BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1137.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774784.1| transcription regulator protein [Herbaspiril... 224 4e-57 ref|NP_522377.1| transcription regulator protein [Ralstonia sola... 110 1e-22 emb|CBJ40436.1| putative transcription regulator protein, TetR f... 110 1e-22 gb|AEG71769.1| conserved hypothetical protein [Ralstonia solanac... 108 7e-22 ref|YP_002257563.1| hypothetical protein RSIPO_03871 [Ralstonia ... 97 1e-18 >ref|YP_003774784.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62876.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 204 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 134/194 (69%), Positives = 162/194 (83%) Query: 4 RADKTRAILLDAALAAFARRGVRATTLEHVAASAAFTRGAVYWHFPDKLSLVNAVFDDLV 63 RAD+TRA+LLDAALAAFARRGVRATTLEHVAASAA TRGAVYWHFPDK +LV AVF+++ Sbjct: 3 RADQTRALLLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEMR 62 Query: 64 WPFDIGPELAVYRQSEQPLLLLREVLWLKLLDFLRNVQQRRRMEVVLRYRGTPELPEELG 123 WPF++G +L+ Y + PL LLREVLWL++ + +++QRRRME+VLRYRGTPELPEEL Sbjct: 63 WPFELGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEELS 122 Query: 124 ERIESLSLRALQHLTAALNIAYERGQLRRGLTPIDVARCLVAACMGVIAEHMEDPQARLE 183 R+E++ LRA+ LTA +NIAYERG LRRGLTPIDVAR +VAA +GVIAE+M+D QA E Sbjct: 123 LRLETMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVIAENMDDAQAAPE 182 Query: 184 HSFHLAPLLVLQGA 197 F+L P LVL GA Sbjct: 183 GYFYLTPGLVLVGA 196 >ref|NP_522377.1| transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD17967.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 219 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 95/167 (56%) Query: 8 TRAILLDAALAAFARRGVRATTLEHVAASAAFTRGAVYWHFPDKLSLVNAVFDDLVWPFD 67 TRA +++AA+ + RG+RA TL VAA A TRGAVY HFP K +LV A+ D L+WP D Sbjct: 12 TRARVIEAAIEVVSERGIRAATLADVAARAGVTRGAVYGHFPGKPALVAAIIDGLLWPLD 71 Query: 68 IGPELAVYRQSEQPLLLLREVLWLKLLDFLRNVQQRRRMEVVLRYRGTPELPEELGERIE 127 IG +LA YR +PL L L +L L+ QR + +VLR G P + Sbjct: 72 IGDDLAGYRAHPRPLRRLHAQLSAQLTRCLQTPAQRHVVTLVLRESGYLACPAASADHAM 131 Query: 128 SLSLRALQHLTAALNIAYERGQLRRGLTPIDVARCLVAACMGVIAEH 174 L +A+ L + +A +R QLR + P ARCL A +G+++EH Sbjct: 132 RLRDKAVASLGGVMGMARDRHQLRPDIEPDAAARCLHALGIGILSEH 178 >emb|CBJ40436.1| putative transcription regulator protein, TetR family [Ralstonia solanacearum CMR15] Length = 219 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 96/167 (57%) Query: 8 TRAILLDAALAAFARRGVRATTLEHVAASAAFTRGAVYWHFPDKLSLVNAVFDDLVWPFD 67 TRA +++AA+ + RG+RA TL VAA A TRGAVY HFP K +LV A+ D L+WP D Sbjct: 12 TRARVIEAAIEVVSERGIRAATLADVAARAGVTRGAVYGHFPGKPALVAAIIDGLLWPLD 71 Query: 68 IGPELAVYRQSEQPLLLLREVLWLKLLDFLRNVQQRRRMEVVLRYRGTPELPEELGERIE 127 IG +LA YR +PL L L +L L+ QR + +VLR G P ++ Sbjct: 72 IGDDLAGYRAHPRPLRRLHAQLSAQLTRCLQTPAQRHVVTLVLRESGYLACPAASADQAM 131 Query: 128 SLSLRALQHLTAALNIAYERGQLRRGLTPIDVARCLVAACMGVIAEH 174 L +A+ L + +A +R QLR + P ARCL A +G+++EH Sbjct: 132 RLRDKAVARLGGVMGMARDRHQLRPDIEPEAAARCLHALGIGILSEH 178 >gb|AEG71769.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 228 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 95/170 (55%) Query: 5 ADKTRAILLDAALAAFARRGVRATTLEHVAASAAFTRGAVYWHFPDKLSLVNAVFDDLVW 64 A +TRA +++AA F+ RG+RA TLE VAA A TRGAVY HF K LV A+ D L W Sbjct: 9 AAQTRARVIEAATEVFSERGLRAATLEDVAARAGVTRGAVYGHFSGKPLLVAAIIDGLRW 68 Query: 65 PFDIGPELAVYRQSEQPLLLLREVLWLKLLDFLRNVQQRRRMEVVLRYRGTPELPEELGE 124 P D+G +LA YR +PL LL L ++ L+ Q + + +VLR G P+ + Sbjct: 69 PLDVGEDLADYRSHPRPLRLLHAQLSAQMARCLQTPSQWQAVLLVLRESGYAAWPKASSD 128 Query: 125 RIESLSLRALQHLTAALNIAYERGQLRRGLTPIDVARCLVAACMGVIAEH 174 L +A+ L + +A ER QLR + P ARCL A +G++ H Sbjct: 129 HAMHLQEKAVTRLGDVMRLARERHQLRLDIEPDAAARCLHAVGIGILLGH 178 >ref|YP_002257563.1| hypothetical protein RSIPO_03871 [Ralstonia solanacearum IPO1609] emb|CAQ59449.1| hypothetical protein RSIPO_03871 [Ralstonia solanacearum IPO1609] Length = 230 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 91/170 (53%) Query: 5 ADKTRAILLDAALAAFARRGVRATTLEHVAASAAFTRGAVYWHFPDKLSLVNAVFDDLVW 64 A +TRA +++AA F+ RG+RA TLE VAA A TRGAVY HF K LV A+ D L W Sbjct: 9 AAQTRARVIEAATEVFSERGLRAATLEDVAARAGVTRGAVYGHFSGKPLLVAAIIDGLRW 68 Query: 65 PFDIGPELAVYRQSEQPLLLLREVLWLKLLDFLRNVQQRRRMEVVLRYRGTPELPEELGE 124 P D+G +LA Y +PL L L ++ + Q + + +VLR G P+ + Sbjct: 69 PLDVGEDLADYPSHPRPLRQLHVQLSAQMARCQQTPPQWQAVMLVLRESGYAAWPKASSD 128 Query: 125 RIESLSLRALQHLTAALNIAYERGQLRRGLTPIDVARCLVAACMGVIAEH 174 L A+ L + +A +R QLR + P ARCL A +G++ H Sbjct: 129 HALHLQENAVARLGDVMRLARQRHQLRLDIEPDAAARCLHAVGIGILLGH 178