BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1164.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774791.1| two component response regulator protein [He... 224 9e-57 ref|YP_001354511.1| two-components system response regulator [Ja... 135 6e-30 ref|YP_372321.1| two component transcriptional regulator [Burkho... 107 1e-21 ref|YP_002795136.1| Two component transcriptional regulator, win... 99 7e-19 ref|ZP_06690116.1| conserved hypothetical protein [Achromobacter... 89 3e-16 >ref|YP_003774791.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62883.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 224 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 115/223 (51%), Positives = 152/223 (68%) Query: 8 MATILLVEDILRHDRNACLARFLEDQGHKVSRVMADGEELLAPLQDGDIAIIHVGRASAA 67 M + LVE R NA L +L GH + M G L+ P + GDIAI+ +GRA+ Sbjct: 1 MVAVFLVESASRRQCNAPLREYLRAYGHTLISSMEKGGGLMMPARAGDIAIVDMGRAAGP 60 Query: 68 GYALTQRLRSSNARMGILLLASEHESVTLRIAGLERGADFCEPLPQRLELLNAYIETMLR 127 + +RLR+ NAR+GILL+A+ E + RI GL GADFCEP+P RL++L YI +LR Sbjct: 61 ACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVRLDILMTYINVILR 120 Query: 128 RVVPQAWQLDVAARTLRAPHHDAVEINSREVALLKALASSTRHAADRCAIAHAFGVEWVS 187 R+VP WQLD+ ARTLR P +DA+++N +E+ALL+ LA+++ H A R IA FG +V Sbjct: 121 RLVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAANSHHLASRSDIAGVFGKPYVD 180 Query: 188 FDERVLEKTVSRLRRKWRDSTMYDLPLRTLHGVGYCFTEAIQA 230 FDER+LEK VSRLRRKWR+S + LPL+TLHG GY F+E IQA Sbjct: 181 FDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSEPIQA 223 >ref|YP_001354511.1| two-components system response regulator [Janthinobacterium sp. Marseille] gb|ABR90123.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 220 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 126/223 (56%), Gaps = 6/223 (2%) Query: 8 MATILLVEDILRHDRNACLARFLEDQGHKVSRVMADGEELLAPLQDG-DIAIIHVGRASA 66 MA +LL+ED + D +A FL +GH+V + E PL D DIA+I VG A Sbjct: 1 MAKLLLLEDEV--DYRQEIADFLRSEGHQVLEAGSAAE--FTPLMDEMDIALIDVGLPDA 56 Query: 67 AGYALTQRLRSSNARMGILLLASEHESVTLRIAGLERGADFCEPLPQRLELLNAYIETML 126 G+ L LR + GI++L ++ + +IA L GAD P R + L A+I+ + Sbjct: 57 DGFELAALLRKHRNKCGIIMLTAQG-GINHKIASLRGGADHYLVKPVRYDELLAHIKALE 115 Query: 127 RRVVPQAWQLDVAARTLRAPHHDAVEINSREVALLKALASSTRHAADRCAIAHAFGVEWV 186 RR+ W+LD R L AP+ A ++ E+ L + LA+ + A R IA+AFG +W+ Sbjct: 116 RRMGLGGWRLDTLERKLYAPNGHAEALSDHELKLFELLAAQSGQAVSRRTIANAFGADWL 175 Query: 187 SFDERVLEKTVSRLRRKWRDSTMYDLPLRTLHGVGYCFTEAIQ 229 +DER LE+ VSRLRR+WR++ +LP RT HG GY F I+ Sbjct: 176 DYDERRLEQIVSRLRRRWRENCPEELPFRTEHGKGYSFCADIE 218 >ref|YP_372321.1| two component transcriptional regulator [Burkholderia sp. 383] gb|ABB11677.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 219 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 79/217 (36%), Positives = 114/217 (52%), Gaps = 5/217 (2%) Query: 8 MATILLVEDILRHDRNACLARFLEDQGHKVSRVMADGEELLAPLQDGDIAIIHVGRASAA 67 MA +LL++D + +A FLE +G V + E D AII V + Sbjct: 1 MAKVLLLDDEVELREE--IAAFLEKRGWTVDQA-GTVAEFQERASDLAFAIIDVMLPDGS 57 Query: 68 GYALTQRLRSSNARMGILLLASEHESVTLRIAGLERGADFCEPLPQRLELLNAYIETMLR 127 G+ LR+ + GI++L + ++ +I GL GAD P +L L+A ++ + R Sbjct: 58 GFDAAVWLRARHRDCGIVMLTARGDTQD-KIDGLIGGADHYLVKPVKLLELDAILQALGR 116 Query: 128 RVVPQAWQLDVAARTLRAPHHDAVEINSREVALLKALASSTRHAADRCAIAHAFGVEWVS 187 RV W+LD AR L AP +E+++ E+ALL LA A R IA FG +WV Sbjct: 117 RVA-NDWRLDCQARVLSAPVGGRLELSASEIALLALLARHPSKAVSRRQIAEDFGFDWVD 175 Query: 188 FDERVLEKTVSRLRRKWRDSTMYDLPLRTLHGVGYCF 224 +DER LE VSRLR++WR +LPL+T+H GY F Sbjct: 176 YDERRLETMVSRLRQRWRSEAGSELPLKTVHRTGYTF 212 >ref|YP_002795136.1| Two component transcriptional regulator, winged helix family [Laribacter hongkongensis HLHK9] gb|ACO74127.1| Two component transcriptional regulator, winged helix family [Laribacter hongkongensis HLHK9] Length = 183 Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 1/174 (0%) Query: 56 IAIIHVGRASAAGYALTQRLRSSNARMGILLLASEHESVTLRIAGLERGADFCEPLPQRL 115 +AI V +G+ LR +AR GI++L + + + + GL GAD P L Sbjct: 9 MAICDVMLPDGSGFDFVSSLREHSARCGIVMLTARSGTHDI-VTGLHGGADHYLVKPVNL 67 Query: 116 ELLNAYIETMLRRVVPQAWQLDVAARTLRAPHHDAVEINSREVALLKALASSTRHAADRC 175 L+A + + RR + W L+ AA LR+P +E+++ E LL LA++ +A R Sbjct: 68 LQLDATLHALARRALRHCWVLEKAALALRSPDGVILELSTGEWQLLSVLAAARGNAVSRK 127 Query: 176 AIAHAFGVEWVSFDERVLEKTVSRLRRKWRDSTMYDLPLRTLHGVGYCFTEAIQ 229 I A G EW+ FD+R L+ VSRLR++WR ++LPL+T H GY T A++ Sbjct: 128 DIVQAQGHEWLEFDQRRLDTQVSRLRQRWRLVAGHELPLKTAHRSGYVLTVAVE 181 >ref|ZP_06690116.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF73073.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 232 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 116/232 (50%), Gaps = 19/232 (8%) Query: 8 MATILLVED--ILRHDRNACLARFLEDQGHKVSRVMADGEELLAPLQDGD--IAIIHVGR 63 M ++L+ED +LR + L FLE+ G+ R ++ E +AII +G Sbjct: 1 MLDVILLEDEPVLRQE----LGEFLEELGY-APRCVSSLREFDHHFDAARHRLAIIDIGL 55 Query: 64 ASAAGYALTQRLRSSNARMGILLLASEHESVTLRIAGLERGADFCEPLPQRLELLNAYIE 123 G L QRLR ++GI++L++ S RI+GL GAD L+ L A + Sbjct: 56 PDGCGLDLIQRLRQEGQQVGIVVLSARQTSAD-RISGLGIGADHYLGKGCDLDELAAVLS 114 Query: 124 TMLRRV---------VPQAWQLDVAARTLRAPHHDAVEINSREVALLKALASSTRHAADR 174 ++RR+ P AW L+V R L PH V ++ +++ +L+ L S R Sbjct: 115 ALVRRLGLQQAPAQAAPSAWTLEVGPRRLIIPHAPPVSLSHQDLIVLRCLMSQAGENISR 174 Query: 175 CAIAHAFGVEWVSFDERVLEKTVSRLRRKWRDSTMYDLPLRTLHGVGYCFTE 226 I A G +++ +D+R L+ + RLRR+ D++ LP++TL GYCF + Sbjct: 175 RQIIEALGFDFLDYDQRRLDTQMRRLRRRVEDASGQTLPVKTLRSSGYCFYQ 226