BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1149.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776920.1| RNA polymerase sigma-70 factor, ECF subfamil... 287 4e-76 ref|YP_002799431.1| ECF subfamily RNA polymerase sigma factor [A... 129 1e-28 ref|YP_348855.1| RNA polymerase sigma factor [Pseudomonas fluore... 127 9e-28 gb|AEG71804.1| 3-compartiment signal transduction system, sigma ... 126 1e-27 ref|YP_003748111.1| Regulatory protein (3-compartiment signal tr... 125 4e-27 >ref|YP_003776920.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65012.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 158/177 (89%), Positives = 165/177 (93%), Gaps = 1/177 (0%) Query: 1 MSSHLMSDPLGAMNQIEAMFIEHHGWLRTRLRRSVGDAFAAEDVAAETFTQLLTSPP-QE 59 MSS+ +SD AM++IEA+FIEHHGWLRTRLRRSVGDAF AEDVAAETFTQLL SPP QE Sbjct: 1 MSSYPISDHPPAMSRIEAIFIEHHGWLRTRLRRSVGDAFTAEDVAAETFTQLLHSPPPQE 60 Query: 60 VREPRALLTTISRRIVYELWRRRDLEAACLQALAHANGEAQVISPEDQLQLLQALRAMDQ 119 VREPRALLTTISRRIVYELWRRRDLE ACLQALAH +G+ Q ISPEDQLQLLQALRAMDQ Sbjct: 61 VREPRALLTTISRRIVYELWRRRDLEEACLQALAHVSGDVQAISPEDQLQLLQALRAMDQ 120 Query: 120 ALAGLSAKECAAFLLYKLDGLTYQAIGEQLRITPSVARRYVAKGLLQCYKAAGFAPL 176 ALAGLSAKECAAFLLYKLDGLTYQAIG QLRITPSVARRYVAKGLLQCYKAAGFAPL Sbjct: 121 ALAGLSAKECAAFLLYKLDGLTYQAIGAQLRITPSVARRYVAKGLLQCYKAAGFAPL 177 >ref|YP_002799431.1| ECF subfamily RNA polymerase sigma factor [Azotobacter vinelandii DJ] gb|ACO78456.1| RNA polymerase sigma factor, ECF subfamily [Azotobacter vinelandii DJ] Length = 174 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 80/171 (46%), Positives = 107/171 (62%), Gaps = 2/171 (1%) Query: 1 MSSHLMSDPLGAMNQIEAMFIEHHGWLRTRLRRSVGDAFAAEDVAAETFTQLLT-SPPQE 59 M++ P + + +F EHHGWL RLR +G A A D+A+ETFTQ++ P Sbjct: 1 MTASSQVSPALRLQVLHRLFGEHHGWLFGRLRARLGCAHDAADIASETFTQVVALDDPGA 60 Query: 60 VREPRALLTTISRRIVYELWRRRDLEAACLQALAHANGEAQVISPEDQLQLLQALRAMDQ 119 +REPRALLTTI++R++Y WRRRDLE A L+ LA EA SPE+ + L+AL A+DQ Sbjct: 61 IREPRALLTTIAKRLIYASWRRRDLERAYLEVLAQ-QPEAVQPSPEETVLALEALAAIDQ 119 Query: 120 ALAGLSAKECAAFLLYKLDGLTYQAIGEQLRITPSVARRYVAKGLLQCYKA 170 L GLS K AAFL +L+GL Y I +L ++ + +YV KGL CY A Sbjct: 120 LLDGLSPKARAAFLYSQLEGLNYTEIASRLGVSVTRVHQYVVKGLTTCYLA 170 >ref|YP_348855.1| RNA polymerase sigma factor [Pseudomonas fluorescens Pf0-1] gb|ABA74864.1| putative Sigma-24 (FecI) factor [Pseudomonas fluorescens Pf0-1] Length = 168 Score = 127 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 75/156 (48%), Positives = 109/156 (69%), Gaps = 2/156 (1%) Query: 16 IEAMFIEHHGWLRTRLRRSVGDAFAAEDVAAETFTQLLTSP-PQEVREPRALLTTISRRI 74 I MF + + WL + R++G +A+D+A+ETF ++L P P +REPRALLTTI+RR+ Sbjct: 11 IGQMFQKDYRWLCAAVSRTLGCPHSAQDIASETFLRVLALPDPLAIREPRALLTTIARRL 70 Query: 75 VYELWRRRDLEAACLQALAHANGEAQVISPEDQLQLLQALRAMDQALAGLSAKECAAFLL 134 VYE WRR+DLE A LQ+LA A E SPE++ +++ L A+D+ L GLSAK AAFL Sbjct: 71 VYEGWRRQDLERAYLQSLALAP-EPVHPSPEERELVIETLLAVDRLLNGLSAKAKAAFLY 129 Query: 135 YKLDGLTYQAIGEQLRITPSVARRYVAKGLLQCYKA 170 ++LDGLTY IGE+L ++ S ++Y+ + +CY+A Sbjct: 130 HQLDGLTYSEIGERLGVSTSRVQQYMVEAFKRCYQA 165 >gb|AEG71804.1| 3-compartiment signal transduction system, sigma factor prhi protein [Ralstonia solanacearum Po82] Length = 218 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 71/153 (46%), Positives = 100/153 (65%), Gaps = 2/153 (1%) Query: 20 FIEHHGWLRTRLRRSVGDAFAAEDVAAETFTQLLTSPP-QEVREPRALLTTISRRIVYEL 78 F +H+ WL R+ R G F AED+A+E F QLL P Q +REPRALLTTI++R++Y++ Sbjct: 65 FRQHYAWLAGRMGRKTGCRFGAEDLASEAFAQLLQMPDWQGIREPRALLTTIAQRLLYDI 124 Query: 79 WRRRDLEAACLQALAHANGEAQVISPEDQLQLLQALRAMDQALAGLSAKECAAFLLYKLD 138 WRRRDLE A QA A EA + SPE++ +L+AL +D+ L GL K AFL +LD Sbjct: 125 WRRRDLELA-YQAWAAVQPEATLPSPEERALVLEALATIDRLLDGLPVKARTAFLYSQLD 183 Query: 139 GLTYQAIGEQLRITPSVARRYVAKGLLQCYKAA 171 GLTY I E+L ++ + ++Y+ + + CY A Sbjct: 184 GLTYPEIAERLNVSVRMVQKYMTQAMRLCYLAG 216 >ref|YP_003748111.1| Regulatory protein (3-compartiment signal transduction system, sigma factor prhi transcriptional regulator) [Ralstonia solanacearum CFBP2957] emb|CBJ53719.1| Regulatory protein (3-compartiment signal transduction system, sigma factor prhi transcription regulator protein) [Ralstonia solanacearum CFBP2957] Length = 169 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 73/153 (47%), Positives = 101/153 (66%), Gaps = 2/153 (1%) Query: 20 FIEHHGWLRTRLRRSVGDAFAAEDVAAETFTQLLTSPP-QEVREPRALLTTISRRIVYEL 78 F +H+ WL R+ R G F AED+A+E F QLL P Q VREPRALLTTI++R++Y++ Sbjct: 16 FRQHYAWLAGRMGRKTGCRFGAEDLASEAFAQLLQMPDWQGVREPRALLTTIAQRLLYDI 75 Query: 79 WRRRDLEAACLQALAHANGEAQVISPEDQLQLLQALRAMDQALAGLSAKECAAFLLYKLD 138 WRRRDLE A QA A A EA + SPE++ +L+AL +D+ L GL K AFL +LD Sbjct: 76 WRRRDLELA-YQAWAAAQPEATLPSPEERALVLEALATIDRLLDGLPVKARTAFLYSQLD 134 Query: 139 GLTYQAIGEQLRITPSVARRYVAKGLLQCYKAA 171 GLTY I E+L ++ + ++Y+ + + CY A Sbjct: 135 GLTYPEIAERLNVSVRMVQKYMTQAMRLCYLAG 167