BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1155.p (332 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774786.1| MerR-family transcription regulator protein ... 333 2e-89 ref|ZP_06685016.1| conserved hypothetical protein [Achromobacter... 150 2e-34 ref|YP_003773849.1| hypothetical protein Hsero_0416 [Herbaspiril... 138 1e-30 ref|YP_001858576.1| MerR family transcriptional regulator [Burkh... 136 6e-30 gb|EGD05984.1| MerR family transcriptional regulator [Burkholder... 132 1e-28 >ref|YP_003774786.1| MerR-family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62878.1| MerR-family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 195/318 (61%), Positives = 232/318 (72%), Gaps = 6/318 (1%) Query: 18 ELSDLPLLRPGAVARQLGMAVETLRAWEHRYGITSSQHSGGGQRLYSQEDMQRLVWIKTL 77 EL++LPLLRPGAVARQLGM+VETLRAWE+RYG+TSS HSGGGQRLYSQED+QRL IK L Sbjct: 11 ELNELPLLRPGAVARQLGMSVETLRAWENRYGLTSSHHSGGGQRLYSQEDVQRLAHIKRL 70 Query: 78 VDAGHRIGKLATLSPRDLQALAQSLPAEGSGSHERQAGPATRLALVGPWIATKAVGQALA 137 VD GHRIG+LA L L++L S A G AG RL L GPWI++ +AL Sbjct: 71 VDEGHRIGQLAALPLEALKSLDPSPEAAGPAGQTTLAG--LRLVLAGPWISSTGCIEALR 128 Query: 138 HRQLSVIMAVESLDELDLRQFEGD----LLLLESTVLDSDLDQRLEGLRRDGVQVPVLIL 193 +Q SV AV+ L+EL D LLL+ES VLD L R+E +RR V+IL Sbjct: 129 QQQASVSAAVQDLEELRQSSLGLDTGVALLLVESAVLDPGLGGRMESVRRSFASARVVIL 188 Query: 194 YRFGSPEMVVRLREAGHRVVRKAVEGIDVEWLCEMIRRMEPAAAQTPGEDEWVPEPRFSE 253 YRFGSPEMV RL +AGH++VRK ++GID WLCE++RR++ + + VP PRFSE Sbjct: 189 YRFGSPEMVARLTQAGHQLVRKPMDGIDPAWLCELVRRLDLPPGEVQMDSPDVPAPRFSE 248 Query: 254 SALASVSDQSDRMQCECPRHLAELLTALAGFERYSRQCEDDTTEEAELHRALCIAAGQAR 313 + LA VS S RMQCECPRHLAELLTAL GFERYSRQCED++ EEA LHR LC+AAG+AR Sbjct: 249 AELAQVSQASTRMQCECPRHLAELLTALVGFERYSRQCEDESEEEAALHRELCLAAGRAR 308 Query: 314 LPLEEALQRLARVKGITL 331 LPLEE LQRLA+VKGI+L Sbjct: 309 LPLEETLQRLAQVKGISL 326 >ref|ZP_06685016.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF78083.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 320 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 116/313 (37%), Positives = 156/313 (49%), Gaps = 22/313 (7%) Query: 26 RPGAVARQLGMAVETLRAWEHRYGITSSQHSGGGQRLYSQEDMQRLVWIKTLVDAGHRIG 85 R G AR G+ VETLR WE RY ++S + S GQRLYS E + RL +K L D GH IG Sbjct: 16 RTGVAARLAGLPVETLRVWERRYHLSSPERSPRGQRLYSAEQVHRLRLLKQLADQGHAIG 75 Query: 86 KLATLSPRDLQALAQSLPAEGSGSHERQAGPATRLALVGPWIATKAVGQA---------L 136 LATL+ LQA+ + P+ A PA R +G +A + G + Sbjct: 76 TLATLTLEQLQAMLGAQPS--------LASPALRAVAIGATLAPRLSGGVPGQDGVVDFM 127 Query: 137 AHRQLSVIMAVESLDELDLRQFEGDLLLLESTVLDSDLDQRLEGLRRDGVQVPVLILYRF 196 A + VI A LD+ D+L++E + LD++ +E R V++LYRF Sbjct: 128 AGPDVRVIGACARLDDAGSLPRHADVLIIEISELDANALAPIERARDATETGAVVVLYRF 187 Query: 197 GSPEMVVRLREAGHRVVRKAVEGIDVEWLCEMIRRMEPAAAQTPGEDEWVPEPRFSESAL 256 S + LR G V R + ++ LC AA P F+E AL Sbjct: 188 SSNATIRTLRAQGCLVARIPAQLNELAPLCRSAVAGLNLAALGPAS-----AVEFNEDAL 242 Query: 257 ASVSDQSDRMQCECPRHLAELLTALAGFERYSRQCEDDTTEEAELHRALCIAAGQARLPL 316 A + + + CECPRHLAELL + FERYS QC +A+LH AL AAGQAR L Sbjct: 243 AKIMTLRNPITCECPRHLAELLMMVGSFERYSAQCASRDEADAQLHLALQQAAGQARGIL 302 Query: 317 EEALQRLARVKGI 329 E A+ RL + +G+ Sbjct: 303 EIAMNRLLQTEGM 315 >ref|YP_003773849.1| hypothetical protein Hsero_0416 [Herbaspirillum seropedicae SmR1] gb|ADJ61941.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 347 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 115/339 (33%), Positives = 171/339 (50%), Gaps = 21/339 (6%) Query: 8 SSPAPAAETAELSD------LPLLRPGAVARQLGMAVETLRAWEHRYGITSSQHSGGGQR 61 + P P A T+ S PL R GAVAR L M V TLR WE RY +T Q S GQR Sbjct: 2 TEPIPTAPTSSTSSPEEKGPAPLRRTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQR 61 Query: 62 LYSQEDMQRLVWIKTLVDAGHRIGKLATLSPRDLQALAQSLPAEGSGSHERQAGPAT--- 118 LYS+ D++RL I+ L + GH IG LA L LQ +A + +G R P Sbjct: 62 LYSEADVRRLALIRQLTELGHAIGSLAGLDMEQLQQVAATHAELHAG---RPTPPEAVQG 118 Query: 119 --RLALVGPWIATKAVGQALAH---RQLSVIMAVESLDE--LDLRQFEGDLLLLESTVLD 171 RLA++G +A + L R L ++ E++++ + L++ E D LLL L Sbjct: 119 RWRLAVIGSTLAQRLDKPGLLQRLGRPLQLLGPFENIEQAAMALKREEVDALLLHEPQLH 178 Query: 172 SDLDQRLEGLRRDGVQVPVLILYRFGSPEMVVRLREAGHRVVRKAVEGIDV-EWLCEMIR 230 + LE +P+ +LY F S + L G ++R + + +WL ++ Sbjct: 179 AGWLGALESSAPALSGLPMAVLYGFASEAVCETLAAVGISLLRAPQPDVVILQWLRGLVA 238 Query: 231 RMEPAAAQTPGEDEWVPEPRFSESALASVSDQSDRMQCECPRHLAELLTALAGFERYSRQ 290 PA + +P R+S++ L + ++QS + CECPRH+AELL L+ FERYS Q Sbjct: 239 LSSPAREEMAA-GTVLPPRRWSDNQLIAFANQSTTVACECPRHVAELLMQLSQFERYSAQ 297 Query: 291 CEDDTTEEAELHRALCIAAGQARLPLEEALQRLARVKGI 329 C + +A+LH+ L ++R E AL R+A +G+ Sbjct: 298 CANRNVADAQLHQYLQQLTSESRQRFEMALTRIAEHEGL 336 >ref|YP_001858576.1| MerR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC71530.1| transcriptional regulator, MerR family [Burkholderia phymatum STM815] Length = 327 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 151/308 (49%), Gaps = 6/308 (1%) Query: 23 PLLRPGAVARQLGMAVETLRAWEHRYGITSSQHSGGGQRLYSQEDMQRLVWIKTLVDAGH 82 P R GAVAR + V TLR WE RYG+ + + G RLYS+ D++R+ IK LVD G+ Sbjct: 12 PRYRIGAVARMANLPVGTLRIWERRYGVVAPPTTQSGHRLYSEADVRRVAMIKGLVDRGY 71 Query: 83 RIGKLATLSPRDLQALAQSLPAEGSGSHERQAGPATRLALVGPWIATKAVGQALAHRQLS 142 IG +ATL +L+ LA + S + P RL +VG +A+ + Q L Sbjct: 72 SIGSIATLQTGELERLAFMHVDKTPVSPLTEGRPGLRLRIVGAALAS-TIRQHLHAMHAE 130 Query: 143 VIMAVESLDELDLRQFE-----GDLLLLESTVLDSDLDQRLEGLRRDGVQVPVLILYRFG 197 + + + + E D+L++ L +D +R+ L ++++Y F Sbjct: 131 LAGEPKVFENMTAAFTERMNQPADVLIIHLPSLHTDDVERVLALSASTHAENIVVVYAFA 190 Query: 198 SPEMVVRLREAGHRVVRKAVEGIDVEWLCEMIRRMEPAAAQTPGEDEWVPEPRFSESALA 257 + + L G R +R+ ++ V + +R A P E P+ +++ AL Sbjct: 191 AANTIALLERVGVRTIREPLDQPSVSQMLGDFQRKTATTAAQPDMREPAPQRHYTDEALM 250 Query: 258 SVSDQSDRMQCECPRHLAELLTALAGFERYSRQCEDDTTEEAELHRALCIAAGQARLPLE 317 +++ S + CECP+HLA ++ L+ FE+YS C T +A LH L +G+AR E Sbjct: 251 AMAHASTTIACECPKHLANIIMQLSAFEQYSVSCASRTPADALLHVYLANISGRARAMFE 310 Query: 318 EALQRLAR 325 AL RL R Sbjct: 311 HALLRLER 318 >gb|EGD05984.1| MerR family transcriptional regulator [Burkholderia sp. TJI49] Length = 323 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 157/308 (50%), Gaps = 12/308 (3%) Query: 26 RPGAVARQLGMAVETLRAWEHRYGITSSQHSGGGQRLYSQEDMQRLVWIKTLVDAGHRIG 85 R G AR M TLR WE RYG+ + + GQRLYS +D+QR+ +KTLV+ GH IG Sbjct: 14 RSGEAARLARMPAATLRIWERRYGVVAPPKTPSGQRLYSDDDVQRIRLLKTLVNQGHAIG 73 Query: 86 KLATLSPRDLQALAQSLPAEGSGSHERQAGPATRLALVGPWIATKAVGQALAHRQLSVIM 145 +A+LS +L+AL+ + HE A AL P A + +G +A R Sbjct: 74 SIASLSREELEALSLT-NTRDPVFHEASVSLAVVGALSIPESAIERMGIRIAAR------ 126 Query: 146 AVESLDELDLRQFEG-DLLLLESTVLDSDLDQRLEGLRRDGVQVPVLILYRFGSPEMVVR 204 ++SLD+ D L+ +T L D+ +L + + V ++Y FG+ E V Sbjct: 127 -IDSLDDTSAHAGTSVDALIATTTSLHEDVVSQLAAVAQQLNAHAVAVVYGFGTAEAVEL 185 Query: 205 LREAGHRVVRKAVEGIDVEWLCEMIRRMEPAAAQTPGEDE--WV-PEPRFSESALASVSD 261 R +G + R + + + + + Q+ D W+ RF E+ LAS+S Sbjct: 186 ARLSGFELFRSTEGQTNPISIISKLAQAVVKSRQSNDADRGLWLRTRRRFDEATLASLSG 245 Query: 262 QSDRMQCECPRHLAELLTALAGFERYSRQCEDDTTEEAELHRALCIAAGQARLPLEEALQ 321 S ++CECPRHL+EL+ L+ FERYS +C + +A LHR L AA +A LE AL Sbjct: 246 LSTTVKCECPRHLSELIMQLSAFERYSDECVSRSPADALLHRHLGDAANRAAELLETALA 305 Query: 322 RLARVKGI 329 + R +G+ Sbjct: 306 VILREEGL 313