BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1151.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004487690.1| diguanylate cyclase [Delftia sp. Cs1-4] >gi|... 75 1e-11 gb|EGH68036.1| diguanylate cyclase [Pseudomonas syringae pv. act... 72 6e-11 gb|EGH12700.1| diguanylate cyclase [Pseudomonas syringae pv. mor... 72 9e-11 ref|YP_348027.1| diguanylate cyclase [Pseudomonas fluorescens Pf... 69 9e-10 ref|YP_608285.1| diguanylate cyclase [Pseudomonas entomophila L4... 66 4e-09 >ref|YP_004487690.1| diguanylate cyclase [Delftia sp. Cs1-4] gb|AEF89335.1| diguanylate cyclase [Delftia sp. Cs1-4] Length = 533 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 62/215 (28%), Positives = 113/215 (52%), Gaps = 11/215 (5%) Query: 2 PLKRLNNKVRITSLVLAILGSALFGYALLNGSLSSREAAIKSGETATLNLATGLATQVNL 61 P+KR R+ + +LA++ ++ A + +++R+ + +T+ NLA L T Sbjct: 23 PVKR---DARLVAWLLAVVFVSV-SAATVWQLVAARQRTLAEVDTSNRNLAQTLNTYAEG 78 Query: 62 SFRAADLLIQEIAGLEGSRSLSPAELQGLVQDLLTRQSQLFPELDSLLVIDEQGHTRQRW 121 + +L+ IA SP L+ ++ L+ RQ L +L+ LL++D QGH W Sbjct: 79 VITQSSMLLLGIAERLEVDGTSPVLLERVLY-LVNRQEHLLNQLNELLIVDAQGH----W 133 Query: 122 PAHAEPAGLSGMEPAMAMARGERRAEDKSGGLQIGTPVISSVTGRWIIPVTRQRL-RQGK 180 ++ A G E + R +D S G+ IG P+ S TG W+I ++R+ +G+ Sbjct: 134 LMSSKGAFPEGSESSDRDYFTHHR-DDASSGIYIGPPIRSRSTGEWVITISRRYTDAEGQ 192 Query: 181 PAGVIRVGVSLDHFMRLFNELNIGKQGSIWLGGGG 215 AG + V + +++F+RLF +++IG++G+I L G Sbjct: 193 FAGAVVVALGVENFLRLFGKIDIGEKGAIALSTPG 227 >gb|EGH68036.1| diguanylate cyclase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 501 Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 105/208 (50%), Gaps = 14/208 (6%) Query: 6 LNNKVRITSLVLAILGSALFGYALLNGSLSSREAAIKSGETATLNLATGLATQVNLSFRA 65 + R+ ++L ++G +L +L L+SR+ A+++ LNL L T R Sbjct: 1 MKRDTRLVVILLTMIGVSLASLTVLK-VLTSRDRALEAINVHGLNLTQALGTYSESIVRQ 59 Query: 66 ADLLIQEIAGLEGSRSLSPAELQGLVQDLLTRQSQLFPELDSLLVIDEQGHTRQRWPAHA 125 + L++ I + PA++Q L L+ RQ+ + P+L + + D +G RW + Sbjct: 60 SSLILLGIVERLEAEGSGPAQIQRL-SALVKRQNPMMPQLSGITIYDNKG----RWLMSS 114 Query: 126 E---PAGLSGMEPAMAMARGERRAEDKSGGLQIGTPVISSVTGRWIIPVT-RQRLRQGKP 181 PAG + + A + +D S + IG P+ S W+I V+ R QG+ Sbjct: 115 SRPIPAGSNSSDRAYFI----HHRDDPSHEIFIGPPIQSRSNLEWVITVSMRFNNAQGEF 170 Query: 182 AGVIRVGVSLDHFMRLFNELNIGKQGSI 209 AGV+ V + +++F+RLF ++++G+ G+I Sbjct: 171 AGVVSVTLGIENFLRLFGKIDVGQDGAI 198 >gb|EGH12700.1| diguanylate cyclase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 501 Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 105/208 (50%), Gaps = 14/208 (6%) Query: 6 LNNKVRITSLVLAILGSALFGYALLNGSLSSREAAIKSGETATLNLATGLATQVNLSFRA 65 + R+ ++L ++G +L +L L+SR+ A+++ LNL L T R Sbjct: 1 MKRDTRLVVILLTMIGVSLASLTVLK-VLTSRDRALEAINVHGLNLTQALGTYSESIVRQ 59 Query: 66 ADLLIQEIAGLEGSRSLSPAELQGLVQDLLTRQSQLFPELDSLLVIDEQGHTRQRWPAHA 125 + L++ I + PA++Q L L+ RQ+ + P+L + + D +G RW + Sbjct: 60 SSLILLGIVERLEAEGSGPAQIQRL-SALVKRQNPMMPQLSGITIYDNKG----RWLMSS 114 Query: 126 E---PAGLSGMEPAMAMARGERRAEDKSGGLQIGTPVISSVTGRWIIPVT-RQRLRQGKP 181 PAG + + A + +D S + IG P+ S W+I V+ R QG+ Sbjct: 115 SRPIPAGSNSSDRAYFI----HHRDDPSHEIFIGPPIQSRSNLEWVITVSMRFNNAQGEF 170 Query: 182 AGVIRVGVSLDHFMRLFNELNIGKQGSI 209 AGV+ V + +++F+RLF ++++G+ G+I Sbjct: 171 AGVVSVTLGIENFLRLFGKIDVGQDGAI 198 >ref|YP_348027.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gb|ABA74038.1| putative GGDEF domain protein [Pseudomonas fluorescens Pf0-1] Length = 503 Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 19/185 (10%) Query: 34 LSSREAAIKSGETATLNLATGLATQVNLSFRAADLLIQEIAGLEGSRSLSPAELQGLVQD 93 L+SRE A++ + LNL L T R + L+ + + P ++Q + Sbjct: 28 LASRERALEEVDVHGLNLTQALVTYSEGIVRQSSALLLGLVERLETEGSGPVQIQ-RISS 86 Query: 94 LLTRQSQLFPELDSLLVIDEQGHTRQRWPAHAEPAGLSGMEPAMAMARGERRA------E 147 L+ RQ L P+L + + D QG RW +S P A A RA + Sbjct: 87 LIDRQEPLMPQLSGITIYDSQG----RWL-------MSSNRPIPAGANSSDRAYFIHHRD 135 Query: 148 DKSGGLQIGTPVISSVTGRWIIPVTRQ-RLRQGKPAGVIRVGVSLDHFMRLFNELNIGKQ 206 D S IG P+ S W+I V+R+ +G+ AGV+ V + +++F+RLF ++++G++ Sbjct: 136 DPSPETFIGPPIQSRTNQEWVITVSRRFNDARGEFAGVVAVTLGIENFLRLFGKIDVGQE 195 Query: 207 GSIWL 211 G+I L Sbjct: 196 GAIGL 200 >ref|YP_608285.1| diguanylate cyclase [Pseudomonas entomophila L48] emb|CAK15487.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas entomophila L48] Length = 519 Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 19/185 (10%) Query: 34 LSSREAAIKSGETATLNLATGLATQVNLSFRAADLLIQEIAGLEGSRSLSPAELQGLVQD 93 ++SR+ A++ +T +LNL LAT R + LL+ + + PA+++ L Q Sbjct: 28 MASRKQALEDIDTHSLNLTQALATYSEGIVRQSSLLLLGLVERLETEGSGPAQIERLTQ- 86 Query: 94 LLTRQSQLFPELDSLLVIDEQGHTRQRWPAHAEPAGLSGMEPAMAMARGERRA------E 147 L++RQ L P+L + V GH W +S P A A RA + Sbjct: 87 LVSRQQPLMPQLSGVTVYASDGH----WL-------MSSNRPIPAGANSSDRAYFIHHRD 135 Query: 148 DKSGGLQIGTPVISSVTGRWIIPVTRQ-RLRQGKPAGVIRVGVSLDHFMRLFNELNIGKQ 206 D S IG P+ S W++ V+R+ QG+ AGV+ V + +++F+RLF ++++G+ Sbjct: 136 DPSREPFIGPPIRSRANQEWVVTVSRRFNGPQGEFAGVVAVTLGIENFLRLFGKIDVGQD 195 Query: 207 GSIWL 211 G+I L Sbjct: 196 GAIGL 200