BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1162.p (264 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774790.1| AraC family two-component hybrid sensor/regu... 374 e-102 ref|YP_004350683.1| AraC family two-component hybrid sensor/regu... 285 7e-75 gb|EFV85399.1| two component transcriptional regulator [Achromob... 273 1e-71 gb|EGP42967.1| AraC family two-component hybrid sensor/regulator... 268 6e-70 ref|YP_002909870.1| AraC family two component transcriptional re... 238 7e-61 >ref|YP_003774790.1| AraC family two-component hybrid sensor/regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62882.1| AraC family two-component hybrid sensor/regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 262 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 208/264 (78%), Positives = 231/264 (87%), Gaps = 2/264 (0%) Query: 1 MVYKSIHPVYAGPLSGQRILVVDDAEEDRMLLSDFLLRHGARLYVARDGQDGYRKAQTVR 60 M+YK + P+ GPLSGQRILVVDDAE+DR LLS FLLRHG RLY+ DGQDGYRKAQTVR Sbjct: 1 MIYKPLTPLPPGPLSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVR 60 Query: 61 PDLILMDIRMPVYDGLTSARLLKANSCTRNIPLIFLSAAASTEEKVNGLSVGAVDYITKP 120 PDLILMDIRMP YDGLTS RLLKAN+ TRNIP+IFLSAA +TEEKV GLS GAVDYITKP Sbjct: 61 PDLILMDIRMPGYDGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKP 120 Query: 121 FDFEEVRLRLCVHLRSTLHADLPPITQTPTGSATQGGSSTFDMVLFQAARRLMMDKLDQP 180 FDFEEVRLRLC+HLRS ++ P + + G++TFDMVLFQAAR+LM++KLDQ Sbjct: 121 FDFEEVRLRLCIHLRSAARSNAP--SASTESVEIPHGTNTFDMVLFQAARKLMLEKLDQT 178 Query: 181 LGLNALAAAVGTNARRLSSAFKHCAGVTVFDFLREERMKEARRLLSESTLDIGAIALALG 240 L LN LA+AVGTNARRLSSAFK+CAGVTVFDFLREERM+EARRLLSE+TL+IGAIALALG Sbjct: 179 LSLNGLASAVGTNARRLSSAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALG 238 Query: 241 YSNTANFSTAFRERFGMPPSQFRR 264 YSNTANFSTAFRERFGMPPSQFRR Sbjct: 239 YSNTANFSTAFRERFGMPPSQFRR 262 >ref|YP_004350683.1| AraC family two-component hybrid sensor/regulator transcription regulator protein [Burkholderia gladioli BSR3] gb|AEA65171.1| AraC family two-component hybrid sensor/regulator transcription regulator protein [Burkholderia gladioli BSR3] Length = 268 Score = 285 bits (728), Expect = 7e-75, Method: Composition-based stats. Identities = 152/253 (60%), Positives = 182/253 (71%) Query: 12 GPLSGQRILVVDDAEEDRMLLSDFLLRHGARLYVARDGQDGYRKAQTVRPDLILMDIRMP 71 G L G R+L+VDD EDRMLL DFL + R+Y+A DG+DGY KAQ V PDLILMDI MP Sbjct: 10 GHLHGLRVLIVDDNREDRMLLMDFLSQQRCRVYLASDGRDGYGKAQAVLPDLILMDITMP 69 Query: 72 VYDGLTSARLLKANSCTRNIPLIFLSAAASTEEKVNGLSVGAVDYITKPFDFEEVRLRLC 131 V DGLT+ LLKA+ TR IPLIFLSAA E+V GL+ GAVDY+TKPF+FEEVRLRL Sbjct: 70 VCDGLTACHLLKADPATRAIPLIFLSAAGMPHERVAGLAAGAVDYVTKPFNFEEVRLRLG 129 Query: 132 VHLRSTLHADLPPITQTPTGSATQGGSSTFDMVLFQAARRLMMDKLDQPLGLNALAAAVG 191 +HLR L T+ S T GG++T DM LF+AAR+L++ +LD L LA AVG Sbjct: 130 IHLRGKLARQTADETEVDVASGTGGGANTLDMALFRAARKLLLIQLDDTPVLARLARAVG 189 Query: 192 TNARRLSSAFKHCAGVTVFDFLREERMKEARRLLSESTLDIGAIALALGYSNTANFSTAF 251 TNA RL+ AF+ C G+TVFDFLRE RMKEARRLLSE+ LD+ IA +LGY +NFSTAF Sbjct: 190 TNAHRLNLAFRRCVGMTVFDFLREARMKEARRLLSETALDVQTIASSLGYGTRSNFSTAF 249 Query: 252 RERFGMPPSQFRR 264 R+ FG P R+ Sbjct: 250 RKHFGFAPRALRQ 262 >gb|EFV85399.1| two component transcriptional regulator [Achromobacter xylosoxidans C54] Length = 273 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 158/260 (60%), Positives = 191/260 (73%), Gaps = 3/260 (1%) Query: 7 HPVYAGPLSGQRILVVDDAEEDRMLLSDFLLRHGARLYVARDGQDGYRKAQTVRPDLILM 66 +P+ G L+G R+LVV+D EDRMLL DFL R+YVA DG DGYRKAQ V+PD+ILM Sbjct: 9 YPLIPGQLAGLRVLVVEDRPEDRMLLVDFLTSQDCRVYVAEDGNDGYRKAQLVQPDIILM 68 Query: 67 DIRMPVYDGLTSARLLKANSCTRNIPLIFLSAAASTEEKVNGLSVGAVDYITKPFDFEEV 126 D+ MPV DGL + RLLKA+ TR IP+IFL+AA+ E+V GLS GAVDY+ KPFDFEEV Sbjct: 69 DVNMPVCDGLAACRLLKADPATRAIPVIFLTAASLPMERVAGLSAGAVDYVAKPFDFEEV 128 Query: 127 RLRLCVHLRSTLHADLPPITQTPT--GSATQGGSSTFDMVLFQAARRLMMDKLDQPLGLN 184 RLRL +HLR T A P P G+ G ST D VLF+AAR+L+ ++LD L Sbjct: 129 RLRLLIHLRVTPVAQ-PASAAGPCEDGAPAAGTGSTLDGVLFRAARKLLRERLDHTPELV 187 Query: 185 ALAAAVGTNARRLSSAFKHCAGVTVFDFLREERMKEARRLLSESTLDIGAIALALGYSNT 244 ALA A+GTNARRL+ AF+ CAG TVF+FLREERM+EARRLL E+ LDI AI+ A+GY N Sbjct: 188 ALAQALGTNARRLNQAFRRCAGTTVFEFLREERMREARRLLCETGLDIQAISQAVGYGNR 247 Query: 245 ANFSTAFRERFGMPPSQFRR 264 NFSTAFRERFGM P+ R+ Sbjct: 248 GNFSTAFRERFGMAPTALRQ 267 >gb|EGP42967.1| AraC family two-component hybrid sensor/regulator transcription regulator protein [Achromobacter xylosoxidans AXX-A] Length = 276 Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats. Identities = 154/261 (59%), Positives = 189/261 (72%), Gaps = 3/261 (1%) Query: 7 HPVYAGPLSGQRILVVDDAEEDRMLLSDFLLRHGARLYVARDGQDGYRKAQTVRPDLILM 66 HP+ G L+G R+LVV+D EDRMLL DFL R+YVA DG DGYRKAQ V+PD+ILM Sbjct: 10 HPLLPGQLAGLRVLVVEDRPEDRMLLVDFLTSQDCRVYVAEDGNDGYRKAQLVQPDIILM 69 Query: 67 DIRMPVYDGLTSARLLKANSCTRNIPLIFLSAAASTEEKVNGLSVGAVDYITKPFDFEEV 126 D+ MPV DGL + RLLKA+ TR IP+IFL+AAA E+V GLS GAVDY+ KPFDFEEV Sbjct: 70 DVNMPVCDGLAACRLLKADQATRGIPIIFLTAAALPTERVAGLSAGAVDYVAKPFDFEEV 129 Query: 127 RLRLCVHLR---STLHADLPPITQTPTGSATQGGSSTFDMVLFQAARRLMMDKLDQPLGL 183 RLRL +HLR A P G++ ++ D VLF+AAR+L+ ++LD L Sbjct: 130 RLRLLIHLRVAPIPAPAPAPAAASPEDGTSAVAAGTSLDGVLFRAARKLLRERLDHTPEL 189 Query: 184 NALAAAVGTNARRLSSAFKHCAGVTVFDFLREERMKEARRLLSESTLDIGAIALALGYSN 243 ALA A+GTNARRL+ AF+ CAG TVF+FLREERM+EARRLL E+ LDI AI+ A+G+ N Sbjct: 190 VALAQALGTNARRLNQAFRRCAGTTVFEFLREERMREARRLLCETGLDIQAISQAVGFGN 249 Query: 244 TANFSTAFRERFGMPPSQFRR 264 NFSTAFRERFGM P+ R+ Sbjct: 250 RGNFSTAFRERFGMAPTALRQ 270 >ref|YP_002909870.1| AraC family two component transcriptional regulator [Burkholderia glumae BGR1] gb|ACR32634.1| Two component transcriptional regulator, AraC family [Burkholderia glumae BGR1] Length = 259 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 128/254 (50%), Positives = 168/254 (66%), Gaps = 16/254 (6%) Query: 18 RILVVDDAEEDRMLLSDFLLRHGARLYVARDGQDGYRKAQTVRPDLILMDIRMPVYDGLT 77 R+LVVDD +DR LL++FL + G R+++A DG DG KA+ VRPDLILMDI MP DGLT Sbjct: 3 RVLVVDDHLDDRSLLAEFLRQQGFRVFMASDGLDGLAKARVVRPDLILMDINMPNCDGLT 62 Query: 78 SARLLKANSCTRNIPLIFLSAAASTEEKVNGLSVGAVDYITKPFDFEEVRLRLCVHLR-- 135 + R LK + T +PLIFL+A+ EE+V GL GA+DYI KPF FEEVRLR+ +HLR Sbjct: 63 ACRKLKCDPATSAVPLIFLTASTQPEERVAGLEAGAIDYIAKPFHFEEVRLRIAIHLRLD 122 Query: 136 -----STLHADLPPITQTPTGSATQGGSSTFDMVLFQAARRLMMDKLDQPLGLNALAAAV 190 S + + P+ Q T D+ LF+ + +++ L + ALAA Sbjct: 123 SIAHDSESNVGIHPLNQEAT---------NIDLALFRQVKAIVLANFADELDVEALAARA 173 Query: 191 GTNARRLSSAFKHCAGVTVFDFLREERMKEARRLLSESTLDIGAIALALGYSNTANFSTA 250 GT+ RRLS A K C G+TVFD++REER+KE+RRLL ES DI IA ++GY+N ANF+TA Sbjct: 174 GTSPRRLSLALKRCIGLTVFDYIREERLKESRRLLLESNSDIVTIARSVGYTNGANFATA 233 Query: 251 FRERFGMPPSQFRR 264 F+ RFG+ PS RR Sbjct: 234 FKTRFGISPSVLRR 247