BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1156.p (585 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774787.1| methyl-accepting chemotaxis sensory transduc... 732 0.0 ref|YP_004235196.1| methyl-accepting chemotaxis sensory transduc... 389 e-105 ref|YP_970843.1| methyl-accepting chemotaxis sensory transducer ... 386 e-105 ref|YP_970314.1| methyl-accepting chemotaxis sensory transducer ... 386 e-105 ref|YP_004235676.1| methyl-accepting chemotaxis sensory transduc... 382 e-103 >ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62879.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 477/585 (81%), Positives = 538/585 (91%) Query: 1 MKISDLKIGTRLYIGFGLVSAILVILVSVAYANFARLGVATDMNIHSYEARAEMQAMLES 60 MK++DLKIGTRLY+GFGLV+AILVILVSVAY NFARLG A ++N+H+YE RA+++AM ES Sbjct: 1 MKLADLKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAES 60 Query: 61 LINMETGTRGFALTGNEASLEPMQQGLASFKTHLDKARQLTVDNPTQQQRLQQVAEAEQR 120 LIN+ETG RGF+L+G +ASLEP G+ +FKT L+K R LT DN QQQRLQ+++++EQR Sbjct: 61 LINIETGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQR 120 Query: 121 WVSTAIEPTIALRRAVRDGREDMSKLVALVQAGRGKAEMDNMRAIFAEMDRMESSLQQER 180 W+ +AI+P I LRRAVR+GRE M+ +VA QAG+GK++MD+MR + ++DR ES+L ER Sbjct: 121 WLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLDRTESALLGER 180 Query: 181 SDQADALEALTGKTLIIGGVVAVVLALLLAWWLANNITRPLAVAVRLARQVAGGDLSACI 240 +++A AL ++T TLI GG +A++LA+LLAWWLANNITRPLA+AV+LAR+VA GDL+A I Sbjct: 181 AEEAAALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPLALAVQLARRVASGDLTARI 240 Query: 241 EVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLDLSSRTEQQASS 300 EV SRDETG LL AL+DMN SLVRIVSGVRRGT+MIATASS+IA+GNLDLSSRTEQQASS Sbjct: 241 EVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASS 300 Query: 301 LEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETMEEINASSRKI 360 LEETASSMEELTSTVQQN+ANAREANRMAQAASDIASSGGGVV+RVV+TMEEIN SSRKI Sbjct: 301 LEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKI 360 Query: 361 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIKALI Sbjct: 361 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALI 420 Query: 421 SDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIEQVSQAVGHMD 480 SDSVAKVESGS+LVNEAGDTMREIVESVQRVT MINEISAAGEEQRSGIEQVSQAVG MD Sbjct: 421 SDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMD 480 Query: 481 QVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPEPAPASVAASRSGV 540 QVTQQNAALVE+AAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPEPAPASVAASRSGV Sbjct: 481 QVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPEPAPASVAASRSGV 540 Query: 541 RPATRSSRLPSPVGPSASPSASPMHPAPASGSRLSSGASDEWVTF 585 RPATRSSRLPSPVGPSASPSASPMHPAPASGSRLSS +DEWVTF Sbjct: 541 RPATRSSRLPSPVGPSASPSASPMHPAPASGSRLSSADADEWVTF 585 >ref|YP_004235196.1| methyl-accepting chemotaxis sensory transducer [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46629.1| methyl-accepting chemotaxis sensory transducer [Acidovorax avenae subsp. avenae ATCC 19860] Length = 537 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 267/517 (51%), Positives = 350/517 (67%), Gaps = 1/517 (0%) Query: 1 MKISDLKIGTRLYIGFGLVSAILVILVSVAYANFARLGVATDMNIHSYEARAEMQAMLES 60 M +S+ + RL + F V I + ++ VA + L A +MN H+Y Q ML+S Sbjct: 1 MFLSNWPLARRLSLAFAGVIGIFLTVIGVAIKSQNELKKADEMNQHTYVVLGVGQEMLQS 60 Query: 61 LINMETGTRGFALTGNEASLEPMQQGLASFKTHLDKARQLTVDNPTQQQRLQQVAEAEQR 120 ++NMETG RGF L G + LEP G+ SF KA+ LT DNP QQ+RL+ + ++ Sbjct: 61 MVNMETGARGFLLAGEDRFLEPWTTGIKSFDAAWSKAKSLTSDNPAQQKRLEDMRARKEE 120 Query: 121 WVSTAIEPTIALRRAVRDGREDMSKLVALVQAGRGKAEMDNMRAIFAEMDRMESSLQQER 180 +VS +E LR+ V G +A + G KA MD RA+ A+ +ME L R Sbjct: 121 FVSI-VEKMQGLRKEVNSGAVSWDDFLAEFRKGLDKAAMDGFRALEADFSKMERDLLAVR 179 Query: 181 SDQADALEALTGKTLIIGGVVAVVLALLLAWWLANNITRPLAVAVRLARQVAGGDLSACI 240 S D T G +AV +A LL W+ +ITRP++ A+ +A+ VA GDL+ I Sbjct: 180 SAALDGARRTTLMLEFGGSALAVAMATLLGMWVIRSITRPVSQALGVAQAVADGDLTTHI 239 Query: 241 EVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLDLSSRTEQQASS 300 +V +RDE G LL +L+ MN SL +V+ VR G++ +A AS+QIA GN DLS+RTE+QAS+ Sbjct: 240 DVAARDEVGTLLLSLKSMNESLAHVVTRVREGSESVAAASTQIAQGNSDLSARTERQASA 299 Query: 301 LEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETMEEINASSRKI 360 L++TA+SMEEL STV+QN+ +AR+AN+ AQ AS +A+ GG VVS+VV+TM+ I+ SSRKI Sbjct: 300 LQQTAASMEELGSTVKQNADHARQANQFAQEASVVATRGGEVVSQVVQTMKGISESSRKI 359 Query: 361 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLA RSA AAKEIK LI Sbjct: 360 ADIINVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAVRSAEAAKEIKNLI 419 Query: 421 SDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIEQVSQAVGHMD 480 SVA+VE G L + AG TM E+ S++RVT ++ EISAA EQ +G+ QV +AV MD Sbjct: 420 DTSVARVEMGEQLADRAGTTMGEVAGSIRRVTDIMGEISAASGEQSAGVNQVGEAVIQMD 479 Query: 481 QVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRLE 517 QVTQQNAALVEE AAA+ SL+ QAQ+L AV +F+L+ Sbjct: 480 QVTQQNAALVEEIAAAAASLKAQAQDLVHAVGIFKLD 516 >ref|YP_970843.1| methyl-accepting chemotaxis sensory transducer [Acidovorax citrulli AAC00-1] gb|ABM33069.1| methyl-accepting chemotaxis sensory transducer [Acidovorax citrulli AAC00-1] Length = 537 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 268/517 (51%), Positives = 349/517 (67%), Gaps = 1/517 (0%) Query: 1 MKISDLKIGTRLYIGFGLVSAILVILVSVAYANFARLGVATDMNIHSYEARAEMQAMLES 60 M S+ + RL + F V I ++++ VA + L A +MN H++ Q ML+S Sbjct: 1 MIFSNWPLARRLSLAFAGVIGIFLVVIGVAIKSQNELKQADEMNQHTHVVLGVGQEMLQS 60 Query: 61 LINMETGTRGFALTGNEASLEPMQQGLASFKTHLDKARQLTVDNPTQQQRLQQVAEAEQR 120 ++NMETG RGF L G E LEP G+ SF +KAR LT DNP QQ+RL+ + + Sbjct: 61 MVNMETGARGFLLAGEERFLEPWAAGIKSFDAAWNKARSLTSDNPAQQKRLEDMRIRKAE 120 Query: 121 WVSTAIEPTIALRRAVRDGREDMSKLVALVQAGRGKAEMDNMRAIFAEMDRMESSLQQER 180 +VS +E LRR V G +A + G KA MD RA+ +ME L R Sbjct: 121 FVSI-VEKMQGLRREVNSGAVSWEDFLAEFRKGLDKAAMDGFRALEGGFSKMERDLLAVR 179 Query: 181 SDQADALEALTGKTLIIGGVVAVVLALLLAWWLANNITRPLAVAVRLARQVAGGDLSACI 240 + D+ T G +AV +A L W+ +IT+P++ A+ +A+ VA GDL+ I Sbjct: 180 AAALDSARRTTLMLEFGGAALAVAMATFLGMWVIRSITKPVSQALGVAQAVADGDLTTHI 239 Query: 241 EVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLDLSSRTEQQASS 300 +V +RDE G LL +L+ MN SL +V+ VR G++ +A AS+QIA GN DLS RTE+QAS+ Sbjct: 240 DVAARDEVGTLLLSLKSMNESLTHVVTRVREGSESVAAASTQIAQGNSDLSVRTERQASA 299 Query: 301 LEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETMEEINASSRKI 360 L++TA+SME+L STV+QN+ NAR+AN+ AQ AS +A+ GG VVS+VVETM+ I+ SSRKI Sbjct: 300 LQQTAASMEQLGSTVKQNADNARQANQFAQDASVVATRGGEVVSQVVETMKGISESSRKI 359 Query: 361 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLA RSA AAKEIK LI Sbjct: 360 ADIINVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAVRSAEAAKEIKDLI 419 Query: 421 SDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIEQVSQAVGHMD 480 + SVA+VE L + AG TM E+V S++RVT ++ EISAA EQ +G+ QV +AV MD Sbjct: 420 NTSVARVEMDEQLADRAGSTMGEVVGSIRRVTEIMGEISAASGEQSAGVNQVGEAVIQMD 479 Query: 481 QVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRLE 517 QVTQQNAALVEE AAA+ SL+ QAQ+L QAV +F+LE Sbjct: 480 QVTQQNAALVEEIAAAAASLRAQAQDLVQAVGIFKLE 516 >ref|YP_970314.1| methyl-accepting chemotaxis sensory transducer [Acidovorax citrulli AAC00-1] gb|ABM32540.1| methyl-accepting chemotaxis sensory transducer [Acidovorax citrulli AAC00-1] Length = 598 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 296/579 (51%), Positives = 380/579 (65%), Gaps = 3/579 (0%) Query: 1 MKISDLKIGTRLYIGFGLVSAILVILVSVAYANFARLGVATDMNIHSYEARAEMQAMLES 60 M IS +G RL + FG V AI ++++ VA + + A+ MNIH+Y E + ML Sbjct: 1 MNISHWPLGRRLALAFGGVIAIFLVVIGVAIQSQNHIKAASGMNIHTYRVLEEARRMLLG 60 Query: 61 LINMETGTRGFALTGNEASLEPMQQGLASFKTHLDKARQLTVDNPTQQQRLQQVAEAEQR 120 ++NMETG RG+ L+G+ A L+P QG +F++ R LT DNP QQ+RL V A Q Sbjct: 61 VVNMETGARGYLLSGDAAFLDPWNQGREAFESAWQSLRSLTADNPEQQKRLD-VLRARQA 119 Query: 121 WVSTAIEPTIALRRAVRDGREDMSKLVALVQAGRGKAEMDNMRAIFAEMDRMESSLQQER 180 + ++ +RR V G+ M V+ R KA MD+ R + E + E L R Sbjct: 120 DFAAVMQSLQDMRRDVDAGKVTMEAFVSEFGKARDKAAMDDFRTMQTEFSKAERDLLDVR 179 Query: 181 SDQADALEALTGKTLIIGGVVAVVLALLLAWWLANNITRPLAVAVRLARQVAGGDLSACI 240 A+ A + G +AVV+ALLL+ W+ +ITRP+A AV +AR VA GDL+ I Sbjct: 180 LADAEDARATALAAEVGGTALAVVVALLLSLWVTRSITRPIARAVEVARAVAAGDLTQRI 239 Query: 241 EVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLDLSSRTEQQASS 300 EV +RDE G LL +LRDMN +L +VS VR+G++ +A+AS QIA GN DLSSRTE QAS+ Sbjct: 240 EVHARDEVGLLLESLRDMNTALATVVSRVRQGSESVASASMQIAQGNSDLSSRTESQASA 299 Query: 301 LEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETMEEINASSRKI 360 LEETA+SMEEL STV QN+ NAR+AN++AQAAS +A GG VVS+VV+TM+ I+ SSR+I Sbjct: 300 LEETAASMEELGSTVAQNADNARQANQLAQAASGVAEQGGAVVSQVVDTMKGISESSRRI 359 Query: 361 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK LI Sbjct: 360 SDIINVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELI 419 Query: 421 SDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIEQVSQAVGHMD 480 + SV +VE G+ L + AG TM E+V S++RVT ++ EISAA EQ +G+ QV +AV MD Sbjct: 420 TASVERVEDGAQLADRAGSTMTEVVGSIRRVTDIMGEISAASSEQSAGVAQVGEAVTQMD 479 Query: 481 QVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPEPAPASVAASRSGV 540 Q TQQNAALVEE AAA+ SL+ QAQ+L QAVSVFRL A P A A + + Sbjct: 480 QTTQQNAALVEEMAAAASSLRSQAQDLVQAVSVFRL-ASDTPRAEPVEVTAPTAVTVAPA 538 Query: 541 RPATRSSRLPSPVGPSASPSASPMHPAPASGSRLSSGAS 579 + P P P+ S + M P+PA L A+ Sbjct: 539 PSPAPAVAAPRPSMPARRKSPAKM-PSPARTPSLRPAAA 576 >ref|YP_004235676.1| methyl-accepting chemotaxis sensory transducer [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47109.1| methyl-accepting chemotaxis sensory transducer [Acidovorax avenae subsp. avenae ATCC 19860] Length = 592 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 292/568 (51%), Positives = 377/568 (66%), Gaps = 6/568 (1%) Query: 1 MKISDLKIGTRLYIGFGLVSAILVILVSVAYANFARLGVATDMNIHSYEARAEMQAMLES 60 M IS +G RL + FG V AI ++++ VA + + AT MNIH+Y+ E Q ML Sbjct: 1 MNISHWPLGRRLALAFGGVIAIFLVVIGVAIQSQNHIKTATSMNIHTYKVLEEAQRMLLG 60 Query: 61 LINMETGTRGFALTGNEASLEPMQQGLASFKTHLDKARQLTVDNPTQQQRLQQVAEAEQR 120 ++NMETG RG+ L+G+ A L P QG +F + R LT DNP QQ+RL V A Q Sbjct: 61 VVNMETGARGYLLSGSTAFLGPWSQGRETFDSAWQSLRTLTADNPEQQKRLD-VLRARQA 119 Query: 121 WVSTAIEPTIALRRAVRDGREDMSKLVALVQAGRGKAEMDNMRAIFAEMDRMESSLQQER 180 + ++ +RR V G+ M V+ R KA MD R + E + E L R Sbjct: 120 DFAAVMQSLQDMRRDVDAGKVPMEAFVSEFGKARDKAAMDGFRTMQTEFSKAERDLLDVR 179 Query: 181 SDQADALEALTGKTLIIGGVVAVVLALLLAWWLANNITRPLAVAVRLARQVAGGDLSACI 240 +A+ A + G +AV++ALLL+ W+ +ITRP+A AV +AR VA GDL+ I Sbjct: 180 QAEAEDARATALAVEVGGTALAVLVALLLSLWVTRSITRPIARAVDVARAVAAGDLTQRI 239 Query: 241 EVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLDLSSRTEQQASS 300 E+ +RDE G LL +LRDMN +L +VS VR+G++ +A+AS QIA GN DLSSRTE QAS+ Sbjct: 240 EIHARDEVGLLLESLRDMNTALATVVSRVRQGSESVASASMQIAQGNSDLSSRTESQASA 299 Query: 301 LEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETMEEINASSRKI 360 LEETA+SMEEL STV QN+ NAR+AN++AQA+S +A GG VV++VV+TM+ I+ SSR+I Sbjct: 300 LEETAASMEELGSTVAQNADNARQANQLAQASSGVAEQGGAVVAQVVDTMKGISESSRRI 359 Query: 361 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK LI Sbjct: 360 SDIINVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELI 419 Query: 421 SDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIEQVSQAVGHMD 480 + SV +VESG+ L + AG TM E+V S++RVT ++ EISAA EQ +G+ QV +AV MD Sbjct: 420 TASVERVESGAQLADRAGSTMTEVVGSIRRVTDIMGEISAASSEQSAGVAQVGEAVTQMD 479 Query: 481 QVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRL--EAGQALEVAPEPAPASVAASRS 538 Q TQQNAALVEE AAA+ SL+ QAQ+L QAVSVFRL + QA + A S Sbjct: 480 QTTQQNAALVEEMAAAASSLRSQAQDLVQAVSVFRLASDTPQAAVAVAPSVAVAPAVSAP 539 Query: 539 GVRPATRSSRLPSPV---GPSASPSASP 563 + +R PSP P+ +P+ P Sbjct: 540 VAARPSEPARKPSPAKVRAPARTPALRP 567