BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1141.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777752.1| endoribonuclease L-PSP protein [Herbaspirill...   168   2e-40
ref|YP_001861589.1| endoribonuclease L-PSP [Burkholderia phymatu...   141   4e-32
ref|YP_370824.1| endoribonuclease L-PSP [Burkholderia sp. 383] >...   136   1e-30
ref|YP_001897329.1| endoribonuclease L-PSP [Burkholderia phytofi...   133   9e-30
ref|YP_001893411.1| Endoribonuclease L-PSP [Ralstonia pickettii ...   127   4e-28

>ref|YP_003777752.1| endoribonuclease L-PSP protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65844.1| endoribonuclease L-PSP protein [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 92/107 (85%), Positives = 100/107 (93%)

Query: 1   MSTIQRFNTNARMSQLVLANNFAFVAGQVADHPGAPIPQQASEVLAKVDAQLQAQGIARE 60
           M+ I+RFNTNARMSQLV+AN FAFV+GQV DH GAPI QQA+EVLAK+DAQLQAQGI RE
Sbjct: 1   MNKIERFNTNARMSQLVIANGFAFVSGQVPDHAGAPIAQQAAEVLAKIDAQLQAQGIGRE 60

Query: 61  RIVSANVWLSSPEHFAAFNAVWDAWVPAGHAPTRACVQALLMAPGLD 107
           RIVSANVWLSSPEHFAAFNAVW+AW+PAGHAPTRACVQALLM PGLD
Sbjct: 61  RIVSANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLPGLD 107


>ref|YP_001861589.1| endoribonuclease L-PSP [Burkholderia phymatum STM815]
 gb|ACC74543.1| Endoribonuclease L-PSP [Burkholderia phymatum STM815]
          Length = 117

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/111 (63%), Positives = 88/111 (79%)

Query: 4   IQRFNTNARMSQLVLANNFAFVAGQVADHPGAPIPQQASEVLAKVDAQLQAQGIARERIV 63
           IQR  TNARMSQ+V+AN   +++GQV D P API  QA+E+L ++D  L +  I + R++
Sbjct: 5   IQRLQTNARMSQVVIANGVVYLSGQVPDTPSAPIAVQATEILNRIDTLLASAKIDKTRVL 64

Query: 64  SANVWLSSPEHFAAFNAVWDAWVPAGHAPTRACVQALLMAPGLDVEVAVIA 114
           +ANVWLS P+HF  FNAVWDAWVP+GHAPTRACVQALLM PGLDVE+AV A
Sbjct: 65  TANVWLSDPKHFDEFNAVWDAWVPSGHAPTRACVQALLMKPGLDVEIAVTA 115


>ref|YP_370824.1| endoribonuclease L-PSP [Burkholderia sp. 383]
 gb|ABB10180.1| Endoribonuclease L-PSP [Burkholderia sp. 383]
          Length = 117

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/113 (64%), Positives = 88/113 (77%)

Query: 2   STIQRFNTNARMSQLVLANNFAFVAGQVADHPGAPIPQQASEVLAKVDAQLQAQGIARER 61
           S I+R  T  RMSQ+V+AN F  +AGQV D  GAPI  QA+E+L ++DA L + G+ + R
Sbjct: 3   SEIKRLQTGTRMSQVVIANGFVHLAGQVPDTAGAPIAVQATEILTRIDALLASAGVDKTR 62

Query: 62  IVSANVWLSSPEHFAAFNAVWDAWVPAGHAPTRACVQALLMAPGLDVEVAVIA 114
           +++ANVWLS   HF AFNAVWDAWVPAGHAPTRACVQALLM PGLDVE+AV A
Sbjct: 63  VLTANVWLSDAAHFDAFNAVWDAWVPAGHAPTRACVQALLMKPGLDVEIAVTA 115


>ref|YP_001897329.1| endoribonuclease L-PSP [Burkholderia phytofirmans PsJN]
 gb|ACD18105.1| Endoribonuclease L-PSP [Burkholderia phytofirmans PsJN]
          Length = 117

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 65/111 (58%), Positives = 82/111 (73%)

Query: 4   IQRFNTNARMSQLVLANNFAFVAGQVADHPGAPIPQQASEVLAKVDAQLQAQGIARERIV 63
           IQR  TNARMSQ+V+A    +++GQV   P A I  Q +EVL ++D  L+ +GI + R++
Sbjct: 5   IQRLQTNARMSQVVVARGTVYLSGQVPHTPNASIEIQTTEVLDRIDKLLETEGIDKTRLL 64

Query: 64  SANVWLSSPEHFAAFNAVWDAWVPAGHAPTRACVQALLMAPGLDVEVAVIA 114
           +AN+WLSSPEHFA FN VWDAWV  G APTRACV +LLM  GLDVE+AV A
Sbjct: 65  TANIWLSSPEHFAEFNGVWDAWVAEGTAPTRACVTSLLMRKGLDVEIAVTA 115


>ref|YP_001893411.1| Endoribonuclease L-PSP [Ralstonia pickettii 12J]
 ref|YP_002983754.1| endoribonuclease L-PSP [Ralstonia pickettii 12D]
 gb|ACD29984.1| Endoribonuclease L-PSP [Ralstonia pickettii 12J]
 gb|ACS65082.1| Endoribonuclease L-PSP [Ralstonia pickettii 12D]
          Length = 118

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/114 (54%), Positives = 85/114 (74%)

Query: 1   MSTIQRFNTNARMSQLVLANNFAFVAGQVADHPGAPIPQQASEVLAKVDAQLQAQGIARE 60
           M+ IQRF+TNARMSQ+V+AN    +AGQV +     + +Q + +L ++DA L   G+ + 
Sbjct: 1   MTDIQRFHTNARMSQIVIANGIVHLAGQVPEIDFKSVTEQTNNILERIDALLAEAGVDKT 60

Query: 61  RIVSANVWLSSPEHFAAFNAVWDAWVPAGHAPTRACVQALLMAPGLDVEVAVIA 114
           R++SAN+WL+  +HFA  NA W+AWVPAGHAPTRACVQ+ LM PG+DVE+AV A
Sbjct: 61  RLISANIWLTDAKHFAELNAAWEAWVPAGHAPTRACVQSGLMRPGIDVEIAVTA 114