BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1158.p (589 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774788.1| hypothetical protein Hsero_1364 [Herbaspiril... 885 0.0 ref|YP_003775130.1| hypothetical protein Hsero_1709 [Herbaspiril... 616 e-174 ref|YP_003375709.1| hypothetical protein XALc_1211 [Xanthomonas ... 528 e-147 ref|ZP_02243079.1| hypothetical protein Xoryp_10570 [Xanthomonas... 485 e-134 ref|ZP_08181056.1| diguanylate cyclase/phosphodiesterase with GA... 484 e-134 >ref|YP_003774788.1| hypothetical protein Hsero_1364 [Herbaspirillum seropedicae SmR1] gb|ADJ62880.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 606 Score = 885 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 443/592 (74%), Positives = 503/592 (84%), Gaps = 3/592 (0%) Query: 1 MHADILRLTTPLTGQAGQAERERERLAVLDTYCVLDTHPDVLCDLVTELAATLFDTEIAL 60 MHAD+L+ + LT E++RLAVLD YC+LDT PD LCD++TELA LFD EIAL Sbjct: 1 MHADLLKQSPLLTPPLPLDAAEQQRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIAL 60 Query: 61 VSLVAENRQWFKSRRGLDAPGTPRSQSFCSHVIERDQVMVVLDATQDLRFADNPLVTGEP 120 VSLVAE+RQWFKSRRGLDAPGTPRSQSFC+H I + Q MV+ DA QD RFA NPLV GEP Sbjct: 61 VSLVAEHRQWFKSRRGLDAPGTPRSQSFCAHAIVQAQTMVIPDARQDERFAGNPLVLGEP 120 Query: 121 GIRFYAGAPLQASDGVRLGTLCVIGKSPRTAFGDADRTKLTQLAAIVMARLEILRVSSYV 180 GIRFYAGA L+ +DGV LGTLC+IGKSPR+ F + D+ +L +LAAIVMARL++LR+ SYV Sbjct: 121 GIRFYAGAALRTADGVALGTLCLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYV 180 Query: 181 DSLTSLPNRSRLTADLHSLAALGQDGEGLSG---KLTAVAVDICDRVYLRDMIKALGWDY 237 DSLTSLPNRSRL AD+ + A GL +L AVAVD+CD YL DM+KALGWDY Sbjct: 181 DSLTSLPNRSRLVADVQLMQAHATGLAGLDELPRRLAAVAVDVCDHTYLTDMVKALGWDY 240 Query: 238 VEGFLIQAKEQLRQSLGEVALYRIGTTTFAYLERRDIWQQQVEQIERAFAGTVEYQGIPH 297 VEGFLIQAKE+L Q+LGE+ALYRIG T+FAYL+R D WQ Q ++I +AFA TVE+QGIPH Sbjct: 241 VEGFLIQAKERLCQALGEMALYRIGATSFAYLDRCDRWQDQADRIRQAFAATVEHQGIPH 300 Query: 298 RLEISVGIVPLGQCDDIEELVPSLLTAADMARDCGSLQCRYEQPLGQQQKHSFELLSAIP 357 LE+SVGIVPL QC D ELVPSLLTAAD+AR G LQC+YEQPLGQ QKHSFELLS+IP Sbjct: 301 HLEVSVGIVPLSQCPDAAELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIP 360 Query: 358 GALLAGDQLWLEYQPKIALASGHCVGVEALLRWRHPVHGLISPALFIPLAEKTALIRQVT 417 ALL+ DQLWLE+QPK++L++G C GVEALLRWRHP+HG+ISPALFIPLAEKTALIRQVT Sbjct: 361 AALLSTDQLWLEFQPKVSLSTGRCAGVEALLRWRHPIHGVISPALFIPLAEKTALIRQVT 420 Query: 418 LWVLQHGIEQAAAWARRGRAVPVAINVSARDFDNDDLVQTLAIQLRRHRIPAGLIEIEFT 477 LWVLQ GIEQA AWARRG A+PVAINVSARDFDNDDL+Q L L +HRIPAGLIEIEFT Sbjct: 421 LWVLQRGIEQATAWARRGVAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFT 480 Query: 478 ESAMSKNPEALYGRIQEIKRLGVKVAIDDFGAGFSNLSYLKNIPADYLKIDQSFIRTMES 537 ESAMS+NPE LYGRIQEIKRLGVKVAIDDFGAGFSNLSYLK+IPADYLK+DQSFI MES Sbjct: 481 ESAMSRNPEKLYGRIQEIKRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMES 540 Query: 538 NYSDQQIVPSMIHLGQKLGFAVVAEGVETEKCRRILHHLGCEYGQGYGIARP 589 +YSDQQIVPSMIHLGQ+LGFAVVAEGVE EK RRIL HLGC++GQG+GIARP Sbjct: 541 DYSDQQIVPSMIHLGQRLGFAVVAEGVENEKTRRILQHLGCDFGQGFGIARP 592 >ref|YP_003775130.1| hypothetical protein Hsero_1709 [Herbaspirillum seropedicae SmR1] gb|ADJ63222.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 314/571 (54%), Positives = 405/571 (70%), Gaps = 5/571 (0%) Query: 21 RERERLAVLDTYCVLDTHPDVLCDLVTELAATLFDTEIALVSLVAENRQWFKSRRGLDAP 80 +E +RLA L YC LDT PD LCD VT+LA ++FD EIALV+LV E+RQWFKSR GL+ Sbjct: 17 QESQRLAQLHGYCALDTPPDKLCDQVTQLACSMFDVEIALVALVDEHRQWFKSRVGLEVS 76 Query: 81 GTPRSQSFCSHVIERDQVMVVLDATQDLRFADNPLVTGEPGIRFYAGAPLQASDGVRLGT 140 TPR+ SFC+H I+ MVV DA QD RF+ + LVTG P IRFYAGAPL G+ LGT Sbjct: 77 ETPRADSFCNHAIQTRHGMVVTDALQDARFSRHALVTGAPFIRFYAGAPLVTPQGLSLGT 136 Query: 141 LCVIGKSPRTAFGDADRTKLTQLAAIVMARLEILRVSSYVDSLTSLPNRSRLTADLHSLA 200 LC+I PR FG + +L QLAAIVM RLE LR Y+D +T+LPNR+RL + L Sbjct: 137 LCIIDSRPRPDFGASQFAQLNQLAAIVMERLEQLRNRGYIDHVTALPNRARL---MEVLR 193 Query: 201 ALGQDGEGLSGKLTAVAVDICDRVYLRDMIKALGWDYVEGFLIQAKEQLRQSLGEVALYR 260 G G SG AVAVDIC R YL DM+KALGWDY EGFL++ LR+ LG + LYR Sbjct: 194 VRGHARPGASGADAAVAVDICPREYLFDMVKALGWDYAEGFLMEVSRTLRRVLGTLPLYR 253 Query: 261 IGTTTFAYLERRDIWQQQ--VEQIERAFAGTVEYQGIPHRLEISVGIVPLGQCDDIEELV 318 + TTTF YL+ Q++ + IE+ F +E+QGIPH L+I++G++P+ + ++V Sbjct: 254 VTTTTFVYLDETAPAQRRRRIADIEQRFTPALEFQGIPHLLDIAIGVLPMEEDVSGGDVV 313 Query: 319 PSLLTAADMARDCGSLQCRYEQPLGQQQKHSFELLSAIPGALLAGDQLWLEYQPKIALAS 378 SLLT D++R+ G +E ++Q+++F LL+A+P AL D+L L +QPK+ L Sbjct: 314 RSLLTVIDVSREEGVSPRLFESVHAEKQRYAFWLLAALPMALTTPDELVLHFQPKVRLRD 373 Query: 379 GHCVGVEALLRWRHPVHGLISPALFIPLAEKTALIRQVTLWVLQHGIEQAAAWARRGRAV 438 G CVGVEAL+RW HP+HG I P +FIPLAEKT IRQVT WVL+ + Q A W + GRA+ Sbjct: 374 GACVGVEALIRWHHPIHGNIPPDVFIPLAEKTGQIRQVTAWVLRQVVAQVARWLKSGRAL 433 Query: 439 PVAINVSARDFDNDDLVQTLAIQLRRHRIPAGLIEIEFTESAMSKNPEALYGRIQEIKRL 498 PVA N SARDFD+D+L + LA QL+ H++P LIEIEFTE AM+ +P+ + R+Q ++ L Sbjct: 434 PVAFNASARDFDSDELRELLAQQLKLHKVPPALIEIEFTEHAMANHPQQVRQRVQALREL 493 Query: 499 GVKVAIDDFGAGFSNLSYLKNIPADYLKIDQSFIRTMESNYSDQQIVPSMIHLGQKLGFA 558 GVKVAIDDFGAGFSNLSYLKNIPAD +KID+SFI + + +DQ IVPS++HL LGF+ Sbjct: 494 GVKVAIDDFGAGFSNLSYLKNIPADTMKIDRSFIHRLLDDEADQLIVPSILHLAHNLGFS 553 Query: 559 VVAEGVETEKCRRILHHLGCEYGQGYGIARP 589 VVAEG+E+E+ +L HLGC+YGQGY IARP Sbjct: 554 VVAEGLESERTATLLRHLGCDYGQGYAIARP 584 >ref|YP_003375709.1| hypothetical protein XALc_1211 [Xanthomonas albilineans GPE PC73] emb|CBA15721.1| hypothetical protein XALc_1211 [Xanthomonas albilineans] Length = 595 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 279/571 (48%), Positives = 372/571 (65%), Gaps = 7/571 (1%) Query: 22 ERERLAVLDTYCVLDTHPDVLCDLVTELAATLFDTEIALVSLVAENRQWFKSRRGLDAPG 81 E RL VL C+LDT D++ DL+T+LAA IA+VSLV E RQWFKS+ G+D Sbjct: 12 EPTRLNVLQQLCLLDTPADLVFDLITQLAARHLKVPIAMVSLVDERRQWFKSKIGVDTAE 71 Query: 82 TPRSQSFCSHVIERDQVMVVLDATQDLRFADNPLVTGEPGIRFYAGAPLQASDGVRLGTL 141 TPRSQ+FC++ I+ +++VVLDA +D RF D+ LVTG P +RFYAGAPL +DG LG L Sbjct: 72 TPRSQAFCAYTIQSTELLVVLDAREDPRFRDSALVTGPPFVRFYAGAPLLMADGANLGAL 131 Query: 142 CVIGKSPRTAFGDADRTKLTQLAAIVMARLEILRVSSYVDSLTSLPNRSRLTADLHSLAA 201 CV+ PR F ++ R L L I+M R++ LR + ++D LT LPNR R DL + Sbjct: 132 CVVDTEPRQDFDESSRKTLEDLRDILMIRIDALRNAGFIDPLTQLPNRLRFNEDLTMWLS 191 Query: 202 LGQDGEGLSGKLTAVAVDICDRVYLRDMIKALGWDYVEGFLIQAKEQLRQSLGEVALYRI 261 L +G TAVAVD+C Y R+M+KALGW+Y EG+L+ ++++L Q+L + LYRI Sbjct: 192 L----QGTQQHNTAVAVDVCGTKYFREMVKALGWEYAEGYLLSSRDRLVQALDGIPLYRI 247 Query: 262 GTTTFAYL---ERRDIWQQQVEQIERAFAGTVEYQGIPHRLEISVGIVPLGQCDDIEELV 318 TTTF ++ D Q +++ AF +E+QGIPH S+G V L + Sbjct: 248 DTTTFVFVIEGSDEDKLAQWCDRVCDAFTLAIEHQGIPHVATPSLGAVYLDGGLSANHTL 307 Query: 319 PSLLTAADMARDCGSLQCRYEQPLGQQQKHSFELLSAIPGALLAGDQLWLEYQPKIALAS 378 SL TA DMAR G YE Q+ +F +L+A+P AL A QL L YQP++++ S Sbjct: 308 RSLTTAVDMARQRGLRWSLYELSHDANQRSAFRILAALPEALSAHGQLSLHYQPRVSMHS 367 Query: 379 GHCVGVEALLRWRHPVHGLISPALFIPLAEKTALIRQVTLWVLQHGIEQAAAWARRGRAV 438 G C GVEALLRW HP+ G ++P FIPLAEKTAL+ Q+T WVLQ GI QAA W +RG Sbjct: 368 GACTGVEALLRWEHPLLGAVAPNNFIPLAEKTALMPQITAWVLQTGIAQAALWQQRGHRF 427 Query: 439 PVAINVSARDFDNDDLVQTLAIQLRRHRIPAGLIEIEFTESAMSKNPEALYGRIQEIKRL 498 V++NVSA D + D + L L +H + G IEIEFTESAM ++P+ + ++Q+I L Sbjct: 428 AVSLNVSAVDLEQADFITNLRSLLAQHALAPGAIEIEFTESAMIRHPQRVAEQLQQISAL 487 Query: 499 GVKVAIDDFGAGFSNLSYLKNIPADYLKIDQSFIRTMESNYSDQQIVPSMIHLGQKLGFA 558 GVK+AIDDFG G+SNL YLK+IPA LKIDQSFIRT+ ++ SD +VP+MI LG G Sbjct: 488 GVKIAIDDFGTGYSNLGYLKSIPAHALKIDQSFIRTLPASRSDSVLVPAMIRLGHDFGQQ 547 Query: 559 VVAEGVETEKCRRILHHLGCEYGQGYGIARP 589 VVAEG+E+E ++L GC+ GQGY IA+P Sbjct: 548 VVAEGIESETVYQMLRDWGCDEGQGYWIAKP 578 >ref|ZP_02243079.1| hypothetical protein Xoryp_10570 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 618 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 277/578 (47%), Positives = 366/578 (63%), Gaps = 21/578 (3%) Query: 22 ERERLAVLDTYCVLDTHPDVLCDLVTELAATLFDTEIALVSLVAENRQWFKSRRGLDAPG 81 E RLAVL C+LD+ PD + D V +AA TEIALVSLV E+RQWFK+R GL+ Sbjct: 18 ESTRLAVLRGLCLLDSPPDPVFDTVAAMAARSMGTEIALVSLVDEHRQWFKARIGLEERE 77 Query: 82 TPRSQSFCSHVIERDQVMVVLDATQDLRFADNPLVTGEPGIRFYAGAPLQASDGVRLGTL 141 TPRSQ+FC+H I D+VMVVLDA D R+ DNPLV G P IRFY GAPL+ DG +GTL Sbjct: 78 TPRSQAFCTHAIRSDEVMVVLDARLDPRWCDNPLVLGPPFIRFYVGAPLKLRDGHSIGTL 137 Query: 142 CVIGKSPRTAFGDADRTKLTQLAAIVMARLEILRVSSYVDSLTSLPNRSRLTADLHSLAA 201 C IG SPR A T+L L + + R+E LR ++Y D T LPNRSR + DL + Sbjct: 138 CAIGTSPREGLDAAAITQLEGLRDLAVLRVENLRSNTYRDGPTGLPNRSRFSEDLDTW-- 195 Query: 202 LGQDGEGLSGKLTAVAVDICDRVYLRDMIKALGWDYVEGFLIQAKEQLRQSL-GEVALYR 260 L Q + TAVA+D+C YLRDM+KALGW+Y +G++ A+ +L SL G LYR Sbjct: 196 LSQ--RDTAPATTAVAIDVCGSDYLRDMVKALGWEYADGYVSTAQRRLTASLPGGTILYR 253 Query: 261 IGTTTFAYLERRDIWQQQVE---------QIERAFAGTVEYQGIPHRLEISVGIVPLGQC 311 + TTF + Q Q E ++ +AFA +E+QGIPH S+G V L Sbjct: 254 LDPTTFCF-------QAQAEGQRLATLCTKVSKAFAEPLEHQGIPHTAVASIGAVSLQSS 306 Query: 312 DDIEELVPSLLTAADMARDCGSLQCRYEQPLGQQQKHSFELLSAIPGALLAGDQLWLEYQ 371 +++ SL T+ D+AR+ YE+ Q+++F LL+A+P AL + +QL L YQ Sbjct: 307 YGAADIIRSLTTSVDIARERCMPWSMYERKHDVAQRNTFRLLAALPAALDSNNQLRLHYQ 366 Query: 372 PKIALASGHCVGVEALLRWRHPVHGLISPALFIPLAEKTALIRQVTLWVLQHGIEQAAAW 431 P++ L CVGVEALLRW+HP+ G + P+ FIP+AEKTALI +T WV+ +GI QAA W Sbjct: 367 PRVDLHDHRCVGVEALLRWQHPLIGPVVPSDFIPMAEKTALINHITAWVIDNGIAQAARW 426 Query: 432 ARRGRAVPVAINVSARDFDNDDLVQTLAIQLRRHRIPAGLIEIEFTESAMSKNPEALYGR 491 ++G +A+NVSA D D L L R+++ +EIEFTESAM ++PE L + Sbjct: 427 QQQGLDFNLALNVSAADLDRPGFADLLRRGLDRYKLDPRRLEIEFTESAMIRHPEQLAEQ 486 Query: 492 IQEIKRLGVKVAIDDFGAGFSNLSYLKNIPADYLKIDQSFIRTMESNYSDQQIVPSMIHL 551 + I LGV +AIDDFG G+SN SYLK +PA LKIDQSFIR++ N +D+ +VP+MI L Sbjct: 487 LAAIAALGVHIAIDDFGTGYSNFSYLKQLPASALKIDQSFIRSLPDNRTDRTLVPAMIQL 546 Query: 552 GQKLGFAVVAEGVETEKCRRILHHLGCEYGQGYGIARP 589 G LG VVAEG+E+ + L GC+ GQGY IA+P Sbjct: 547 GHSLGQRVVAEGIESAEAYAHLRAWGCDEGQGYWIAKP 584 >ref|ZP_08181056.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Xanthomonas vesicatoria ATCC 35937] gb|EGD06727.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Xanthomonas vesicatoria ATCC 35937] Length = 604 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 273/571 (47%), Positives = 362/571 (63%), Gaps = 7/571 (1%) Query: 22 ERERLAVLDTYCVLDTHPDVLCDLVTELAATLFDTEIALVSLVAENRQWFKSRRGLDAPG 81 E RLAVL C+LD+ PD + + + +AA EIALVSLV E+RQWFK+R GL+A Sbjct: 4 EATRLAVLRGLCLLDSPPDPVFETIAAMAARSLGAEIALVSLVDEHRQWFKARVGLEAAE 63 Query: 82 TPRSQSFCSHVIERDQVMVVLDATQDLRFADNPLVTGEPGIRFYAGAPLQASDGVRLGTL 141 TPR Q+FC+H I D+VMVV DA D RF+DNPLV G P IRFYAGAPLQ DG R+GTL Sbjct: 64 TPRDQAFCAHAIRSDEVMVVPDAALDPRFSDNPLVLGPPFIRFYAGAPLQLKDGHRIGTL 123 Query: 142 CVIGKSPRTAFGDADRTKLTQLAAIVMARLEILRVSSYVDSLTSLPNRSRLTADLHSLAA 201 CVIG SPR T L L + + R+E LR ++Y D T LPNRSR DL A Sbjct: 124 CVIGTSPRDGLDAEALTHLRGLRDLAVLRVENLRSTTYRDGPTGLPNRSRFGEDLD--AW 181 Query: 202 LGQDGEGLSGKLTAVAVDICDRVYLRDMIKALGWDYVEGFLIQAKEQLRQSL-GEVALYR 260 L Q + TAVAVDIC Y RDM+KALGWDY +G++ A+ +L L + LYR Sbjct: 182 LSQ--RDTAPATTAVAVDICGSDYFRDMVKALGWDYADGYVTLAQRRLAAYLPAKTMLYR 239 Query: 261 IGTTTFAYLERRDIWQQQ--VEQIERAFAGTVEYQGIPHRLEISVGIVPLGQCDDIEELV 318 + TTF +L + + + ++ +AFA +++QGIPH E S+G V L + + Sbjct: 240 LDPTTFGFLTQAESQRLSSLCTKVSKAFAEPLDHQGIPHTAEASIGAVSLQTSYGAADTL 299 Query: 319 PSLLTAADMARDCGSLQCRYEQPLGQQQKHSFELLSAIPGALLAGDQLWLEYQPKIALAS 378 SL TA D++R+ YE+ Q+++F LL+A+P AL + QL L YQP++ L Sbjct: 300 RSLTTAVDVSRERCQAWSMYERKHDVAQRNTFRLLAALPAALDSASQLRLHYQPRVDLND 359 Query: 379 GHCVGVEALLRWRHPVHGLISPALFIPLAEKTALIRQVTLWVLQHGIEQAAAWARRGRAV 438 CV VEALLRW+HP+ G + P+ F+P+AEKTALI ++T WV+ +GI QAA W +G Sbjct: 360 NRCVAVEALLRWQHPMIGPVMPSDFVPMAEKTALINRITAWVIDNGIAQAARWQEQGLDF 419 Query: 439 PVAINVSARDFDNDDLVQTLAIQLRRHRIPAGLIEIEFTESAMSKNPEALYGRIQEIKRL 498 +A+NVSA D D L L RH++ +EIEFTESAM ++P+ L ++ + L Sbjct: 420 NLALNVSAADLDRPGFAGLLRRGLERHKLDPRRLEIEFTESAMIRHPDHLAEQLATVAAL 479 Query: 499 GVKVAIDDFGAGFSNLSYLKNIPADYLKIDQSFIRTMESNYSDQQIVPSMIHLGQKLGFA 558 GV +AIDDFG G+SN SYLK +PA LKIDQSFIR++ N +D+ +VP+MI LG LG Sbjct: 480 GVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDNRTDRTLVPAMIQLGHSLGQR 539 Query: 559 VVAEGVETEKCRRILHHLGCEYGQGYGIARP 589 VVAEG+E+ + L GC+ GQGY IA+P Sbjct: 540 VVAEGIESAEAYAQLRAWGCDEGQGYWIAKP 570