BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1146.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776923.1| hypothetical protein Hsero_3536 [Herbaspiril...   130   6e-29
ref|YP_004754504.1| hypothetical protein CFU_3857 [Collimonas fu...   102   2e-20
ref|YP_003613262.1| hypothetical protein ECL_02772 [Enterobacter...    65   2e-09
ref|ZP_08496688.1| hypothetical protein HMPREF9086_0947 [Enterob...    63   1e-08
ref|ZP_06638749.1| conserved hypothetical protein [Serratia odor...    62   3e-08

>ref|YP_003776923.1| hypothetical protein Hsero_3536 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65015.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 69/99 (69%), Positives = 79/99 (79%)

Query: 1   MIRMVRAIGAGHGCSRVLLVSNGNRVAGRRGKGGRVHADYDAFWQELGAARRSDGDYELP 60
           MIR+VRA+G  HGC+RV+LVSN +RVA    +   VHADYDAFWQELGAARRSDGDYELP
Sbjct: 223 MIRLVRALGVAHGCARVVLVSNAHRVARHHCRREHVHADYDAFWQELGAARRSDGDYELP 282

Query: 61  CEETAPDLQSLPSRKRAEARQRLALTQAVTQQVRGALVR 99
           C+E   D+ +LPSRKRAEARQRLALTQ     +R ALVR
Sbjct: 283 CDEAVSDINALPSRKRAEARQRLALTQQAALAMRCALVR 321


>ref|YP_004754504.1| hypothetical protein CFU_3857 [Collimonas fungivorans Ter331]
 gb|AEK63681.1| hypothetical protein CFU_3857 [Collimonas fungivorans Ter331]
          Length = 508

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 67/92 (72%), Gaps = 1/92 (1%)

Query: 1   MIRMVRAIGAGHGCSRVLLVSNGNRVAGRRGKGGRVHADYDAFWQELGAARRSDGDYELP 60
           M+R+VR IG  +GC +++LV N NRV   + + G+V ADYD FW+E+GA RR DG+Y+L 
Sbjct: 405 MLRLVREIGRAYGCKKLILVGNRNRVLFHQIRTGKVLADYDDFWEEIGAIRRPDGEYQLC 464

Query: 61  CEET-APDLQSLPSRKRAEARQRLALTQAVTQ 91
           CE   AP+LQ +PS KR+EAR+R+ LT+   Q
Sbjct: 465 CEVIPAPNLQEIPSHKRSEARKRIELTERAVQ 496


>ref|YP_003613262.1| hypothetical protein ECL_02772 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gb|ADF62313.1| hypothetical protein ECL_02772 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 318

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 4/103 (3%)

Query: 1   MIRMVRAIGAGHGCSRVLLVSNGNRVAG----RRGKGGRVHADYDAFWQELGAARRSDGD 56
           ++  V  +G+     +++ VSN   +      R+ K G++ ADYD+FW  LG  ++ +G+
Sbjct: 216 LVEAVMTLGSAFPVEQIVAVSNATHIYRSWRYRKKKEGKLLADYDSFWISLGGHKQDNGN 275

Query: 57  YELPCEETAPDLQSLPSRKRAEARQRLALTQAVTQQVRGALVR 99
           +ELP       ++ + S+KRAE R+R  L  ++T+QV  A  R
Sbjct: 276 FELPLAMPRKSMEEIASKKRAEYRRRYELLDSLTEQVTQATRR 318


>ref|ZP_08496688.1| hypothetical protein HMPREF9086_0947 [Enterobacter hormaechei ATCC
           49162]
 gb|EGK62876.1| hypothetical protein HMPREF9086_0947 [Enterobacter hormaechei ATCC
           49162]
          Length = 318

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 4/103 (3%)

Query: 1   MIRMVRAIGAGHGCSRVLLVSNGNRVAG----RRGKGGRVHADYDAFWQELGAARRSDGD 56
           ++  V  +       ++L VSN   +      R+ K G++ ADYD+FW+ LG  ++ +G+
Sbjct: 216 LVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGEQQDNGN 275

Query: 57  YELPCEETAPDLQSLPSRKRAEARQRLALTQAVTQQVRGALVR 99
           + LP       ++ + S+KR+E R+R AL  ++ QQV  A  R
Sbjct: 276 FALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQVSQATAR 318


>ref|ZP_06638749.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gb|EFE96307.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 223

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%)

Query: 30  RGKGGRVHADYDAFWQELGAARRSDGDYELPCEETAPDLQSLPSRKRAEARQRLALTQAV 89
           + +G  +HADYD+FW+  G    S G Y +P       L  +PS+KRA  R+R  LT A+
Sbjct: 151 KNRGKHLHADYDSFWEMSGGNIDSHGYYSIPINIIRKRLGDVPSKKRAVYRRRYELTDAI 210

Query: 90  TQQVRGALVR 99
           ++Q R AL R
Sbjct: 211 SEQTRQALTR 220