BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1154.p (575 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbasp... 674 0.0 ref|YP_003777912.1| methyl-accepting chemotaxis transducer trans... 549 e-154 ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthin... 437 e-120 ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthin... 429 e-118 gb|AAK83219.1|AF338038_2 putative methyl-accepting chemotaxis pr... 408 e-111 >ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ62877.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 674 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 455/575 (79%), Positives = 500/575 (86%) Query: 1 MKITDMKISVRLGACFAALIAVMCLIAGVGVKNLWSVSDATSEIVNDRYVKVALGAQMSD 60 MKI+DMKISVRLGACFAALI VMC+IAGVGVKNL VSDAT EIVNDRYVKVALG Q++D Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 KINTAARSLRNAILARNPEEAKKYLDRVATNTKDVGEMLVRMEKLINTPRGKELIGALNQ 120 K+NT ARSLRNAI+ARNPEE KKYLDR+ T T V E L MEK NTPRG EL+ AL Q Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 SRDEYSKHRAKVVELIQQQKKDEATAYLFDQTIPAQDKYFAALKNMTEFQVSLMDKAVER 180 +R +YSK R KVV+LI QQK+DEATA+LFD+TIP QDKYFAA+K M FQ SLMDK+ ER Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 ANDASSNAVNIMLLLSAAAIVLSALCAWLITRSITRPLNQAVQVATAVAAGDLTVQIDNS 240 A+ ASS+A+NIML+LS A++LSALCA LITRSITRPLN+AVQVATAVAAGDLTVQI+ + Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 SKDETGALLASLKAMNDNLHRIVTEVRQGSDTINTASGEIATGNLDLSSRTEQQAGALEE 300 SKDETGALL +LK+MNDNLHRIV EVR G+DTINTAS EIATGNLDLSSRTEQQAGALEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMSQINDASRKIVDI 360 TASAMEELTSTV+QNADNARQANTLAETASQVAIQGGSVV EVVQTM QINDASRKIVDI Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDI 361 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKTLIDAS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIK+LIDAS Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDAS 421 Query: 421 VERVENGSRLVEQAGTTMDEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 480 VERVE+GSRLV QAG TM+EVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT Sbjct: 422 VERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 481 Query: 481 QQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSNHETRRQAPMAAAAKRTVDVTPRTAA 540 QQNAALVE+AAAAAQSLQEQSGRL +TV IF+L N + +P++A +R+V V P Sbjct: 482 QQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPLSAPVQRSVQVAPARPV 541 Query: 541 LPRKPAARPSSAASAPASRPTMQAAAAVDGDWEQF 575 L RKP R S+ A + + + AA DG WEQF Sbjct: 542 LARKPVTRTSAPAKSIPAAQPVAQAALADGQWEQF 576 >ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66004.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 403/597 (67%), Positives = 470/597 (78%), Gaps = 22/597 (3%) Query: 1 MKITDMKISVRLGACFAALIAVMCLIAGVGVKNLWSVSDATSEIVNDRYVKVALGAQMSD 60 MK+ D+KISVRL CFA LI VMCLI GVG+K+L S+S +++ IV DRY K+AL ++ D Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 KINTAARSLRNAILARNPEEAKKYLDRVATNTKDVGEMLVRMEKLINTPRGKELIGALNQ 120 +N AAR+LRNA+L RN EEA +YLDR A N+ E L +MEK+++T RG+EL ++ + Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 SRDEYSKHRAKVVELIQQQKKDEATAYLFDQTIPAQDKYFAALKNMTEFQVSLMDKAVER 180 +R Y+ R K+ ELI+QQKK+EA LF Q IPAQDKYF L FQ SLM+++V Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 181 ANDASSNAVNIMLLLSAAAIVLSALCAWLITRSITRPLNQAVQVATAVAAGDLTVQIDNS 240 D + +A+ +ML LSA AI L + AWL+TRSITRPLN+AV VA+AVAAGDLTVQI + Sbjct: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 241 SKDETGALLASLKAMNDNLHRIVTEVRQGSDTINTASGEIATGNLDLSSRTEQQAGALEE 300 SKDETGALLA+LK+MND+LHRIV+EVRQGSDTINTAS EIATGNLDLSSRTE+QAGALEE Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 Query: 301 TASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMSQINDASRKIVDI 360 TASAMEELTSTVKQNADNARQAN+LA TAS+VA+QGGSVV +VVQTM +INDASRKIVDI Sbjct: 301 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKTLIDAS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEIK LID S Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 Query: 421 VERVENGSRLVEQAGTTMDEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 480 V RV+NGSRLVEQAGTTM EVVASV+RVTDVVAEI+AAS EQSDGIEQIN AI QMD+VT Sbjct: 421 VSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVT 480 Query: 481 QQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSNHET------RRQAPMAAAAKRTVDV 534 QQNAALVEEAAAAAQSLQEQS RL TVS+FKLS+H+T R+ AP AA++ Sbjct: 481 QQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLSSHDTPHAAAPRKPAPAQAASRPAAAA 540 Query: 535 TPRTA----------------ALPRKPAARPSSAASAPASRPTMQAAAAVDGDWEQF 575 T RTA P A PS A+ +++ +A AA DGDWEQF Sbjct: 541 TVRTAPSKPAAVLASSASPASPASTTPKALPSKPAAPASAKAGSKAMAADDGDWEQF 597 >ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89943.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 316/574 (55%), Positives = 405/574 (70%), Gaps = 9/574 (1%) Query: 3 ITDMKISVRLGACFAALIAVMCLIAGVGVKNLWSVSDATSEIVNDRYVKVALGAQMSDKI 62 + ++KI RL F +++AV+ ++A + L + A + NDRY K + D + Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 63 NTAARSLRNAILARNPEEAKKYLDRVATNTKDVGEMLVRMEKLINTPRGKELIGALNQSR 122 N AR++RNA+L + + K LD + + + E L ++++ I + +G+ I AL +R Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDAR 120 Query: 123 DEYSKHRAKVVELIQQQKKDEATAYLFDQTIPAQDKYFAALKNMTEFQVSLMDKAVERAN 182 ++ + K V L+ Q + EA LF + PAQ +Y L + EFQ +LM KA E A+ Sbjct: 121 GRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAH 180 Query: 183 DASSNAVNIMLLLSAAAIVLSALCAWLITRSITRPLNQAVQVATAVAAGDLTVQIDNSSK 242 + S+NA ++ +LS A+++SA +L TRSITRPL+QAV +A VA GDLT I +SK Sbjct: 181 EVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSK 240 Query: 243 DETGALLASLKAMNDNLHRIVTEVRQGSDTINTASGEIATGNLDLSSRTEQQAGALEETA 302 DETG LL +L+ MN+ L RIVT+VR G+DTI TAS +IATGNLDLSSRTE+QA +LEETA Sbjct: 241 DETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETA 300 Query: 303 SAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMSQINDASRKIVDIIS 362 S+MEELTSTVKQNADNARQ+N LA TAS+VA++GG+VVS+VV+TM IND++ KIVDII Sbjct: 301 SSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKTLIDASVE 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIKTLID SVE Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVE 420 Query: 423 RVENGSRLVEQAGTTMDEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQ 482 +V NGSRLV AGTTM EVV SV+RVTD++ EITAAS EQ+DGIEQINQA++QMD+VTQQ Sbjct: 421 KVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 483 NAALVEEAAAAAQSLQEQSGRLVETVSIFKLSNHETRRQAPMAAAAKRTVDVTPRTAALP 542 NAALVEEAAAAA+SLQ+Q+ L + VS+FKL + QA AA + V+ Sbjct: 481 NAALVEEAAAAAESLQDQANNLSQVVSVFKLDANAVALQATSRVAAPASRPVS------- 533 Query: 543 RKPAARPSSAASAPASRPTMQAAAAVDGD-WEQF 575 KPA + SA +A A DGD WEQF Sbjct: 534 -KPAQQIRSANVDKQIVRQRASATAGDGDEWEQF 566 >ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89882.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 288/516 (55%), Positives = 375/516 (72%) Query: 3 ITDMKISVRLGACFAALIAVMCLIAGVGVKNLWSVSDATSEIVNDRYVKVALGAQMSDKI 62 + ++KI RL F +++ ++ ++A + + ++DA SE+ DRY K L M D + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 63 NTAARSLRNAILARNPEEAKKYLDRVATNTKDVGEMLVRMEKLINTPRGKELIGALNQSR 122 N AR++RNA+L + L ++ T + LV +EK + + RG++ I L R Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 123 DEYSKHRAKVVELIQQQKKDEATAYLFDQTIPAQDKYFAALKNMTEFQVSLMDKAVERAN 182 ++ + ++L KDEA A LF + PAQ Y A++ + ++Q LM K+ AN Sbjct: 121 SKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEAN 180 Query: 183 DASSNAVNIMLLLSAAAIVLSALCAWLITRSITRPLNQAVQVATAVAAGDLTVQIDNSSK 242 +S ++ + S A++++A+ A L TRSITRPL+QAV +A VA GDLT I SK Sbjct: 181 AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESK 240 Query: 243 DETGALLASLKAMNDNLHRIVTEVRQGSDTINTASGEIATGNLDLSSRTEQQAGALEETA 302 DETG LL +LK MN+ L +IVT+VR G+DTI +AS +IATGNLDLSSRTEQQA +LEETA Sbjct: 241 DETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETA 300 Query: 303 SAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMSQINDASRKIVDIIS 362 S+MEELTSTVKQNA+NARQ+N LA +AS+VA++GG+VVS+VV TM +IND+++KIVDII Sbjct: 301 SSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKTLIDASVE 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEIK LI SV+ Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVD 420 Query: 423 RVENGSRLVEQAGTTMDEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQ 482 +V GSRLV+ AG TM EVV SVKRVTD+++EITAAS EQ+DGIEQINQA++QMD+VTQQ Sbjct: 421 KVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 483 NAALVEEAAAAAQSLQEQSGRLVETVSIFKLSNHET 518 NAALVEEAAAAA+SLQ Q+ L + V +FKL H T Sbjct: 481 NAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGT 516 >gb|AAK83219.1|AF338038_2 putative methyl-accepting chemotaxis protein I [Rahnella aquatilis] Length = 554 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 279/528 (52%), Positives = 369/528 (69%), Gaps = 1/528 (0%) Query: 3 ITDMKISVRLGACFAALIAVMCLIAGVGVKNLWSVSDATSEIVNDRYVKVALGAQMSDKI 62 I +M++ RLGA F+ +I ++ +++ V + S++ + +I++DRYVKV L + D + Sbjct: 5 INNMRVGARLGAAFSLVILLLIIVSVTAVTKISSINSSIEQIISDRYVKVRLAFDVRDGV 64 Query: 63 NTAARSLRNAIL-ARNPEEAKKYLDRVATNTKDVGEMLVRMEKLINTPRGKELIGALNQS 121 N + LR ++ +NPE+ K ++ + K + ++ + T GK+ I AL + Sbjct: 65 NDQIKYLRGIVIDTKNPEQNNKRYLQLDDSVKQTNLAMDKIAAIQTTVVGKQKIKALQDA 124 Query: 122 RDEYSKHRAKVVELIQQQKKDEATAYLFDQTIPAQDKYFAALKNMTEFQVSLMDKAVERA 181 D + + ++V L + D AT ++ + +Q+ Y Q + ++A Sbjct: 125 SDIFEAAKEQLVALARAGDMDGATEFVLRKLTTSQNAYLDLASAFANSQDQQLQAEGKKA 184 Query: 182 NDASSNAVNIMLLLSAAAIVLSALCAWLITRSITRPLNQAVQVATAVAAGDLTVQIDNSS 241 NA+ + L+ S AI+++A + +TRSITRPL+ AV+VA VAAGDLT QI +S Sbjct: 185 IADGHNAIQLTLIFSVLAILVAAALGFFLTRSITRPLHTAVKVAENVAAGDLTTQIQVTS 244 Query: 242 KDETGALLASLKAMNDNLHRIVTEVRQGSDTINTASGEIATGNLDLSSRTEQQAGALEET 301 DETG L+ LK MN+NL +IVTEVR G++ I++ASGEIA GNLDLSSRTEQQA +LEET Sbjct: 245 GDETGQLMQGLKNMNENLLKIVTEVRAGTNAIHSASGEIAAGNLDLSSRTEQQASSLEET 304 Query: 302 ASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMSQINDASRKIVDII 361 ASAME++T+TVKQNADNARQAN LA AS+VA+QGG VV EVV TM IN +SRKIVDII Sbjct: 305 ASAMEQMTATVKQNADNARQANQLAAQASRVAVQGGEVVGEVVNTMEGINASSRKIVDII 364 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKTLIDASV 421 +VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK LID SV Sbjct: 365 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVLIDDSV 424 Query: 422 ERVENGSRLVEQAGTTMDEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQ 481 +V+NG++LV +AG+TM EVV+SVK VTD+V EI AS EQS GIE+IN+AI QMDEVTQ Sbjct: 425 AKVDNGTQLVAKAGSTMAEVVSSVKSVTDIVGEIAIASNEQSTGIEEINKAITQMDEVTQ 484 Query: 482 QNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSNHETRRQAPMAAAAK 529 QNAALV+EA++AA SL EQ+ RL + +SIFK+S AA AK Sbjct: 485 QNAALVQEASSAAYSLNEQAERLSQAISIFKVSAGSATAAVRKAAHAK 532