BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1142.p (379 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777753.1| glycine/D-amino acid oxidase [Herbaspirillum... 613 e-173 ref|YP_004154026.1| fad dependent oxidoreductase [Variovorax par... 419 e-115 ref|YP_587214.1| FAD dependent oxidoreductase [Cupriavidus metal... 411 e-112 ref|YP_840651.1| FAD dependent oxidoreductase [Ralstonia eutroph... 410 e-112 ref|YP_002943475.1| FAD dependent oxidoreductase [Variovorax par... 409 e-112 >ref|YP_003777753.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] gb|ADJ65845.1| glycine/D-amino acid oxidases (deaminating) protein [Herbaspirillum seropedicae SmR1] Length = 379 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 327/377 (86%), Positives = 346/377 (91%), Gaps = 2/377 (0%) Query: 1 MSQQGRVDYLIIGAGIAGASIAYWLARHGSVLLLERESQPGYHSTGRSAALYMESYGPPQ 60 MS Q RVDYLIIGAGIAGASIAYWLARHGSVLL+ERESQPGYHSTGRSAALYMESYGPPQ Sbjct: 1 MSDQARVDYLIIGAGIAGASIAYWLARHGSVLLVERESQPGYHSTGRSAALYMESYGPPQ 60 Query: 61 VRALTCASRAFFDHPPEGFTEHALLTPRGALFYATSALRDELDAHEALVRSVSDKVQRLD 120 VRALTCASRAFFDHPPEGF EH LLTPRGALF+A SA R +LD HEALVRSVSDKVQRLD Sbjct: 61 VRALTCASRAFFDHPPEGFAEHPLLTPRGALFFANSAQRAQLDEHEALVRSVSDKVQRLD 120 Query: 121 AEQTRAMVPVLREQDLIGSVYEEDASDIDVHALHQGFLRGARAAGARVLCNAEVQSLQHG 180 A+QTRAMVPVLR++DLIG+VYEEDASDIDVHALHQGFLRGARAAGARVLC+AEVQ++ Sbjct: 121 AQQTRAMVPVLRDEDLIGAVYEEDASDIDVHALHQGFLRGARAAGARVLCHAEVQAITR- 179 Query: 181 HEQGESTWHVQTSQGELRAGVIVNAAGAWADEIGQLAGAAPIGLVPKRRSAFTFAAPADS 240 ++ TW V TSQGEL GVIVNAAGAWADEIG+LAGAAPIGL PKRRSAFTFAAPA S Sbjct: 180 -DEDSQTWRVHTSQGELLGGVIVNAAGAWADEIGRLAGAAPIGLQPKRRSAFTFAAPAGS 238 Query: 241 AHWPMFMPVDESFYIKPDAGLLLGSPANADPVGAHDVQAEELDIAIAIDHIQNGTTLEIR 300 HWPMFMPVDESFYIKPDAGLLLGSPANADPV DVQAEELDIAIAIDHIQN TTLEIR Sbjct: 239 EHWPMFMPVDESFYIKPDAGLLLGSPANADPVPPQDVQAEELDIAIAIDHIQNATTLEIR 298 Query: 301 RPAHVWAGLRSFVSDGSFVGGYDAKVPDFFWAAGQGGYGIQSSPAAGEAYAALIRGEPVP 360 RPAHVWAGLRSFV+DGSFVGGYD ++P FFWAAGQGGYGIQS+PAAGE YAAL+RGEPVP Sbjct: 299 RPAHVWAGLRSFVADGSFVGGYDRELPGFFWAAGQGGYGIQSAPAAGETYAALVRGEPVP 358 Query: 361 AHIARFGVDAAALSPAR 377 AHIARFGV+A ALSP R Sbjct: 359 AHIARFGVEAGALSPGR 375 >ref|YP_004154026.1| fad dependent oxidoreductase [Variovorax paradoxus EPS] gb|ADU35915.1| FAD dependent oxidoreductase [Variovorax paradoxus EPS] Length = 378 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 227/373 (60%), Positives = 267/373 (71%), Gaps = 6/373 (1%) Query: 8 DYLIIGAGIAGASIAYWLARHGSVLLLERESQPGYHSTGRSAALYMESYGPPQVRALTCA 67 DYL+IG GIAGAS+A WLA H V+LLERE+QPGYHSTGRSAAL+MESYG PQVRALT A Sbjct: 4 DYLVIGGGIAGASVANWLAPHARVILLEREAQPGYHSTGRSAALFMESYGTPQVRALTMA 63 Query: 68 SRAFFDHPPEGFTEHALLTPRGALFYATSALRDELDAHEALVRSVSDKVQRLDAEQTRAM 127 SRAF HPPEGF+EH LLTPRGAL +A ELDAH ++R++ RL +E+ AM Sbjct: 64 SRAFLQHPPEGFSEHPLLTPRGALMVGGTAQLAELDAHWDVLRAMDTGASRLSSEEALAM 123 Query: 128 VPVLREQDLIGSVYEEDASDIDVHALHQGFLRGARAAGARVLCNAEVQSLQHGHEQGEST 187 VP LR + G+VYE DA+D+DVHA+HQG+LRG R AG +++C+A+V +++ E Sbjct: 124 VPALRPDQVAGAVYEPDAADMDVHAIHQGYLRGMRKAGGKLVCDADVTAVERIGEM---- 179 Query: 188 WHVQTSQGELRAGVIVNAAGAWADEIGQLAGAAPIGLVPKRRSAFTFAAPADS--AHWPM 245 W V A V++NAAGAW D I +LAG PIG+ P+RRSAF FA P AHWPM Sbjct: 180 WRVTAGGNVYEAPVVLNAAGAWVDTIARLAGVRPIGIEPRRRSAFIFAPPEGESVAHWPM 239 Query: 246 FMPVDESFYIKPDAGLLLGSPANADPVGAHDVQAEELDIAIAIDHIQNGTTLEIRRPAHV 305 DE +YIKPDAG+LLGSPANADPV DVQ EELDIAIAI I+ TTL IRRP Sbjct: 240 VFNADEGWYIKPDAGMLLGSPANADPVDPQDVQPEELDIAIAIHRIEEATTLAIRRPTRT 299 Query: 306 WAGLRSFVSDGSFVGGYDAKVPDFFWAAGQGGYGIQSSPAAGEAYAALIRGEPVPAHIAR 365 WAGLRSFV+DG VGG+D P FFW A QGGYGIQ+S A GEA AAL RG P+P IA Sbjct: 300 WAGLRSFVADGDLVGGFDPDAPGFFWVAAQGGYGIQTSAAMGEACAALARGLPLPERIAN 359 Query: 366 FGVDAAALSPARL 378 FG+ A L P RL Sbjct: 360 FGLTAEMLGPQRL 372 >ref|YP_587214.1| FAD dependent oxidoreductase [Cupriavidus metallidurans CH34] gb|ABF11945.1| FAD dependent oxidoreductase [Cupriavidus metallidurans CH34] Length = 385 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 229/376 (60%), Positives = 275/376 (73%), Gaps = 8/376 (2%) Query: 6 RVDYLIIGAGIAGASIAYWLARHGSVLLLERESQPGYHSTGRSAALYMESYGPPQVRALT 65 R D+L+IGAGIAGAS+AYWLA HGSV +LERESQPGYHSTGRSAAL+MESYG PQVRALT Sbjct: 9 RSDFLVIGAGIAGASVAYWLAPHGSVTVLERESQPGYHSTGRSAALFMESYGTPQVRALT 68 Query: 66 CASRAFFDHPPEGFTEHALLTPRGALFYATSALRDELDAHEALVRSVSDKVQRLDAEQTR 125 AS AF +PP+GF H LLTPRGAL A + LD H ++R+++ + + L A+Q Sbjct: 69 MASHAFLANPPQGFATHPLLTPRGALMVAAPGQQALLDEHWEILRAMAPEAELLTAQQAC 128 Query: 126 AMVPVLREQDLIGSVYEEDASDIDVHALHQGFLRGARAAGARVLCNAEVQSL-QHGHEQG 184 VPVLR + +IG+VYE A+D+DVHA+HQG+LRG R AG +++C+AEV+++ +HG Sbjct: 129 ERVPVLRPEMVIGAVYEPGAADMDVHAIHQGYLRGIRQAGGKLVCDAEVRAIARHG---- 184 Query: 185 ESTWHVQTSQGELRAGVIVNAAGAWADEIGQLAGAAPIGLVPKRRSAFTFAAPA--DSAH 242 W V+ Q A V++NAAGAWAD I + AG +P+GL P RRSAF F PA DS Sbjct: 185 -DVWRVEAGQAVYEAPVVLNAAGAWADVIARQAGVSPLGLQPCRRSAFVFQPPAGVDSHG 243 Query: 243 WPMFMPVDESFYIKPDAGLLLGSPANADPVGAHDVQAEELDIAIAIDHIQNGTTLEIRRP 302 WPM DES+YIKPDAG+LLGSPANADPV DVQ EELDIA+AI I+ TTL IR P Sbjct: 244 WPMVHSADESWYIKPDAGMLLGSPANADPVEPQDVQPEELDIAMAIHRIEEATTLTIRHP 303 Query: 303 AHVWAGLRSFVSDGSFVGGYDAKVPDFFWAAGQGGYGIQSSPAAGEAYAALIRGEPVPAH 362 A WAGLRSFV+DG VGG+D + P FFW A QGGYGIQ+S A GE AAL RG PVPAH Sbjct: 304 ARTWAGLRSFVADGDLVGGFDDRAPGFFWVAAQGGYGIQTSAAMGETCAALARGLPVPAH 363 Query: 363 IARFGVDAAALSPARL 378 A FG+ A L PARL Sbjct: 364 AASFGLTAEMLGPARL 379 >ref|YP_840651.1| FAD dependent oxidoreductase [Ralstonia eutropha H16] emb|CAJ95921.1| FAD dependent oxidoreductase [Ralstonia eutropha H16] Length = 388 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 228/375 (60%), Positives = 268/375 (71%), Gaps = 6/375 (1%) Query: 6 RVDYLIIGAGIAGASIAYWLARHGSVLLLERESQPGYHSTGRSAALYMESYGPPQVRALT 65 R DYLIIG GIAGAS+AYWLA HG V+LLERE+QPGYHSTGRSAAL+MESYG QVRALT Sbjct: 11 RADYLIIGGGIAGASVAYWLAPHGRVILLEREAQPGYHSTGRSAALFMESYGTTQVRALT 70 Query: 66 CASRAFFDHPPEGFTEHALLTPRGALFYATSALRDELDAHEALVRSVSDKVQRLDAEQTR 125 ASRAF PP GF H LLTPRGAL A + LDAH +VR+V + L A Q Sbjct: 71 MASRAFLQDPPPGFASHPLLTPRGALMVAGPGQQHLLDAHWDVVRAVDPDARLLSAAQAC 130 Query: 126 AMVPVLREQDLIGSVYEEDASDIDVHALHQGFLRGARAAGARVLCNAEVQSLQHGHEQGE 185 VP LR + +IG VYE A+D+DV A+HQG+LRG R AG +++C+AEV ++ + Sbjct: 131 ERVPALRAEQVIGGVYEPGAADMDVDAIHQGYLRGMRQAGGKLVCDAEVTAMARVRDH-- 188 Query: 186 STWHVQTSQGELRAGVIVNAAGAWADEIGQLAGAAPIGLVPKRRSAFTFAAPA--DSAHW 243 W V+ A V++NAAGAWAD I +LAG P+G+ P+RRSAF FA PA D++ W Sbjct: 189 --WRVEAGGAVYAAPVVLNAAGAWADVIARLAGVQPLGIEPRRRSAFVFAPPADMDTSGW 246 Query: 244 PMFMPVDESFYIKPDAGLLLGSPANADPVGAHDVQAEELDIAIAIDHIQNGTTLEIRRPA 303 PM DE +YIKPDAG+LLGSPANADPV DVQ EE+DIA+AID I+ T+L IRRPA Sbjct: 247 PMVFGADEDWYIKPDAGMLLGSPANADPVEPQDVQPEEMDIALAIDRIETATSLRIRRPA 306 Query: 304 HVWAGLRSFVSDGSFVGGYDAKVPDFFWAAGQGGYGIQSSPAAGEAYAALIRGEPVPAHI 363 WAGLRSFV+DG VGG+D VP FFW AGQGGYGIQ+S A GE AAL RG PVPAH Sbjct: 307 RTWAGLRSFVADGDLVGGFDDAVPGFFWVAGQGGYGIQTSAAMGETCAALARGLPVPAHP 366 Query: 364 ARFGVDAAALSPARL 378 A FG+ A L PARL Sbjct: 367 ASFGLSAGMLGPARL 381 >ref|YP_002943475.1| FAD dependent oxidoreductase [Variovorax paradoxus S110] gb|ACS18209.1| FAD dependent oxidoreductase [Variovorax paradoxus S110] Length = 386 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 223/373 (59%), Positives = 270/373 (72%), Gaps = 6/373 (1%) Query: 8 DYLIIGAGIAGASIAYWLARHGSVLLLERESQPGYHSTGRSAALYMESYGPPQVRALTCA 67 DYL+IG GIAGAS+A+WLA H V+LLERE+QPGYHSTGRSAAL+MESYG QVRALT A Sbjct: 12 DYLVIGGGIAGASVAHWLAPHARVILLEREAQPGYHSTGRSAALFMESYGTAQVRALTMA 71 Query: 68 SRAFFDHPPEGFTEHALLTPRGALFYATSALRDELDAHEALVRSVSDKVQRLDAEQTRAM 127 SRAF +HPPEGF+EH LLTPRGA+ A++ EL++H ++R+++ RL +E+ AM Sbjct: 72 SRAFLEHPPEGFSEHPLLTPRGAMMVASTEHLAELESHWNVLRAMNTGATRLGSEEALAM 131 Query: 128 VPVLREQDLIGSVYEEDASDIDVHALHQGFLRGARAAGARVLCNAEVQSLQHGHEQGEST 187 VP LR + G+VYE DA+D+DVHA+HQG+LRG R AG +++C+A V +++ E+ Sbjct: 132 VPALRPGQVAGAVYEPDAADMDVHAIHQGYLRGMRQAGGKLVCDAGVTAIERIGER---- 187 Query: 188 WHVQTSQGELRAGVIVNAAGAWADEIGQLAGAAPIGLVPKRRSAFTFAAPADS--AHWPM 245 W V A V++NAAGAW D I Q+AG PIG+ P+RRSAF FA P S AHWPM Sbjct: 188 WRVTAGGNVYEAPVLLNAAGAWVDTIAQMAGVQPIGIEPRRRSAFVFAPPEGSSVAHWPM 247 Query: 246 FMPVDESFYIKPDAGLLLGSPANADPVGAHDVQAEELDIAIAIDHIQNGTTLEIRRPAHV 305 DE +YIKPDAG+LLGSPANAD V DVQ EELDIA AI I+ TTL IRRPA Sbjct: 248 VFGADEGWYIKPDAGMLLGSPANADLVEPQDVQPEELDIAFAIHRIEEATTLAIRRPART 307 Query: 306 WAGLRSFVSDGSFVGGYDAKVPDFFWAAGQGGYGIQSSPAAGEAYAALIRGEPVPAHIAR 365 WAGLRSFV+DG VGG+D P FFW A QGGYGIQ+S A GEA AAL RG P+P IA Sbjct: 308 WAGLRSFVADGDLVGGFDPDAPGFFWVAAQGGYGIQTSAAMGEACAALARGLPLPERIAG 367 Query: 366 FGVDAAALSPARL 378 FG+ A L P RL Sbjct: 368 FGLTAEMLGPQRL 380