BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1144.p (420 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776925.1| flagellar hook protein [Herbaspirillum serop... 619 e-175 ref|YP_003775444.1| flagellar basal-body rod protein FlgE [Herba... 478 e-132 ref|YP_001353111.1| flagellar hook protein FlgE [Janthinobacteri... 335 1e-89 ref|YP_315392.1| flagellar hook protein FlgE [Thiobacillus denit... 333 3e-89 ref|ZP_08272755.1| Flagellar hook protein flgE [Oxalobacteraceae... 330 3e-88 >ref|YP_003776925.1| flagellar hook protein [Herbaspirillum seropedicae SmR1] gb|ADJ65017.1| flagellar hook protein [Herbaspirillum seropedicae SmR1] Length = 420 Score = 619 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 371/420 (88%), Positives = 401/420 (95%) Query: 1 MSFQQGLSGLQGASKHLEVVGNNVANASTVGFKQGQVQFADAYANSMNRSGNSPVGIGVT 60 MSFQQGLSGL GASKHL+V+GNNVANASTVGFKQGQVQFADAYANSMNRSGNSPVGIGVT Sbjct: 1 MSFQQGLSGLHGASKHLDVIGNNVANASTVGFKQGQVQFADAYANSMNRSGNSPVGIGVT 60 Query: 61 LANVSQAFTQGNIATTNNALDVAINGDGFFRMAANLNDQSPRYGRNGQFQLNKDGYLINP 120 +ANVSQAFTQGNIATTNNALDVAINGDGFFRMAA+L DQSPRYGRNGQFQLNKDGYLINP Sbjct: 61 VANVSQAFTQGNIATTNNALDVAINGDGFFRMAASLTDQSPRYGRNGQFQLNKDGYLINP 120 Query: 121 SMNGAYLTGYPAGAAGGDPVPLKIDTATLPATATSRITTKINLDSRKSVPTISPFDPANP 180 SMNGAYLTGYPAG GGDPVPLKIDTATLPATAT+R++TK+NLDSRKSVPT+SPFDPANP Sbjct: 121 SMNGAYLTGYPAGTNGGDPVPLKIDTATLPATATTRVSTKVNLDSRKSVPTVSPFDPANP 180 Query: 181 NSYNNSTGATVYDSLGNPYSLQTYYVKSPPTGSPPATTWSVYGTLDGKLINAAPPATGPQ 240 NSY+NSTGATVYDSLGNPYSLQT+YVK TG+PP+TTWSVY TLDGK I APPATGPQ Sbjct: 181 NSYSNSTGATVYDSLGNPYSLQTFYVKGAATGTPPSTTWSVYATLDGKTIINAPPATGPQ 240 Query: 241 LLGTLRFDATGALTASTGMTVDLSSMVKGGASFPTPIALNYAGSTQTGSAFANLAQSQDG 300 LLGTLRFDATGALTASTGM+++LS++ KGGA+FP PIAL YAGSTQTGSAFANLAQSQDG Sbjct: 241 LLGTLRFDATGALTASTGMSLNLSTLAKGGATFPGPIALGYAGSTQTGSAFANLAQSQDG 300 Query: 301 SPPGTLSSFSIGKDGSLVGSYSNQQTKVLGQIVLVNFANPNGLQPLGNNLYQATAAAGSP 360 PPGTLSSFSIGKDGS++G+YSNQQT+V+GQIVLVNFANP+GLQP+GNNLYQA+ AAGS Sbjct: 301 MPPGTLSSFSIGKDGSIIGAYSNQQTRVMGQIVLVNFANPHGLQPIGNNLYQASEAAGSA 360 Query: 361 LVGTPTTATFGSLQGRAVEQSNVDLTAELVNMIVAQRVYQANSQSIKVQDTVLQTLISLR 420 LVGTPTT FG+LQGRAVEQSNVDLTAELVNMIVAQRVYQANSQ+IKVQDTVLQTL+SLR Sbjct: 361 LVGTPTTGAFGALQGRAVEQSNVDLTAELVNMIVAQRVYQANSQTIKVQDTVLQTLVSLR 420 >ref|YP_003775444.1| flagellar basal-body rod protein FlgE [Herbaspirillum seropedicae SmR1] gb|ADJ63536.1| flagellar basal-body rod FlgE protein [Herbaspirillum seropedicae SmR1] Length = 432 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 296/432 (68%), Positives = 354/432 (81%), Gaps = 12/432 (2%) Query: 1 MSFQQGLSGLQGASKHLEVVGNNVANASTVGFKQGQVQFADAYANSMNRSGNSPVGIGVT 60 M FQQGLSGL GA+K L+V+GNNVANASTVGFKQ Q QFAD YANSMNRSGNSPVGIGV+ Sbjct: 1 MGFQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQAQFADMYANSMNRSGNSPVGIGVS 60 Query: 61 LANVSQAFTQGNIATTNNALDVAINGDGFFRMAANLNDQSPRYGRNGQFQLNKDGYLINP 120 + V+Q FTQGNI+++NN LD+AINGDGFF+++A+L ++SP YGRNGQFQL+K GY++NP Sbjct: 61 VPAVAQQFTQGNISSSNNPLDIAINGDGFFQLSASLTNKSPMYGRNGQFQLDKSGYIVNP 120 Query: 121 SMNGAYLTGYPAGAAGGDPVPLKIDTATLPATATSRITTKINLDSRKSVPTISPFDPANP 180 SMNGAYL G+ AGA GGDPVPL+IDT+++PAT T+ I+TK+NLDSR SVPT +PF+ A+P Sbjct: 121 SMNGAYLMGWAAGAQGGDPVPLQIDTSSIPATPTTTISTKVNLDSRLSVPTTTPFNAADP 180 Query: 181 NSYNNSTGATVYDSLGNPYSLQTYYVKSPPTGSPPATTWSVYGTLDGKLINAAPPATGPQ 240 SYN+STG +YDSLGNPYS+QTYYVK+ PTG+PP TTW+VY +D +N P Sbjct: 181 TSYNSSTGVDLYDSLGNPYSMQTYYVKAAPTGTPPTTTWTVYAKIDNTTLNNGATPAVPV 240 Query: 241 LLGTLRFDATGALTASTGM------------TVDLSSMVKGGASFPTPIALNYAGSTQTG 288 LGT+ FD+TG +T G T L+++ K G F PI ++Y+GSTQTG Sbjct: 241 ALGTMTFDSTGTMTQINGAAISPTNNTLTISTAQLATVAKAGGVFAAPINISYSGSTQTG 300 Query: 289 SAFANLAQSQDGSPPGTLSSFSIGKDGSLVGSYSNQQTKVLGQIVLVNFANPNGLQPLGN 348 SAF NLAQ Q+G PPG+LSSFS+ KDGS++GSYSNQQTK LG +VLVNFANPNGLQPLGN Sbjct: 301 SAFVNLAQVQNGMPPGSLSSFSVDKDGSIIGSYSNQQTKNLGTVVLVNFANPNGLQPLGN 360 Query: 349 NLYQATAAAGSPLVGTPTTATFGSLQGRAVEQSNVDLTAELVNMIVAQRVYQANSQSIKV 408 NLYQA++AAGSPLVG PTT TFG+LQ RA E SNVDLTAELVNMIVAQRVYQANSQ+IKV Sbjct: 361 NLYQASSAAGSPLVGKPTTGTFGTLQARAKEDSNVDLTAELVNMIVAQRVYQANSQTIKV 420 Query: 409 QDTVLQTLISLR 420 QDTVLQTL+SLR Sbjct: 421 QDTVLQTLVSLR 432 >ref|YP_001353111.1| flagellar hook protein FlgE [Janthinobacterium sp. Marseille] gb|ABR88664.1| FlgE flagellar hook protein [Janthinobacterium sp. Marseille] Length = 416 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 217/427 (50%), Positives = 281/427 (65%), Gaps = 18/427 (4%) Query: 1 MSFQQGLSGLQGASKHLEVVGNNVANASTVGFKQGQVQFADAYANSMNRSGNSPVGIGVT 60 MSFQQGLSGL ASK LE +GNNVAN+ TVGFKQ QVQFAD YA++++ SG + +GIGV Sbjct: 1 MSFQQGLSGLNAASKSLEAIGNNVANSGTVGFKQSQVQFADIYASTLSGSGAAQIGIGVQ 60 Query: 61 LANVSQAFTQGNIATTNNALDVAINGDGFFRMAANLNDQSPRYGRNGQFQLNKDGYLINP 120 +A V+Q F+QGNIA +NN LD+AINGDGFFRM++ S YGRNGQF+L K+GY+ N Sbjct: 61 VARVAQLFSQGNIAVSNNPLDMAINGDGFFRMSSG---GSITYGRNGQFELTKEGYIQNA 117 Query: 121 SMNGAYLTGYPAGAAG----GDPVPLKIDTATLPATATSRITTKINLDSRKSVPTISPFD 176 S GA LTGY A A G G PV L I+ A + AT++ K+ LDSRK V F+ Sbjct: 118 S--GARLTGYMADANGVVQNGAPVELVINKADMGPAATTKYDVKLTLDSRKDVLDPLLFN 175 Query: 177 PANPNSYNNSTGATVYDSLGNPYSLQTYYVKSPPTGSPPATTWSVYGTLDGKLINAAPPA 236 P + ++++ST VYDSLGN + L+T+YVK+ WSV+ T DG I P Sbjct: 176 PDDAATFSDSTSVPVYDSLGNSHILRTFYVKTA------GGEWSVFATNDGVPIGYTLPV 229 Query: 237 TG---PQLLGTLRFDATGALTASTGMTVDLSSMVKGGASFPTPIALNYAGSTQTGSAFAN 293 T P LG + F GAL ++T + + V GA+ P I LN AG+ Q AF Sbjct: 230 TATNPPVPLGVMDFGTGGALVSTTPSPMVAAMAVTTGAATPFNITLNVAGTQQFAQAFGV 289 Query: 294 LAQSQDGSPPGTLSSFSIGKDGSLVGSYSNQQTKVLGQIVLVNFANPNGLQPLGNNLYQA 353 DG PGTL+ F + DGS++G YSN + VLGQ++L +FANPNGLQ +G+N + Sbjct: 290 SKNLPDGYRPGTLTGFDVASDGSIMGRYSNGEVNVLGQVILSSFANPNGLQNIGDNQWVE 349 Query: 354 TAAAGSPLVGTPTTATFGSLQGRAVEQSNVDLTAELVNMIVAQRVYQANSQSIKVQDTVL 413 TA +G PL TP ++ G +Q +E+SNVDLTAELVNMI AQRVYQAN+Q+IK QD ++ Sbjct: 350 TAESGVPLTSTPGSSGLGVVQSARIEESNVDLTAELVNMITAQRVYQANAQTIKTQDQIM 409 Query: 414 QTLISLR 420 QTL++LR Sbjct: 410 QTLVNLR 416 >ref|YP_315392.1| flagellar hook protein FlgE [Thiobacillus denitrificans ATCC 25259] gb|AAZ97587.1| flagellar hook protein FlgE [Thiobacillus denitrificans ATCC 25259] Length = 405 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 235/424 (55%), Positives = 295/424 (69%), Gaps = 23/424 (5%) Query: 1 MSFQQGLSGLQGASKHLEVVGNNVANASTVGFKQGQVQFADAYANSMNRSGNSPVGIGVT 60 MSFQQGLSGL A+K+L+V+GNNV+NASTVGFKQ Q QFAD YANS+ +G S +GIGV Sbjct: 1 MSFQQGLSGLNAAAKNLDVIGNNVSNASTVGFKQSQAQFADVYANSLTGAGGSSIGIGVK 60 Query: 61 LANVSQAFTQGNIATTNNALDVAINGDGFFRMAANLNDQSPRYGRNGQFQLNKDGYLINP 120 +A V+Q FTQGNI +TNN LD+AING GFFRM N Y RNGQFQL+K+GY++NP Sbjct: 61 VAQVAQQFTQGNITSTNNPLDMAINGGGFFRMD---NGGEIAYQRNGQFQLDKNGYIVNP 117 Query: 121 SMNGAYLTGYPAGAAG----GDPVPLKIDTATLPATATSRITTKINLDSRKSVPTISPFD 176 + G LTGY A A+G G P PL I+TA L ATS + +NLDS + + FD Sbjct: 118 T--GGKLTGYTANASGVLSTGAPAPLAINTADLTPQATSEVNAVLNLDSTGTALPAASFD 175 Query: 177 PANPNSYNNSTGATVYDSLGNPYSLQTYYVKSPPTGSPPATTWSVYGTLDGKLINAAPPA 236 +P +Y++ST A+VYDSLGN ++LQTYYVK+ A TW+VY DG I AA Sbjct: 176 MNDPTTYHSSTAASVYDSLGNQHTLQTYYVKTA------AGTWNVYAASDGTPIPAAGTP 229 Query: 237 TGPQLLGTLRFDATGALTASTGMTVDLSSMVKGGASFPTPIALNYAGSTQTGSAFANLAQ 296 + TL F+ +GALT TV ++ V GA+ P A ++ G+TQ GSAF+ Sbjct: 230 -----VSTLTFNGSGALTGGGQFTV--TAPVTTGAN-PITAAFDFTGTTQFGSAFSVNTL 281 Query: 297 SQDGSPPGTLSSFSIGKDGSLVGSYSNQQTKVLGQIVLVNFANPNGLQPLGNNLYQATAA 356 +QDG G L+ F+IG DG+++G Y+N Q+ VLGQ+VL NFANPNGLQ +GNNL+ TA Sbjct: 282 NQDGYTSGRLAGFNIGADGTILGRYTNGQSAVLGQVVLANFANPNGLQQMGNNLWTETAT 341 Query: 357 AGSPLVGTPTTATFGSLQGRAVEQSNVDLTAELVNMIVAQRVYQANSQSIKVQDTVLQTL 416 +G+PLVGTP + G LQ AVE SNVDLTAELVNMI AQRVYQAN+Q+IK QD VLQTL Sbjct: 342 SGTPLVGTPDSGGLGVLQSSAVEDSNVDLTAELVNMITAQRVYQANAQTIKSQDAVLQTL 401 Query: 417 ISLR 420 ++LR Sbjct: 402 VNLR 405 >ref|ZP_08272755.1| Flagellar hook protein flgE [Oxalobacteraceae bacterium IMCC9480] gb|EGF33754.1| Flagellar hook protein flgE [Oxalobacteraceae bacterium IMCC9480] Length = 407 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 223/424 (52%), Positives = 280/424 (66%), Gaps = 21/424 (4%) Query: 1 MSFQQGLSGLQGASKHLEVVGNNVANASTVGFKQGQVQFADAYANSMNRSGNSPVGIGVT 60 M FQQGLSGL ASK LEV GNNVAN+STVGFK Q QFAD YA+S+ G S VGIG + Sbjct: 1 MGFQQGLSGLNAASKSLEVTGNNVANSSTVGFKSAQAQFADVYASSLTGGGASQVGIGTS 60 Query: 61 LANVSQAFTQGNIATTNNALDVAINGDGFFRMAANLNDQSPRYGRNGQFQLNKDGYLINP 120 +A V+Q FTQGN+ +NN LD+AING GFFR++ + Y RNGQFQL+K+G ++N Sbjct: 61 VATVAQQFTQGNVTASNNPLDLAINGGGFFRLSTG---GAITYSRNGQFQLDKNGGIVNS 117 Query: 121 SMNGAYLTGYPAGAAG----GDPVPLKIDTATLPATATSRITTKINLDSRKSVPTISPFD 176 NGA+LTG+ A G G P L I+TA L TS + +NLDSR++ P + F Sbjct: 118 --NGAHLTGFGVSATGVLATGTPSNLVINTADLAPKTTSEVKLLVNLDSRETTPKTTTFS 175 Query: 177 PANPNSYNNSTGATVYDSLGNPYSLQTYYVKSPPTGSPPATTWSVYGTLDGKLINAAPPA 236 +P SYN ST +V+DSLGN + LQ+Y+V++ PT A+TW VYGT DG + Sbjct: 176 ATDPTSYNRSTSVSVFDSLGNSHVLQSYFVRTSPT----ASTWDVYGTADGASLT----- 226 Query: 237 TGPQLLGTLRFDATGALTASTGMTVDLSSMVKGGASFPTPIALNYAGSTQTGSAFANLAQ 296 P L+G+L F+ G LT + + L + V GAS T + + G+TQ GS F Q Sbjct: 227 --PALIGSLSFNTDGGLTTAQPFSATLPTTVTPGASALT-LKFDLTGTTQFGSTFGLNTQ 283 Query: 297 SQDGSPPGTLSSFSIGKDGSLVGSYSNQQTKVLGQIVLVNFANPNGLQPLGNNLYQATAA 356 SQDG G LS F+ G DG + G Y+N ++ LGQ+VL NF NPNGLQ LGNN++ TAA Sbjct: 284 SQDGYTSGKLSGFATGADGVITGRYTNGKSATLGQVVLSNFTNPNGLQNLGNNVWSETAA 343 Query: 357 AGSPLVGTPTTATFGSLQGRAVEQSNVDLTAELVNMIVAQRVYQANSQSIKVQDTVLQTL 416 +G PLVGTP + G LQ AVE SNVDLTAELVNMI AQR YQAN+Q+IK QD VLQTL Sbjct: 344 SGGPLVGTPNSGNLGVLQSSAVEDSNVDLTAELVNMITAQRFYQANAQTIKTQDQVLQTL 403 Query: 417 ISLR 420 ++LR Sbjct: 404 VNLR 407