BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1140.p (506 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777751.1| amidase family protein [Herbaspirillum serop... 853 0.0 gb|EGH52226.1| amidase [Pseudomonas syringae Cit 7] 693 0.0 gb|EGH84182.1| amidase family protein [Pseudomonas syringae pv. ... 693 0.0 ref|NP_792379.1| amidase family protein [Pseudomonas syringae pv... 690 0.0 ref|ZP_06478240.1| amidase family protein [Pseudomonas syringae ... 689 0.0 >ref|YP_003777751.1| amidase family protein [Herbaspirillum seropedicae SmR1] gb|ADJ65843.1| amidase family protein [Herbaspirillum seropedicae SmR1] Length = 506 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 440/506 (86%), Positives = 468/506 (92%) Query: 1 MSDSLVEKTAVELRQLIGSKQVSPVELLDACIARIEDLNPHINAVTATCFERARKEARAA 60 M D LVEK+AVELRQLIGSKQ+SPVELL+ACIARIED+NPHINAVTATCFERAR EARAA Sbjct: 1 MQDKLVEKSAVELRQLIGSKQLSPVELLEACIARIEDINPHINAVTATCFERARGEARAA 60 Query: 61 EQAVMDGTELGLLHGLPIGIKDLEETEGLLTTYGSPIYRGNVPAHDNALVARLRAAGAIV 120 EQAV+DG LGLLHGLPIGIKDLEETEGLLTTYGSP+YRGN+PA DNALVARLRAAGAIV Sbjct: 61 EQAVIDGKPLGLLHGLPIGIKDLEETEGLLTTYGSPLYRGNIPARDNALVARLRAAGAIV 120 Query: 121 AGKTNVPEMGAGANSRNTVWGATGNPFNPLLNAGGSSGGSAAALAVDLLPLCSGSDTGGS 180 AGKTNVPEMGAGANSRN VWGATGNPFNPLLNAGGSSGGSAAALA DLLPLCSGSDTGGS Sbjct: 121 AGKTNVPEMGAGANSRNAVWGATGNPFNPLLNAGGSSGGSAAALATDLLPLCSGSDTGGS 180 Query: 181 LRIPAAKCGVVGFRPSPGLVPSERKLLGWTPISVVGPMGRNVADTVLQLRATIGLHASDP 240 LRIPAAKCGVVGFRPSPGLVPSERKLLGWTPISVVGPMGR+VADTVLQLRAT+GLHASDP Sbjct: 181 LRIPAAKCGVVGFRPSPGLVPSERKLLGWTPISVVGPMGRDVADTVLQLRATLGLHASDP 240 Query: 241 LSYAVDDAAFAALPPVDLSRLRIGYTEDFGVCAVDEGIREVFRQKMAAIGRFVQVCEPVE 300 L YAV D+ FA+LP VDLS+LRIGYTEDFGVC VD GIR+VFR KMAAI +V++CEPV+ Sbjct: 241 LGYAVSDSEFASLPQVDLSQLRIGYTEDFGVCDVDNGIRQVFRDKMAAIAPYVKLCEPVD 300 Query: 301 VDMGEAHRAFDVIRAEAFVAGFEAAYRRDPASLGPNTRANYEMGAAMSLSDCAWAQGEQT 360 VDMGEAHRAFDVIRAEAFVAGF+AAYRRDPASLGPNTRANYEMGAAMSL DCAWAQ EQT Sbjct: 301 VDMGEAHRAFDVIRAEAFVAGFDAAYRRDPASLGPNTRANYEMGAAMSLLDCAWAQSEQT 360 Query: 361 RLFRRFQQLYARYDLILSPTTPVSPFPWSELYLKEVNGVALENYYRWLALTYVVTLVTNP 420 R+FRRFQQLY RYDLILSPTTPVSPFPWSELYLKEVNGVALENYYRWLALTYVVTL TNP Sbjct: 361 RIFRRFQQLYERYDLILSPTTPVSPFPWSELYLKEVNGVALENYYRWLALTYVVTLATNP 420 Query: 421 SISLPCGRDHRGMPFGLQVTGAFRDDARLLALAGALEAAFAGDETLQRPRPDLAKLKSVN 480 +ISLPCGRDHRGMPFGLQVTG FR DAR+LA A ALE AFAG+ETL+RPRPDL KLK+V+ Sbjct: 421 AISLPCGRDHRGMPFGLQVTGPFRGDARVLACAAALEQAFAGNETLRRPRPDLTKLKTVH 480 Query: 481 AALTSLVTHPPIFDGAATAAAAQAAV 506 A LTS+VT PP+ G T + AV Sbjct: 481 APLTSIVTDPPLLQGQGTEQSGGPAV 506 >gb|EGH52226.1| amidase [Pseudomonas syringae Cit 7] Length = 507 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 355/498 (71%), Positives = 409/498 (82%), Gaps = 1/498 (0%) Query: 2 SDSLVEKTAVELRQLIGSKQVSPVELLDACIARIEDLNPHINAVTATCFERARKEARAAE 61 S L+ K+A ELR LIG+KQ+SPVELLDACI RIE LNP +NA ATCFERAR EA AE Sbjct: 4 SSELLGKSATELRALIGNKQLSPVELLDACIERIESLNPKLNAFAATCFERARDEALLAE 63 Query: 62 QAVMDGTELGLLHGLPIGIKDLEETEGLLTTYGSPIYRGNVPAHDNALVARLRAAGAIVA 121 AV+ G LGLLHGLPIGIKDLEET G+LTTYGS ++R N+PA DN VARLRAAGAIV Sbjct: 64 HAVLQGKPLGLLHGLPIGIKDLEETAGVLTTYGSQLFRDNIPAQDNLFVARLRAAGAIVV 123 Query: 122 GKTNVPEMGAGANSRNTVWGATGNPFNPLLNAGGSSGGSAAALAVDLLPLCSGSDTGGSL 181 GKTNVPE+GAGAN+RN VWGATGNPFNP LNAGGSSGGSAAALAVD++PLCSGSDTGGSL Sbjct: 124 GKTNVPELGAGANTRNVVWGATGNPFNPELNAGGSSGGSAAALAVDMVPLCSGSDTGGSL 183 Query: 182 RIPAAKCGVVGFRPSPGLVPSERKLLGWTPISVVGPMGRNVADTVLQLRATIGLHASDPL 241 RIPAA CG+VG RPSPGLVPSERK LGWTPISVVGPMGRNVADT+LQLRA+ GL SDPL Sbjct: 184 RIPAALCGIVGLRPSPGLVPSERKKLGWTPISVVGPMGRNVADTLLQLRASAGLGQSDPL 243 Query: 242 SYAVDDAAFAALPPVDLSRLRIGYTEDFGVCAVDEGIREVFRQKMAAIGRFVQVCEPVEV 301 SYA+ D AFA VDLS+LR+GY+EDFG CAVD+ IR VFR+K++A+ + CE +++ Sbjct: 244 SYAIADDAFAP-RTVDLSQLRVGYSEDFGACAVDDRIRAVFREKISALKSLFKSCEAIDL 302 Query: 302 DMGEAHRAFDVIRAEAFVAGFEAAYRRDPASLGPNTRANYEMGAAMSLSDCAWAQGEQTR 361 ++ AHR FDV+RAEAFVAG + A+ RDP +LGPNTRAN++MGAAMSL DC A GEQ+R Sbjct: 303 NLTNAHRTFDVLRAEAFVAGLQDAHDRDPDALGPNTRANFDMGAAMSLQDCVKAHGEQSR 362 Query: 362 LFRRFQQLYARYDLILSPTTPVSPFPWSELYLKEVNGVALENYYRWLALTYVVTLVTNPS 421 +FR FQ+ + YDLIL+PTTPVSPFPWSELYL+EVNGV L+NYYRWLAL Y +TL TNP+ Sbjct: 363 IFRGFQKQFEHYDLILAPTTPVSPFPWSELYLREVNGVPLDNYYRWLALCYTITLTTNPA 422 Query: 422 ISLPCGRDHRGMPFGLQVTGAFRDDARLLALAGALEAAFAGDETLQRPRPDLAKLKSVNA 481 +SLPCG DH GMPFGLQV G FR DA+LLA A ALE A A D L RPRPDL KL + Sbjct: 423 LSLPCGTDHNGMPFGLQVIGGFRGDAKLLACAEALEQATANDPRLSRPRPDLQKLLASAV 482 Query: 482 ALTSLVTHPPIFDGAATA 499 LT +VTHPP++ G+ T Sbjct: 483 DLTHIVTHPPVYGGSRTG 500 >gb|EGH84182.1| amidase family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 507 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 354/495 (71%), Positives = 407/495 (82%), Gaps = 1/495 (0%) Query: 5 LVEKTAVELRQLIGSKQVSPVELLDACIARIEDLNPHINAVTATCFERARKEARAAEQAV 64 L++K+A ELR LIG+KQ+SPVELLDACI RIE LNP INA ATCF+RAR EA AE AV Sbjct: 7 LLDKSATELRALIGNKQISPVELLDACIERIESLNPKINAFAATCFKRARDEALLAEHAV 66 Query: 65 MDGTELGLLHGLPIGIKDLEETEGLLTTYGSPIYRGNVPAHDNALVARLRAAGAIVAGKT 124 + G LGLLHGLPIGIKDLEET G+LTTYGS ++R N+PA DN VARLRAAGAIV GKT Sbjct: 67 LQGKPLGLLHGLPIGIKDLEETAGVLTTYGSQLFRDNIPAQDNLFVARLRAAGAIVVGKT 126 Query: 125 NVPEMGAGANSRNTVWGATGNPFNPLLNAGGSSGGSAAALAVDLLPLCSGSDTGGSLRIP 184 NVPE+GAGAN+RN VWGATGNPFNP LNAGGSSGGSAAALAVD++PLCSGSDTGGSLRIP Sbjct: 127 NVPELGAGANTRNVVWGATGNPFNPELNAGGSSGGSAAALAVDMVPLCSGSDTGGSLRIP 186 Query: 185 AAKCGVVGFRPSPGLVPSERKLLGWTPISVVGPMGRNVADTVLQLRATIGLHASDPLSYA 244 AA CG+VG RPSPGLVPSERK LGWTPISVVGPMGRNVADT+LQLRA+ GL SDPLSYA Sbjct: 187 AALCGIVGLRPSPGLVPSERKKLGWTPISVVGPMGRNVADTLLQLRASAGLGQSDPLSYA 246 Query: 245 VDDAAFAALPPVDLSRLRIGYTEDFGVCAVDEGIREVFRQKMAAIGRFVQVCEPVEVDMG 304 + D FA VDLS+LR+GY+EDFG CAVD+ IR VFR+K+ A+ + CE +++++G Sbjct: 247 IADDEFAP-RTVDLSQLRVGYSEDFGACAVDDTIRAVFREKINALRPLFKSCEAIDLNLG 305 Query: 305 EAHRAFDVIRAEAFVAGFEAAYRRDPASLGPNTRANYEMGAAMSLSDCAWAQGEQTRLFR 364 AHR FDV+RAEAFVAG + A+ RDP +LGPNTRAN+EMGAAMSL DC A GEQ+R+FR Sbjct: 306 SAHRTFDVLRAEAFVAGLQDAHDRDPDALGPNTRANFEMGAAMSLQDCVKAHGEQSRIFR 365 Query: 365 RFQQLYARYDLILSPTTPVSPFPWSELYLKEVNGVALENYYRWLALTYVVTLVTNPSISL 424 FQ+ + YDLIL+PTTPVSPFPWSELYL+EVNGV L+NYYRWLAL Y +TL TNP++SL Sbjct: 366 GFQKQFEHYDLILAPTTPVSPFPWSELYLREVNGVPLDNYYRWLALCYTITLTTNPALSL 425 Query: 425 PCGRDHRGMPFGLQVTGAFRDDARLLALAGALEAAFAGDETLQRPRPDLAKLKSVNAALT 484 PCG DH GMPFGLQV G FR DA+LLA A ALE A D L RPRPDL KL + LT Sbjct: 426 PCGTDHNGMPFGLQVIGGFRGDAKLLACAEALEQATTNDPRLSRPRPDLQKLLASAVDLT 485 Query: 485 SLVTHPPIFDGAATA 499 +VTHPP++ G+ T Sbjct: 486 HIVTHPPVYGGSRTG 500 >ref|NP_792379.1| amidase family protein [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO56074.1| amidase family protein [Pseudomonas syringae pv. tomato str. DC3000] gb|EGH94580.1| amidase family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 507 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 354/492 (71%), Positives = 405/492 (82%), Gaps = 1/492 (0%) Query: 5 LVEKTAVELRQLIGSKQVSPVELLDACIARIEDLNPHINAVTATCFERARKEARAAEQAV 64 L+ K+A ELR LIG+KQ+SPVELLDACI RIE LNP INA ATCFERA EA AE AV Sbjct: 7 LLGKSATELRALIGNKQISPVELLDACIERIESLNPKINAFAATCFERAHDEALLAEHAV 66 Query: 65 MDGTELGLLHGLPIGIKDLEETEGLLTTYGSPIYRGNVPAHDNALVARLRAAGAIVAGKT 124 + G LGLLHGLPIGIKDLEET G+LTTYGS ++R N+PA DN VARLRAAGAI+ GKT Sbjct: 67 LQGKPLGLLHGLPIGIKDLEETAGVLTTYGSQLFRDNIPAQDNLFVARLRAAGAIMVGKT 126 Query: 125 NVPEMGAGANSRNTVWGATGNPFNPLLNAGGSSGGSAAALAVDLLPLCSGSDTGGSLRIP 184 NVPE+GAGAN+RN VWGATGNPFNP LNAGGSSGGSAAALAVD++PLCSGSDTGGSLRIP Sbjct: 127 NVPELGAGANTRNVVWGATGNPFNPELNAGGSSGGSAAALAVDMVPLCSGSDTGGSLRIP 186 Query: 185 AAKCGVVGFRPSPGLVPSERKLLGWTPISVVGPMGRNVADTVLQLRATIGLHASDPLSYA 244 AA CGVVG RPSPGLVPSERK LGWTPISVVGPMGRNVADT+LQLRA+ GL SDPLSYA Sbjct: 187 AALCGVVGLRPSPGLVPSERKKLGWTPISVVGPMGRNVADTLLQLRASAGLAQSDPLSYA 246 Query: 245 VDDAAFAALPPVDLSRLRIGYTEDFGVCAVDEGIREVFRQKMAAIGRFVQVCEPVEVDMG 304 + D FA VDLS+LR+GY+EDFG CAVD IR VFR+K++A+ + C+ +++++ Sbjct: 247 IADDEFAP-RTVDLSQLRVGYSEDFGTCAVDTHIRAVFREKISALKPLFKSCDAIDLNLT 305 Query: 305 EAHRAFDVIRAEAFVAGFEAAYRRDPASLGPNTRANYEMGAAMSLSDCAWAQGEQTRLFR 364 AHR FDV+RAEAFVAG + A+ RDP +LGPNTRAN+EMGAAMSL DC A GEQ+RLFR Sbjct: 306 SAHRTFDVLRAEAFVAGLQDAHDRDPDALGPNTRANFEMGAAMSLQDCVKAHGEQSRLFR 365 Query: 365 RFQQLYARYDLILSPTTPVSPFPWSELYLKEVNGVALENYYRWLALTYVVTLVTNPSISL 424 FQ+ + YDLIL+PTTPVSPFPWSELYL+EVNGV L+NYYRWLAL Y VTL TNP++SL Sbjct: 366 GFQKQFEHYDLILAPTTPVSPFPWSELYLREVNGVQLDNYYRWLALCYTVTLTTNPALSL 425 Query: 425 PCGRDHRGMPFGLQVTGAFRDDARLLALAGALEAAFAGDETLQRPRPDLAKLKSVNAALT 484 PCG DH+GMPFGLQV G FR DA+LLA A ALE A A D L RPRPDL KL + LT Sbjct: 426 PCGTDHQGMPFGLQVIGGFRGDAKLLACAEALEQATANDPRLSRPRPDLQKLLASAVDLT 485 Query: 485 SLVTHPPIFDGA 496 +VTHPP++ G+ Sbjct: 486 HIVTHPPVYGGS 497 >ref|ZP_06478240.1| amidase family protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 507 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 353/495 (71%), Positives = 405/495 (81%), Gaps = 1/495 (0%) Query: 5 LVEKTAVELRQLIGSKQVSPVELLDACIARIEDLNPHINAVTATCFERARKEARAAEQAV 64 L+ K+A ELR LIG+KQ+SPVELLDACI RIE LNP INA ATCF+RAR EA AE AV Sbjct: 7 LLGKSATELRALIGNKQISPVELLDACIERIESLNPKINAFAATCFKRARDEALLAEHAV 66 Query: 65 MDGTELGLLHGLPIGIKDLEETEGLLTTYGSPIYRGNVPAHDNALVARLRAAGAIVAGKT 124 + G LGLLHGLPIGIKDLEET G+LTTYGS ++R N+PA DN VARLRAAGAIV GKT Sbjct: 67 LQGKPLGLLHGLPIGIKDLEETAGVLTTYGSQLFRDNIPAQDNLFVARLRAAGAIVVGKT 126 Query: 125 NVPEMGAGANSRNTVWGATGNPFNPLLNAGGSSGGSAAALAVDLLPLCSGSDTGGSLRIP 184 NVPE+GAGAN+RN VWGATGNPFNP LNAGGSSGGSAAALAVD++PLCSGSDTGGSLRIP Sbjct: 127 NVPELGAGANTRNVVWGATGNPFNPELNAGGSSGGSAAALAVDMVPLCSGSDTGGSLRIP 186 Query: 185 AAKCGVVGFRPSPGLVPSERKLLGWTPISVVGPMGRNVADTVLQLRATIGLHASDPLSYA 244 AA CG+VG RPSPGLVPSERK LGWTPISVVGPMGRNVADT+LQLRA+ GL SDPLSYA Sbjct: 187 AALCGIVGLRPSPGLVPSERKKLGWTPISVVGPMGRNVADTLLQLRASAGLGQSDPLSYA 246 Query: 245 VDDAAFAALPPVDLSRLRIGYTEDFGVCAVDEGIREVFRQKMAAIGRFVQVCEPVEVDMG 304 + D FA VDL +LR+GY+EDFG CAVD+ IR VFR+K+ A+ + CE +++++G Sbjct: 247 IADDEFAP-RTVDLGQLRVGYSEDFGACAVDDTIRAVFREKINALRPLFKSCEAIDLNLG 305 Query: 305 EAHRAFDVIRAEAFVAGFEAAYRRDPASLGPNTRANYEMGAAMSLSDCAWAQGEQTRLFR 364 AHR FDV+RAEAFVAG + A+ RDP +LGPNTRAN+EMGAAMSL DC A GEQ+R+FR Sbjct: 306 SAHRTFDVLRAEAFVAGLQDAHDRDPDALGPNTRANFEMGAAMSLQDCVKAHGEQSRIFR 365 Query: 365 RFQQLYARYDLILSPTTPVSPFPWSELYLKEVNGVALENYYRWLALTYVVTLVTNPSISL 424 FQ+ + YDLIL+PTTPVSPFPWSELYL+EVNGV L+NYYRWLAL Y +TL TNP++SL Sbjct: 366 GFQKQFEHYDLILAPTTPVSPFPWSELYLREVNGVPLDNYYRWLALCYTITLTTNPALSL 425 Query: 425 PCGRDHRGMPFGLQVTGAFRDDARLLALAGALEAAFAGDETLQRPRPDLAKLKSVNAALT 484 PCG DH GMPFGLQV G FR DA+LLA A ALE A D L RPRPDL KL + LT Sbjct: 426 PCGTDHNGMPFGLQVIGGFRGDAKLLACAEALEQATTNDPRLSRPRPDLQKLLASAVDLT 485 Query: 485 SLVTHPPIFDGAATA 499 +VTHPP++ G+ T Sbjct: 486 HIVTHPPVYGGSRTG 500