVAPTIFDENGKLDLEGQKRAIDFMIDAGSNGICILANFSEQFVLSDEERVLVQDT 76 RGVFPVAPTIFDE G+LDLEGQKR IDFMIDAGSNG+CILANFSEQF LSDEER + Sbjct: 11 RGVFPVAPTIFDEAGQLDLEGQKRCIDFMIDAGSNGLCILANFSEQFALSDEERNTLMHV 70 Query: 77 VLKHVAGRIPVIVTTTHFGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVSEKQIYEFY 136 VL HVAGR+PVIVTTTHF S CAERSR AQ+AGAAMVM+MPPYHGAT R+ E+ I EFY Sbjct: 71 VLDHVAGRVPVIVTTTHFSSYQCAERSRRAQEAGAAMVMIMPPYHGATIRIGERGIEEFY 130 Query: 137 GRVSDAIDIPIMIQDAPVAGTPLSAPFLARMAKEIANVSYFKIETAGAASKLRELIELGG 196 VSDAIDIPIMIQDAPV+GTPLSAPFLARMA+EI VSYFKIE AA+KLRELI+LGG Sbjct: 131 RTVSDAIDIPIMIQDAPVSGTPLSAPFLARMAREIERVSYFKIEVPQAANKLRELIQLGG 190 Query: 197 DAVVGPWDGEEAITLIPDLDGGATGAMTGGGYPDGIRKIVDAYFAGDTEKAAELYMQWLP 256 DA+VGPWDGEEAITL+ DLD GATG+MTGGGY DGIR IVDAY AGDTE AA Y QWLP Sbjct: 191 DAIVGPWDGEEAITLMADLDAGATGSMTGGGYADGIRLIVDAYAAGDTEAAAAHYQQWLP 250 Query: 257 LINYENRQCGLAACKALMLEGGVIKSDMLRHPQAPMHPKVREGLLRVARRLDPMVLSWGK 316 LINYENRQ GLA+CKALM EGGVI+SD +RHP M P REGLL++ARRLDP+VL WGK Sbjct: 251 LINYENRQGGLASCKALMKEGGVIRSDAVRHPLPAMPPATREGLLKIARRLDPLVLRWGK 310