BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1150.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S1... 239 3e-61 ref|YP_004752514.1| putative GGDEF domain-containing protein [Co... 224 2e-56 ref|YP_001479297.1| diguanylate cyclase [Serratia proteamaculans... 213 3e-53 ref|YP_002946199.1| diguanylate cyclase [Variovorax paradoxus S1... 206 6e-51 ref|YP_004234327.1| diguanylate cyclase [Acidovorax avenae subsp... 204 2e-50 >ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S110] gb|ACS22281.1| diguanylate cyclase [Variovorax paradoxus S110] Length = 512 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 133/293 (45%), Positives = 187/293 (63%), Gaps = 3/293 (1%) Query: 1 MLLRRPYGSEFLGKSMADLPLYRDHAQQRQSGWAVIQSAQDGVLRLNYFTRVPDYPLFVT 60 M+ RRPY + +G++M + L+R +A G A I+SAQDGV RLN F R+ +YPLFV+ Sbjct: 210 MMTRRPYSPDMVGRNMLETQLFRSYAAHGPVGTAYIKSAQDGVTRLNSFRRLDNYPLFVS 269 Query: 61 AALAHDEMLADWREAQRAQLLVIVSAALLVGLLTAYLLRVVRMRDRAEEEIEKKNLSLKL 120 AAL+ DE+LA+W +V +L+VG + L+R +++ R E E+ + +L+ Sbjct: 270 AALSKDEILANWWRDTLWHSGGVVLLSLIVGFIGWRLVRQFQLQTRTEAELRQARDALET 329 Query: 121 LTENLRAQAMLDGMTGIPNRRYLDEQLQLAMRNASRSKSALSLVMFDVDFFKKYNDLYGH 180 L + L AM DG+TG+ NRR D L A+R+ S L+L+M DVD FK+YND+YGH Sbjct: 330 LNKTLNTLAMEDGLTGLANRRQFDVALDSEYSRAARNASTLALIMMDVDCFKQYNDIYGH 389 Query: 181 IQGDYCLQDVARTL-RGMQRRHGDLAARYGGEEFALLLPDTDLDNAHRIAQKVLDGVRTL 239 GD CLQ + RT+ R RR GDLAARYGGEE A+LLP+TD+ A +A+++ VR L Sbjct: 390 AAGDECLQTIGRTIARVASRRPGDLAARYGGEELAVLLPNTDVAGAVMLAERIRSAVREL 449 Query: 240 AIPHQGNAGGVVTISAGVMSCVPRPEM--RIEDLFAGADRALYRAKERGRDRV 290 I H G A G VT+SAGV + P+ + + ++L AD+ALY AK GR+RV Sbjct: 450 KIEHAGTADGFVTLSAGVDALSPQAGIGGQPKELIRSADKALYAAKSGGRNRV 502 >ref|YP_004752514.1| putative GGDEF domain-containing protein [Collimonas fungivorans Ter331] gb|AEK61691.1| putative GGDEF domain protein [Collimonas fungivorans Ter331] Length = 521 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 125/298 (41%), Positives = 187/298 (62%), Gaps = 1/298 (0%) Query: 1 MLLRRPYGSEFLGKSMADLPLYRDHAQQRQSGWAVIQSAQDGVLRLNYFTRVPDYPLFVT 60 ML+RRP + +GK++++ P+YRD+A + G A+++S QDG+ RL + + YPLFVT Sbjct: 224 MLVRRPMMDDTIGKNLSNYPIYRDYASRSAVGTAIMKSDQDGIERLIAYRHLQQYPLFVT 283 Query: 61 AALAHDEMLADWREAQRAQLLVIVSAALLVGLLTAYLLRVVRMRDRAEEEIEKKNLSLKL 120 A + +E+LA+WR L + L +GLL L+ +R+R AE ++ SL++ Sbjct: 284 VARSKNEVLAEWRADTYLHLFGAMLLTLALGLLGWRLIHQIRLRLLAENDLLCVQESLRM 343 Query: 121 LTENLRAQAMLDGMTGIPNRRYLDEQLQLAMRNASRSKSALSLVMFDVDFFKKYNDLYGH 180 L +L A+ D +TG+ NRR D L+ A R++++L+LVM DVD+FK+YND+YGH Sbjct: 344 LNRHLEQLALQDSLTGLANRRQFDNALRDEFSRAMRTENSLALVMIDVDYFKQYNDIYGH 403 Query: 181 IQGDYCLQDVARTLRGMQRRHGDLAARYGGEEFALLLPDTDLDNAHRIAQKVLDGVRTLA 240 + GD CL+ ++ ++ + R GDLAARYGGEE +LLPDT+L A +A+K+ + L Sbjct: 404 LAGDECLRQISEIVKASKNRPGDLAARYGGEELVVLLPDTNLAGAVAVAEKIRVAICNLH 463 Query: 241 IPHQGNAGGVVTISAGVMSCVPRPEMRIE-DLFAGADRALYRAKERGRDRVEDCQLPR 297 I H + G+VT+SAGV + VP + I +L ADRALY AK GR+RV PR Sbjct: 464 IEHPSSTFGLVTVSAGVDAFVPVRDDNIPFELIQAADRALYAAKSAGRNRVCSSADPR 521 >ref|YP_001479297.1| diguanylate cyclase [Serratia proteamaculans 568] gb|ABV42169.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 516 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 119/293 (40%), Positives = 175/293 (59%), Gaps = 5/293 (1%) Query: 1 MLLRRPYGSEFLGKSMADLPLYRDHAQQRQSGWAVIQSAQDGVLRLNYFTRVPDYPLFVT 60 +L RRPY +GK++++ L+R+ + G A I S D V R+ ++RV YPL + Sbjct: 223 ILYRRPYSLAAIGKNISEGVLFREILPHSEFGNATITSRYDKVERIYGYSRVTRYPLVIA 282 Query: 61 AALAHDEMLADWREAQRAQLLVIVSAALLVGLLTA--YLLRVVRMRDRAEEEIEKKNLSL 118 A L+ ++LADWR + L + A LL LL L+R + R E E+ + L Sbjct: 283 AGLSKKDVLADWR--NDSGLFALGGATLLAILLAMGMVLMRQINHSVRTEAELMRTRDQL 340 Query: 119 KLLTENLRAQAMLDGMTGIPNRRYLDEQLQLAMRNASRSKSALSLVMFDVDFFKKYNDLY 178 + L A+LDG+TG+ NRR D L+ + ASR+ +++L+M D+D+FK+YND+Y Sbjct: 341 TSINRTLEELALLDGLTGLANRRQFDIALKNELMRASRNYRSVALLMLDIDYFKQYNDIY 400 Query: 179 GHIQGDYCLQDVARTLRGMQRRHGDLAARYGGEEFALLLPDTDLDNAHRIAQKVLDGVRT 238 GH+ GD CLQ + + L+GM R D+ ARYGGEE A++LPDTD A A++V++ VR Sbjct: 401 GHVAGDQCLQQIGQMLKGMASRSNDIMARYGGEEMAIILPDTDAQGALIFAERVIEAVRE 460 Query: 239 LAIPHQGNAGGVVTISAGVMSCVPRPEMRIEDLFAG-ADRALYRAKERGRDRV 290 L IPH GN GV+TIS G+ + VP F AD ALY+AK +G++R+ Sbjct: 461 LKIPHDGNPHGVITISIGIYAKVPHMYNDTPMSFINQADSALYQAKAQGKNRI 513 >ref|YP_002946199.1| diguanylate cyclase [Variovorax paradoxus S110] gb|ACS20933.1| diguanylate cyclase [Variovorax paradoxus S110] Length = 534 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 129/290 (44%), Positives = 171/290 (58%), Gaps = 1/290 (0%) Query: 1 MLLRRPYGSEFLGKSMADLPLYRDHAQQRQSGWAVIQSAQDGVLRLNYFTRVPDYPLFVT 60 +LLRRP+ LG+ D PL + R SG +SA DGV R+ F + +YPLFVT Sbjct: 242 LLLRRPFREADLGRRSTDTPLQQRFRAAR-SGTVEGRSAIDGVTRIISFEHLLNYPLFVT 300 Query: 61 AALAHDEMLADWREAQRAQLLVIVSAALLVGLLTAYLLRVVRMRDRAEEEIEKKNLSLKL 120 A+ DE L +W+ A Q +V L+VG+ +L+R +R R AE ++ +L Sbjct: 301 VAVGKDEALQEWKSASIYQTAWVVLLCLVVGVSGRHLIRSMRRRLVAELQLRSARDALTE 360 Query: 121 LTENLRAQAMLDGMTGIPNRRYLDEQLQLAMRNASRSKSALSLVMFDVDFFKKYNDLYGH 180 E L A DG+TG+ NRRY D +L L + A S++AL++VM DVD FKKYNDLYGH Sbjct: 361 ANERLEHLAQEDGLTGLANRRYFDARLALNFQQALASQTALAVVMVDVDEFKKYNDLYGH 420 Query: 181 IQGDYCLQDVARTLRGMQRRHGDLAARYGGEEFALLLPDTDLDNAHRIAQKVLDGVRTLA 240 ++GD CL+ V++ LR R DL ARYGGEE LLLP TD A +AQ+ V L Sbjct: 421 LEGDDCLRRVSQALRSAVWRSSDLVARYGGEEMVLLLPATDAAGALEVAQRARLAVADLQ 480 Query: 241 IPHQGNAGGVVTISAGVMSCVPRPEMRIEDLFAGADRALYRAKERGRDRV 290 IPH +A G V++S GV S VP+P +L AD ALY AK+ GR+ V Sbjct: 481 IPHAASALGTVSVSLGVASGVPQPGSTPFELLRAADEALYLAKQEGRNTV 530 >ref|YP_004234327.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45760.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 535 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 122/299 (40%), Positives = 171/299 (57%), Gaps = 4/299 (1%) Query: 1 MLLRRPYGSEFLGKSMADLPLYRDHAQQRQSGWAVIQSAQDGVLRLNYFTRVPDYPLFVT 60 +L R P+ E LG+++ L Q +SG A++ S DGV+RL F + PL V Sbjct: 226 VLTREPFRVEDLGRTLPASQL--QQFLQSRSGLAIMPSPIDGVVRLVSFEHARNVPLAVA 283 Query: 61 AALAHDEMLADWREAQRAQLLVIVSAALLVGLLTAYLLRVVRMRDRAEEEIEKKNLSLKL 120 AL+ DE+ +WR A Q+ I+ ++G AYL+R V++R A+ + + +L Sbjct: 284 VALSEDEIFTEWRRATAVQIAGILLLLAVIGPAGAYLIRTVKLRRDADLRLRTTHEALVE 343 Query: 121 LTENLRAQAMLDGMTGIPNRRYLDEQLQLAMRNASRSKSALSLVMFDVDFFKKYNDLYGH 180 + A DG+TG+ NRR D +++ M R + +S+VMFDVDFFK+YND GH Sbjct: 344 AHARMEHMAEHDGLTGVHNRRAYDRRIREVMAQCRRYQRPVSVVMFDVDFFKRYNDALGH 403 Query: 181 IQGDYCLQDVARTLRGMQRRHGDLAARYGGEEFALLLPDTDLDNAHRIAQKVLDGVRTLA 240 +GD CL+ VA L G RR GD ARYGGEEFA++LP+TD A ++AQ V L Sbjct: 404 PEGDECLRRVANALAGSIRRPGDFIARYGGEEFAIVLPETDAPGALQVAQAARSAVIALR 463 Query: 241 IPHQGNAGGVVTISAGVMSCVPRPEMRI-EDLFAGADRALYRAKERGRDRVEDCQLPRP 298 +PH G+ G VT+S GV +C P E E+L AD ALY AK++GRDR+ P P Sbjct: 464 LPHPGSPFGHVTVSGGV-ACSPGQEPETPEELLGRADTALYEAKQQGRDRIVVANGPPP 521