BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1136.p (500 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774783.1| outer membrane drug efflux lipoprotein [Herb... 723 0.0 ref|ZP_00945940.1| Probable outer membrane drug efflux lipoprote... 588 e-166 ref|YP_003748074.1| outer membrane drug efflux lipoprotein [Rals... 582 e-164 gb|AEG71770.1| outer membrane chanel lipoprotein [Ralstonia sola... 579 e-163 emb|CAQ36716.1| outer membrane drug efflux lipoprotein [Ralstoni... 577 e-162 >ref|YP_003774783.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ62875.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] Length = 498 Score = 723 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 428/500 (85%), Positives = 461/500 (92%), Gaps = 2/500 (0%) Query: 1 MNPSLTHRAAHRPRALMTPLLLAMLLGGCTLMPDYQRPAAPVASQFAGDHSAAAASSTPA 60 M PSL+ R+ P +M P++LAMLLGGCTLMPDY RP APVA+ FAG S AA ++ A Sbjct: 1 MKPSLSTRSPVLP--MMLPVMLAMLLGGCTLMPDYHRPDAPVAAHFAGADSKNAAGASSA 58 Query: 61 MAVSDIGWRDVFTDPTLQEVISLSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAAT 120 V+DIGWRDVFTDP+LQ+VI+L+L NNRDLRVAVLNIEKARAQYGV+RAALFP+I AAT Sbjct: 59 PVVADIGWRDVFTDPSLQQVIALALENNRDLRVAVLNIEKARAQYGVQRAALFPSIKAAT 118 Query: 121 SESASRTPADLSATGRALTSRSYTATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRS 180 SE+ASRTP DLS+TG ALTSRSYTATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRS Sbjct: 119 SETASRTPGDLSSTGSALTSRSYTATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRS 178 Query: 181 TQISLIAEVATAWLTLASDQDRLRLAKDTLASQSSSYELTQRSFELGSSSALTLRQAQTS 240 TQISLIAEVATAWLTLASDQDRLRLA+DTL SQSSSY LTQRSFELGSSSALTLRQAQTS Sbjct: 179 TQISLIAEVATAWLTLASDQDRLRLAQDTLESQSSSYALTQRSFELGSSSALTLRQAQTS 238 Query: 241 VESARVDVESYTAQVDQDRNALVLLVGKDLPDRLLPQGLPDTALAAASPLATIPPGLPSD 300 VESARVDVESYTAQVDQDRNALVLLVGKDLP LLPQGLPDT LAAASPLATIPPGLPSD Sbjct: 239 VESARVDVESYTAQVDQDRNALVLLVGKDLPTALLPQGLPDTRLAAASPLATIPPGLPSD 298 Query: 301 LLQRRADIVEAERTLRAANANIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFV 360 LLQRRADIV+AER LRAANANIGAARAAFYPSI+LT +AGTASARLAGLFKGGSGSWSFV Sbjct: 299 LLQRRADIVQAERDLRAANANIGAARAAFYPSITLTVNAGTASARLAGLFKGGSGSWSFV 358 Query: 361 PQISLPIFDGGANQANLDIATISRDISVAQYEKAIQTAFQEVSDALAQRNTLGRQLKAQE 420 PQISLPIFDGGANQANLDIAT+SRDISVAQYEKAIQTAF+EVSDALAQRNTLGRQL+AQE Sbjct: 359 PQISLPIFDGGANQANLDIATVSRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLQAQE 418 Query: 421 DLVDASDASYRLSQARFNNGVDSYLTVLDSQRTLYSAQKTLIGTRLSRWTNLVTFYKALG 480 LV ASD ++RLSQAR+++GVDSYLTVLDSQRTLYSAQK LIGT+LSRWTNLVTFYK LG Sbjct: 419 ALVQASDEAFRLSQARYHSGVDSYLTVLDSQRTLYSAQKNLIGTQLSRWTNLVTFYKTLG 478 Query: 481 GGWVERSGSPVAGDLATAAP 500 GGWVER+G+P A D+AT P Sbjct: 479 GGWVERTGTPAASDIATQEP 498 >ref|ZP_00945940.1| Probable outer membrane drug efflux lipoprotein [Ralstonia solanacearum UW551] ref|YP_002257564.1| outer membrane drug efflux lipoprotein [Ralstonia solanacearum IPO1609] gb|EAP71597.1| Probable outer membrane drug efflux lipoprotein [Ralstonia solanacearum UW551] emb|CAQ59450.1| outer membrane drug efflux lipoprotein [Ralstonia solanacearum IPO1609] Length = 501 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 353/492 (71%), Positives = 409/492 (83%), Gaps = 12/492 (2%) Query: 18 TPLLLAMLLGGCTLMPDYQRPAAPVASQFAGDHSAAAASST------------PAMAVSD 65 T L LA +L GCTLMP YQRPA PV + FA + AS T PA V+D Sbjct: 7 TVLALAAMLAGCTLMPTYQRPATPVPAAFADASDKSDASDTSGERGNTGGDTRPAGPVAD 66 Query: 66 IGWRDVFTDPTLQEVISLSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAATSESAS 125 IGW DVFTDP+LQ VI ++LANNRDLRVAVLNIEKARAQY V+ AALFPT+ A+ SE+AS Sbjct: 67 IGWHDVFTDPSLQRVIGMALANNRDLRVAVLNIEKARAQYRVQDAALFPTVKASGSENAS 126 Query: 126 RTPADLSATGRALTSRSYTATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISL 185 RTPA LSATG+ L + SY+ATLGFSAYELDLFGRVRSL QAL+ +LST EARRS+QISL Sbjct: 127 RTPATLSATGQPLVAHSYSATLGFSAYELDLFGRVRSLNAQALEQYLSTVEARRSSQISL 186 Query: 186 IAEVATAWLTLASDQDRLRLAKDTLASQSSSYELTQRSFELGSSSALTLRQAQTSVESAR 245 IAEVATA+LTLA+DQD L+LA+DTL+SQS +Y L QRS+ELG++S LTLRQ+QTSV+SAR Sbjct: 187 IAEVATAYLTLAADQDLLKLAQDTLSSQSDTYRLNQRSYELGTASRLTLRQSQTSVDSAR 246 Query: 246 VDVESYTAQVDQDRNALVLLVGKDLPDRLLPQGLPDTALAAASPLATIPPGLPSDLLQRR 305 VDVE YTAQV QDRNALVLLVG DLP LLP+ LPD++ A S LATIPPGL SDLLQRR Sbjct: 247 VDVERYTAQVAQDRNALVLLVGADLPAELLPRSLPDSSAATGSVLATIPPGLTSDLLQRR 306 Query: 306 ADIVEAERTLRAANANIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFVPQISL 365 DI++AE L+AANANIGAARAAF+PSISLTA AGT+SA LAGLFKGGSG+W+F PQI+L Sbjct: 307 PDILQAEHDLKAANANIGAARAAFFPSISLTASAGTSSASLAGLFKGGSGAWNFGPQIAL 366 Query: 366 PIFDGGANQANLDIATISRDISVAQYEKAIQTAFQEVSDALAQRNTLGRQLKAQEDLVDA 425 PIFDGGAN+ANLD+A SRDI+VAQYEKAIQTAF+EVSDALAQR TLGRQ++AQ+ LVDA Sbjct: 367 PIFDGGANRANLDVANTSRDIAVAQYEKAIQTAFREVSDALAQRGTLGRQIEAQQSLVDA 426 Query: 426 SDASYRLSQARFNNGVDSYLTVLDSQRTLYSAQKTLIGTRLSRWTNLVTFYKALGGGWVE 485 + SY+L+ ARF GVDSYL VLDSQR+LY+AQ+ LI TRLSR+TNLVTFYK LGGGWVE Sbjct: 427 TADSYQLATARFKRGVDSYLNVLDSQRSLYTAQQNLINTRLSRFTNLVTFYKTLGGGWVE 486 Query: 486 RSGSPVAGDLAT 497 +G+PVA +T Sbjct: 487 TTGTPVAAARST 498 >ref|YP_003748074.1| outer membrane drug efflux lipoprotein [Ralstonia solanacearum CFBP2957] emb|CBJ53682.1| outer membrane drug efflux lipoprotein [Ralstonia solanacearum CFBP2957] Length = 504 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 347/482 (71%), Positives = 403/482 (83%), Gaps = 12/482 (2%) Query: 28 GCTLMPDYQRPAAPVASQFAGDHSAAAAS------------STPAMAVSDIGWRDVFTDP 75 GCTLMP YQRPAAPV + FAG + AS + P V+DIGWRDVFTDP Sbjct: 20 GCTLMPTYQRPAAPVPATFAGTSDKSDASDASGERGNTGGDARPVGPVADIGWRDVFTDP 79 Query: 76 TLQEVISLSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAATSESASRTPADLSATG 135 +LQ VI ++LANNRDLRVAVLNIEKARAQY V+ AALFPT+ A+ SESASRTPA LS TG Sbjct: 80 SLQRVIGMALANNRDLRVAVLNIEKARAQYRVQDAALFPTVKASGSESASRTPATLSTTG 139 Query: 136 RALTSRSYTATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATAWLT 195 + L + SY+ATLGFSAYELDLFGRVRSL QAL+ +LST EARRS+QISLIAEVATA+LT Sbjct: 140 QPLVAHSYSATLGFSAYELDLFGRVRSLSAQALEQYLSTVEARRSSQISLIAEVATAYLT 199 Query: 196 LASDQDRLRLAKDTLASQSSSYELTQRSFELGSSSALTLRQAQTSVESARVDVESYTAQV 255 LA+DQD L+LA+DTL+SQS +Y L QRS+ELG++S LTLRQ+QTSV++ARVDVE YTAQV Sbjct: 200 LAADQDLLKLAQDTLSSQSDTYRLNQRSYELGTASRLTLRQSQTSVDAARVDVERYTAQV 259 Query: 256 DQDRNALVLLVGKDLPDRLLPQGLPDTALAAASPLATIPPGLPSDLLQRRADIVEAERTL 315 QDRNALVLLVG DLP LLP LPD++ AA S LATIPPGL S+LLQRR DI++AE L Sbjct: 260 AQDRNALVLLVGADLPAELLPGSLPDSSAAAGSLLATIPPGLTSNLLQRRPDILQAEHDL 319 Query: 316 RAANANIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFVPQISLPIFDGGANQA 375 +AANANIGAARAAF+PSISLTA AGT+SA LAGLFKGGSG+W+F PQI+LPIFDGGAN+A Sbjct: 320 KAANANIGAARAAFFPSISLTASAGTSSASLAGLFKGGSGAWNFGPQIALPIFDGGANRA 379 Query: 376 NLDIATISRDISVAQYEKAIQTAFQEVSDALAQRNTLGRQLKAQEDLVDASDASYRLSQA 435 NLD+A SRDI+VAQYEKAIQTAF+EVSDALAQR TLGRQ++AQ+ LV+A+ SY+L+ A Sbjct: 380 NLDVANTSRDIAVAQYEKAIQTAFREVSDALAQRGTLGRQIEAQQSLVEATADSYQLATA 439 Query: 436 RFNNGVDSYLTVLDSQRTLYSAQKTLIGTRLSRWTNLVTFYKALGGGWVERSGSPVAGDL 495 RF GVDSYL VLDSQR+LY+AQ+ LI TRLSR TNLVTFYK LGGGWVE +G+PVA Sbjct: 440 RFKRGVDSYLNVLDSQRSLYTAQQNLINTRLSRLTNLVTFYKTLGGGWVETTGTPVAAAQ 499 Query: 496 AT 497 +T Sbjct: 500 ST 501 >gb|AEG71770.1| outer membrane chanel lipoprotein [Ralstonia solanacearum Po82] Length = 498 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 352/489 (71%), Positives = 410/489 (83%), Gaps = 9/489 (1%) Query: 18 TPLLLAMLLGGCTLMPDYQRPAAPVA---------SQFAGDHSAAAASSTPAMAVSDIGW 68 T L LA +L GCTLMP YQRPAAPV S+ +G+ + PA V+DIGW Sbjct: 7 TVLALAAMLAGCTLMPTYQRPAAPVPAAFAGASDTSEASGERGNTGGDTRPAGPVADIGW 66 Query: 69 RDVFTDPTLQEVISLSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAATSESASRTP 128 RDVFTDP+LQ VI ++LANNRDLRVAVLNIEKARAQY V+ AALFPT+ A+ SE+ASRTP Sbjct: 67 RDVFTDPSLQRVIGMALANNRDLRVAVLNIEKARAQYRVQDAALFPTVKASGSENASRTP 126 Query: 129 ADLSATGRALTSRSYTATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAE 188 A LSATG+ L + SY+ATLGFSAYELDLFGRVRSL QAL+ +LST EARRS+QISLIAE Sbjct: 127 AALSATGQPLVAHSYSATLGFSAYELDLFGRVRSLSAQALEQYLSTVEARRSSQISLIAE 186 Query: 189 VATAWLTLASDQDRLRLAKDTLASQSSSYELTQRSFELGSSSALTLRQAQTSVESARVDV 248 VATA+LTLA+DQD L+LA+DTL+SQS +Y L QRS+ELG++S LTLRQ+QTSV+SARVDV Sbjct: 187 VATAYLTLAADQDLLKLAQDTLSSQSDTYRLNQRSYELGTASRLTLRQSQTSVDSARVDV 246 Query: 249 ESYTAQVDQDRNALVLLVGKDLPDRLLPQGLPDTALAAASPLATIPPGLPSDLLQRRADI 308 E YTAQV QDRNALVLLVG DLP LLP+ LPD++ A S LATIPPGL SDLLQRR DI Sbjct: 247 ERYTAQVAQDRNALVLLVGADLPTELLPRSLPDSSAATGSLLATIPPGLTSDLLQRRPDI 306 Query: 309 VEAERTLRAANANIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFVPQISLPIF 368 ++AE L+AANANIGAARAAF+PSISLTA AGT+SA LAGLFKGGSG+W+F PQI+LPIF Sbjct: 307 LQAEHDLKAANANIGAARAAFFPSISLTASAGTSSASLAGLFKGGSGAWNFGPQIALPIF 366 Query: 369 DGGANQANLDIATISRDISVAQYEKAIQTAFQEVSDALAQRNTLGRQLKAQEDLVDASDA 428 DGGAN+ANLD+A SRDI+VAQYEKAIQTAF+EVSDALAQR TLGRQ++AQ+ LVDA+ Sbjct: 367 DGGANRANLDMANTSRDIAVAQYEKAIQTAFREVSDALAQRGTLGRQIEAQQSLVDATAD 426 Query: 429 SYRLSQARFNNGVDSYLTVLDSQRTLYSAQKTLIGTRLSRWTNLVTFYKALGGGWVERSG 488 SY+L+ ARF GVDSYL VLDSQR+LY+AQ+ LI TRLSR+TNLVTFYK LGGGWVE +G Sbjct: 427 SYQLATARFKRGVDSYLNVLDSQRSLYTAQQNLINTRLSRFTNLVTFYKTLGGGWVETTG 486 Query: 489 SPVAGDLAT 497 +PVA +T Sbjct: 487 APVAAARST 495 >emb|CAQ36716.1| outer membrane drug efflux lipoprotein [Ralstonia solanacearum MolK2] Length = 501 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 355/492 (72%), Positives = 411/492 (83%), Gaps = 12/492 (2%) Query: 18 TPLLLAMLLGGCTLMPDYQRPAAPVASQFAGDHSAAAASST------------PAMAVSD 65 T L LA +L GCTLMP YQRPAAPV + FAG + AS T PA V+D Sbjct: 7 TVLALAAMLAGCTLMPTYQRPAAPVPAAFAGASDKSDASDTSRERGNTGGDARPAGPVAD 66 Query: 66 IGWRDVFTDPTLQEVISLSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAATSESAS 125 IGW DVFTDP+LQ VI ++LANNRDLRVAVLNIEKARAQY V+ AALFPT+ A+ SE+AS Sbjct: 67 IGWHDVFTDPSLQRVIGMALANNRDLRVAVLNIEKARAQYRVQDAALFPTVKASGSENAS 126 Query: 126 RTPADLSATGRALTSRSYTATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISL 185 RTPA LSATG+ L + SY+ATLGFSAYELDLFGRVRSL QAL+ +LST EARRS+QISL Sbjct: 127 RTPAGLSATGQPLVAHSYSATLGFSAYELDLFGRVRSLSAQALEQYLSTVEARRSSQISL 186 Query: 186 IAEVATAWLTLASDQDRLRLAKDTLASQSSSYELTQRSFELGSSSALTLRQAQTSVESAR 245 IAEVATA+LTLA+DQD L+LA+DTL+SQS +Y L QRS+ELG++S LTLRQ+QTSV+SAR Sbjct: 187 IAEVATAYLTLAADQDLLKLAQDTLSSQSDTYRLNQRSYELGTASRLTLRQSQTSVDSAR 246 Query: 246 VDVESYTAQVDQDRNALVLLVGKDLPDRLLPQGLPDTALAAASPLATIPPGLPSDLLQRR 305 VDVE YTAQV QDRNALVLLVG DLP LLP+ LPD++ A S LATIPPGL SDLLQRR Sbjct: 247 VDVERYTAQVAQDRNALVLLVGADLPTELLPRSLPDSSAATGSVLATIPPGLTSDLLQRR 306 Query: 306 ADIVEAERTLRAANANIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFVPQISL 365 DI++AE L+AANANIGAARAAF+PSISLTA AGT+SA LAGLFKGGSG+W+F PQI+L Sbjct: 307 PDILQAEHDLKAANANIGAARAAFFPSISLTASAGTSSASLAGLFKGGSGAWNFGPQIAL 366 Query: 366 PIFDGGANQANLDIATISRDISVAQYEKAIQTAFQEVSDALAQRNTLGRQLKAQEDLVDA 425 PIFDGGAN+ANLD+A SRDI+VAQYEKAIQTAF+EVSDALAQR TLGRQ++AQ+ LVDA Sbjct: 367 PIFDGGANRANLDVANTSRDIAVAQYEKAIQTAFREVSDALAQRGTLGRQIEAQQSLVDA 426 Query: 426 SDASYRLSQARFNNGVDSYLTVLDSQRTLYSAQKTLIGTRLSRWTNLVTFYKALGGGWVE 485 + SY+L+ ARF GVDSYL VLDSQR+LY+AQ+ LI TRLSR+TNLVTFYK LGGGWVE Sbjct: 427 TADSYQLATARFKRGVDSYLNVLDSQRSLYTAQQNLINTRLSRFTNLVTFYKTLGGGWVE 486 Query: 486 RSGSPVAGDLAT 497 +G+PVA +T Sbjct: 487 TTGAPVAAARST 498