BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1138.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777749.1| LysR family transcription regulator protein ... 520 e-145 ref|YP_004483189.1| LysR family transcriptional regulator [Marin... 287 2e-75 ref|YP_004157221.1| LysR family transcriptional regulator [Vario... 281 1e-73 ref|YP_001342659.1| LysR family transcriptional regulator [Marin... 280 2e-73 ref|YP_002988821.1| LysR family transcriptional regulator [Dicke... 278 7e-73 >ref|YP_003777749.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65841.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 288/306 (94%), Positives = 296/306 (96%) Query: 1 MSIIHTRVLQETAVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVS 60 MS IHTRVLQETAVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERV+ Sbjct: 28 MSTIHTRVLQETAVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVA 87 Query: 61 RGMRPNAAGELLAAHALRQQLEAERIGNELAALKGLRRGEVKLATTEGFALEFVPAAIEQ 120 RGMRPNAAGELLAAHALR QLEAERIGNELAALKGLRRGEVKLA TEGFALEFVPA IEQ Sbjct: 88 RGMRPNAAGELLAAHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQ 147 Query: 121 FCRQHKGIRFQLSVGNAVHVAQQIREGAVDLGLTFTMAPDPDIKVEFAQRAPIMAVMRPD 180 FCRQHKGIRFQLSVGNA+HVAQQIREGAVDLGLTFTMAPD DIKVEFAQRAPI+AVM P Sbjct: 148 FCRQHKGIRFQLSVGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPA 207 Query: 181 HVLAHRKQVSLSELAPYPLAMPQKNITMRRLIDACCSRRNVLLEPTLAADSISALLCFVM 240 H LAHRKQVSLSELAPYPLAMP+K ITMRRLIDACCSRRNVLLEPTLAADSISALLCFVM Sbjct: 208 HELAHRKQVSLSELAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVM 267 Query: 241 SGDGIGFSAALPIRKLVREGQLAALPIRDKDMNTLQLEIQSLAGRTLPNAARAFLNALIA 300 +G GIGFSAALPIRKLVREG+LAALPIRDKDMNTLQLEIQSLAGRTLP+AARAFLNALIA Sbjct: 268 AGQGIGFSAALPIRKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALIA 327 Query: 301 RASGRH 306 RA+GRH Sbjct: 328 RAAGRH 333 >ref|YP_004483189.1| LysR family transcriptional regulator [Marinomonas posidonica IVIA-Po-181] gb|AEF56270.1| transcriptional regulator, LysR family [Marinomonas posidonica IVIA-Po-181] Length = 308 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 145/293 (49%), Positives = 201/293 (68%) Query: 9 LQETAVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVSRGMRPNAA 68 LQ+TA+RYFLEV + GSI+EA+ LNVASSAISRQI LE L LFER RGM+ +AA Sbjct: 7 LQDTAIRYFLEVAQLGSISEASIRLNVASSAISRQIGSLEDILGATLFERQPRGMKLSAA 66 Query: 69 GELLAAHALRQQLEAERIGNELAALKGLRRGEVKLATTEGFALEFVPAAIEQFCRQHKGI 128 GE+LA +A + LE+ R+ E+ AL GL +G + +A +EGFA++F+P I F RQH GI Sbjct: 67 GEMLATYARKNALESARVVAEIGALNGLEKGHINIACSEGFAMDFIPRTISNFRRQHDGI 126 Query: 129 RFQLSVGNAVHVAQQIREGAVDLGLTFTMAPDPDIKVEFAQRAPIMAVMRPDHVLAHRKQ 188 F L V VA+ + G D+G+T +++P DIKVE+ Q +PIMAV P H LAH+K Sbjct: 127 HFHLKVCAPGDVAKLVSHGESDIGITLSLSPTKDIKVEYRQPSPIMAVFHPSHPLAHKKS 186 Query: 189 VSLSELAPYPLAMPQKNITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMSGDGIGFS 248 VSLS+L PYP+A+P++N T+R+L D CCSR N+L EP L ++ ++ L F G GI S Sbjct: 187 VSLSQLQPYPIALPEENTTVRQLFDICCSRLNLLFEPILESNHMATLSRFTSFGGGIHLS 246 Query: 249 AALPIRKLVREGQLAALPIRDKDMNTLQLEIQSLAGRTLPNAARAFLNALIAR 301 + +R + +L A+PIRD+ M+ +E+Q+L+GRTLPN + FL+ LI + Sbjct: 247 GEISMRHQIATQELIAVPIRDRGMDVRNIEVQTLSGRTLPNVVKVFLDYLIDK 299 >ref|YP_004157221.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU39110.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 303 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 148/303 (48%), Positives = 221/303 (72%), Gaps = 2/303 (0%) Query: 4 IHTRVLQETAVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVSRGM 63 + R LQETAVRYFLEVV+ GS+ EAA LNVA SA+SRQ+ARLE ELDT LFER +RGM Sbjct: 1 MQLRALQETAVRYFLEVVKTGSVKEAALKLNVAPSAVSRQVARLERELDTLLFERHARGM 60 Query: 64 RPNAAGELLAAHALRQQLEAERIGNELAALKGLRRGEVKLATTEGFALEFVPAAIEQFCR 123 PNAAGELLAAHA R Q E ER+ N++A+L+GLR G V++A+TEGFA +F+P I F R Sbjct: 61 EPNAAGELLAAHAKRAQQEIERVANDIASLRGLRSGHVRVASTEGFAFDFIPTLIAHFRR 120 Query: 124 QHKGIRFQLSVGNAVHVAQQIREGAVDLGLTFTMAPDPDIKVEFAQRAPIMAVMRPDHVL 183 +H+GIRF L V + +++++R+G D+G+T + P+ I++E +P++A+M H L Sbjct: 121 KHEGIRFHLEVCSLADISRRVRDGEADVGVTLSAVPEAGIEIELRHPSPVLALMAKGHPL 180 Query: 184 AHRKQVSLSELAPYPLAMPQKNITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMSGD 243 A ++Q+SL ++ YPL +PQ++ ++RRL+DA C+R+ + ++++ +ALL F +G Sbjct: 181 AAQRQLSLRQVVAYPLGLPQEDSSIRRLLDASCTRQGLRYAQAMSSNHANALLSFAAAGG 240 Query: 244 GIGFSAALPIRKLVREGQLAALPIRDKDMNTLQLEIQSLAGRTLPNAARAFLNALI--AR 301 GI F AL IR L++ L A+P++D++MN L+I+++AGR+LP+A++AF+ L+ + Sbjct: 241 GIAFYGALSIRTLLQSKALVAIPLKDREMNERHLQIETMAGRSLPDASKAFVRYLVEAVQ 300 Query: 302 ASG 304 ASG Sbjct: 301 ASG 303 >ref|YP_001342659.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1] gb|ABR72724.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1] Length = 306 Score = 280 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 140/293 (47%), Positives = 214/293 (73%) Query: 9 LQETAVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVSRGMRPNAA 68 LQ+TA+RYFLEV R GSI+EA+ LNVA+SAISRQI LE L+T LFER RGM +AA Sbjct: 7 LQDTALRYFLEVARYGSISEASLHLNVAASAISRQINNLEDILNTTLFERRPRGMELSAA 66 Query: 69 GELLAAHALRQQLEAERIGNELAALKGLRRGEVKLATTEGFALEFVPAAIEQFCRQHKGI 128 GE+LA +A + LE++RI +E+AAL+GL RG VK++ +EGFA+EF+P +I F +QH GI Sbjct: 67 GEMLAVYARKNALESDRIVSEIAALEGLNRGHVKISCSEGFAMEFLPRSIASFRKQHDGI 126 Query: 129 RFQLSVGNAVHVAQQIREGAVDLGLTFTMAPDPDIKVEFAQRAPIMAVMRPDHVLAHRKQ 188 FQ++V + V++++ G D+G+T +++P DI+V + Q +PI+AV+ P+H LA++K Sbjct: 127 HFQINVSSPGEVSRRVSHGDADIGVTLSLSPAKDIQVAYRQPSPILAVVNPNHPLANKKS 186 Query: 189 VSLSELAPYPLAMPQKNITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMSGDGIGFS 248 +SL++L PYP+A+P+++ T+R+L D CCSR N+L +P L +++++ L F G+ + Sbjct: 187 ISLAQLQPYPIALPEESTTVRQLFDICCSRLNLLFDPVLVSNNMATLNRFTTYDGGVHLA 246 Query: 249 AALPIRKLVREGQLAALPIRDKDMNTLQLEIQSLAGRTLPNAARAFLNALIAR 301 + IR + +L A+PIRD+ M+ +E+Q+L+GRTLP AAR FL+ +I + Sbjct: 247 GEISIRHQLSSSELVAIPIRDRGMDIRNIEVQTLSGRTLPAAARVFLDYMIEK 299 >ref|YP_002988821.1| LysR family transcriptional regulator [Dickeya dadantii Ech703] gb|ACS86999.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703] Length = 307 Score = 278 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 149/293 (50%), Positives = 203/293 (69%) Query: 7 RVLQETAVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVSRGMRPN 66 R LQ+TA+RYFLEVVR GSI+EAA LNVA SAISRQI+ LE L+T LFER GM P Sbjct: 4 RYLQDTAIRYFLEVVRSGSISEAAQRLNVAGSAISRQISGLEDRLNTTLFERRKSGMTPT 63 Query: 67 AAGELLAAHALRQQLEAERIGNELAALKGLRRGEVKLATTEGFALEFVPAAIEQFCRQHK 126 AAGELLAA+A R QLE E++ E+ L+GLRRG+V++ +T GF+L+F+P AI F +++ Sbjct: 64 AAGELLAAYAFRNQLETEQVTQEIRELQGLRRGDVRIVSTAGFSLDFIPMAISSFRQRYP 123 Query: 127 GIRFQLSVGNAVHVAQQIREGAVDLGLTFTMAPDPDIKVEFAQRAPIMAVMRPDHVLAHR 186 IRFQL V A VA+++ EG D+GLTF+ P +I V + +P++AVM+ H LA + Sbjct: 124 YIRFQLLVATAEEVARRLNEGESDIGLTFSQIPTANIHVAYRLHSPLVAVMQRHHPLAEK 183 Query: 187 KQVSLSELAPYPLAMPQKNITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMSGDGIG 246 + LS+LA YPL +P ++I RRL DACCSR+ +L++P SISALL F DG+ Sbjct: 184 TNLRLSQLAGYPLGVPVRHILTRRLFDACCSRQGLLIDPAFETTSISALLAFSRYCDGVV 243 Query: 247 FSAALPIRKLVREGQLAALPIRDKDMNTLQLEIQSLAGRTLPNAARAFLNALI 299 S L +R+ +++ + A+PI +D+N L +E+ +LAGRTLP A AF LI Sbjct: 244 ISTELVVRQYLKDHDMVAVPITGQDLNGLNIELNTLAGRTLPKAVSAFTEHLI 296