BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1134.p (394 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774781.1| RND family efflux transporter MFP subunit [H... 608 e-172 ref|NP_638031.1| multidrug resistance protein [Xanthomonas campe... 422 e-116 ref|YP_001902885.1| membrane fusion subunit of an RND superfamil... 420 e-115 ref|YP_003749731.1| multidrug resistance protein [Ralstonia sola... 412 e-113 ref|ZP_00945938.1| Probable drug efflux lipoprotein [Ralstonia s... 405 e-111 >ref|YP_003774781.1| RND family efflux transporter MFP subunit [Herbaspirillum seropedicae SmR1] gb|ADJ62873.1| efflux transporter, RND family, MFP subunit protein [Herbaspirillum seropedicae SmR1] Length = 400 Score = 608 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 358/385 (92%), Positives = 375/385 (97%), Gaps = 3/385 (0%) Query: 1 MRTTPLLRPVAAL---AILSVLSACGKPPGGPPPAAGTPVLGVMTVRAQPVELHTELPGR 57 MRT P+ +PVAAL AILSVLSACGKPPGG PPAAGTPVLGV+TV AQPVELHTELPGR Sbjct: 1 MRTPPIPKPVAALTALAILSVLSACGKPPGGAPPAAGTPVLGVVTVHAQPVELHTELPGR 60 Query: 58 TSPYQIADVRPQVNGIIKARNFREGSDVKAGQVLYQINPASYQAAYDSSVAALAKAEASV 117 TSPYQIADVRPQVNGIIKAR+FREGSDVKAGQVLYQINPASYQAAYDSSVAALAKAEASV Sbjct: 61 TSPYQIADVRPQVNGIIKARSFREGSDVKAGQVLYQINPASYQAAYDSSVAALAKAEASV 120 Query: 118 KTARLKASRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYAKVDAP 177 +TARLKASRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYA++DAP Sbjct: 121 RTARLKASRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYARLDAP 180 Query: 178 ISGRIGKSSVTPGALVTASQTTALTTIQQLDPIYVDVTQSSTNWLNLKEALANGELQKSG 237 ISGRIGKSSVTPGALVTA+QTTALTTIQQLDPIYVDVTQSST WLNLKEALANG+L+KSG Sbjct: 181 ISGRIGKSSVTPGALVTANQTTALTTIQQLDPIYVDVTQSSTTWLNLKEALANGQLEKSG 240 Query: 238 NGAKVRLILENGRTYAQEGTLQFSDVTVNQDTGAITLRAVFPNPKTDLLPGMYVRAVLQE 297 NGAKVRL+LENGRTYAQEGTLQFSDVTVNQDTGAITLRA+FPNPKTDLLPGMYVRAVLQE Sbjct: 241 NGAKVRLVLENGRTYAQEGTLQFSDVTVNQDTGAITLRAIFPNPKTDLLPGMYVRAVLQE 300 Query: 298 GVRQQGLLVPQQAVSRDGAGKPVAFVVNAEGVVEQRALVTDRAIGSQWLVSSGLKEGDQL 357 GVRQQGLLVPQQAVSRDGAGKPVAFVVNA+GVVEQRALVTDRAIG QWLVSSGLKEGDQL Sbjct: 301 GVRQQGLLVPQQAVSRDGAGKPVAFVVNAQGVVEQRALVTDRAIGDQWLVSSGLKEGDQL 360 Query: 358 VVDGQQRATAGAKVKVVPWSPKTTV 382 VVDGQQRA+AGAKVKVVPW+PK ++ Sbjct: 361 VVDGQQRASAGAKVKVVPWTPKASL 385 >ref|NP_638031.1| multidrug resistance protein [Xanthomonas campestris pv. campestris str. ATCC 33913] ref|YP_242520.1| multidrug resistance protein [Xanthomonas campestris pv. campestris str. 8004] gb|AAM41955.1| multidrug resistance protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAY48500.1| multidrug resistance protein [Xanthomonas campestris pv. campestris str. 8004] gb|AEL07905.1| multidrug resistance protein [Xanthomonas campestris pv. raphani 756C] Length = 399 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 257/387 (66%), Positives = 315/387 (81%), Gaps = 2/387 (0%) Query: 1 MRTTPLLR-PVAALAILSVLSACGKPPGGPPPAAGTPVLGVMTVRAQPVELHTELPGRTS 59 MR P LR P+ A+A ++SACG PPGGPPP GTPV+GV+TVR QPV L T+LPGRT Sbjct: 1 MRPVPSLRLPLLAVAASVLISACGSPPGGPPPQQGTPVVGVITVRPQPVTLTTQLPGRTV 60 Query: 60 PYQIADVRPQVNGIIKARNFREGSDVKAGQVLYQINPASYQAAYDSSVAALAKAEASVKT 119 PY IA+VRPQV GI++ R F EG DVKAGQ LYQI+PA+Y+A+Y S+ A LAKA+A+++T Sbjct: 61 PYLIAEVRPQVGGIVQTRQFTEGGDVKAGQTLYQIDPATYRASYASAQATLAKAQANLRT 120 Query: 120 ARLKASRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYAKVDAPIS 179 ARLKA RYKELV IKA+SQQ+ DD A+LG+AEADV + +A+V+T+RINL +A++DAPIS Sbjct: 121 ARLKADRYKELVQIKAISQQEGDDTAATLGQAEADVAAGKASVETARINLAFARMDAPIS 180 Query: 180 GRIGKSSVTPGALVTASQTTALTTIQQLDPIYVDVTQSSTNWLNLKEALANGELQKSGNG 239 GRIG+SSVTPGALVTA+Q TALTTIQQLDPIYVDVTQ S L LK+A+A G+L ++G+G Sbjct: 181 GRIGRSSVTPGALVTANQATALTTIQQLDPIYVDVTQPSAAVLRLKKAMARGDLARAGDG 240 Query: 240 -AKVRLILENGRTYAQEGTLQFSDVTVNQDTGAITLRAVFPNPKTDLLPGMYVRAVLQEG 298 A+V L+LE+G TY +G L FSDVTV+Q+TG+I+LRAVFPNP DLLPGMYVRAVLQEG Sbjct: 241 AAQVSLVLEDGSTYPLQGRLAFSDVTVDQNTGSISLRAVFPNPDADLLPGMYVRAVLQEG 300 Query: 299 VRQQGLLVPQQAVSRDGAGKPVAFVVNAEGVVEQRALVTDRAIGSQWLVSSGLKEGDQLV 358 V+ QG+LVPQQAV+R+GAGKP AFVV A+ ++ R L TDRA+G QWLV SGLK GDQLV Sbjct: 301 VKAQGVLVPQQAVTRNGAGKPTAFVVGADNKLQLRVLETDRAVGDQWLVRSGLKTGDQLV 360 Query: 359 VDGQQRATAGAKVKVVPWSPKTTVVSA 385 VDG RA G +VK VPW P + V+ Sbjct: 361 VDGLSRARDGVQVKTVPWQPTSASVAG 387 >ref|YP_001902885.1| membrane fusion subunit of an RND superfamily export system [Xanthomonas campestris pv. campestris str. B100] emb|CAP50829.1| membrane fusion subunit of an RND superfamily export system [Xanthomonas campestris pv. campestris] Length = 399 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 256/387 (66%), Positives = 315/387 (81%), Gaps = 2/387 (0%) Query: 1 MRTTPLLR-PVAALAILSVLSACGKPPGGPPPAAGTPVLGVMTVRAQPVELHTELPGRTS 59 MR P LR P+ A+A ++SACG PPGGPPP GTPV+GV+TVR QPV L T++PGRT Sbjct: 1 MRPVPSLRLPLLAVAASVLISACGSPPGGPPPQQGTPVVGVITVRPQPVTLTTQVPGRTV 60 Query: 60 PYQIADVRPQVNGIIKARNFREGSDVKAGQVLYQINPASYQAAYDSSVAALAKAEASVKT 119 PY IA+VRPQV GI++ R F EG DVKAGQ LYQI+PA+Y+A+Y S+ A LAKA+A+++T Sbjct: 61 PYLIAEVRPQVGGIVQTRQFTEGGDVKAGQTLYQIDPATYRASYASAQATLAKAQANLRT 120 Query: 120 ARLKASRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYAKVDAPIS 179 ARLKA RYKELV IKA+SQQ+ DD A+LG+AEADV + +A+V+T+RINL +A++DAPIS Sbjct: 121 ARLKADRYKELVQIKAISQQEGDDTAATLGQAEADVAAGKASVETARINLAFARMDAPIS 180 Query: 180 GRIGKSSVTPGALVTASQTTALTTIQQLDPIYVDVTQSSTNWLNLKEALANGELQKSGNG 239 GRIG+SSVTPGALVTA+Q TALTTIQQLDPIYVDVTQ S L LK+A+A G+L ++G+G Sbjct: 181 GRIGRSSVTPGALVTANQATALTTIQQLDPIYVDVTQPSAAVLRLKKAMARGDLARAGDG 240 Query: 240 -AKVRLILENGRTYAQEGTLQFSDVTVNQDTGAITLRAVFPNPKTDLLPGMYVRAVLQEG 298 A+V L+LE+G TY +G L FSDVTV+Q+TG+I+LRAVFPNP DLLPGMYVRAVLQEG Sbjct: 241 AAQVSLVLEDGSTYPLQGRLAFSDVTVDQNTGSISLRAVFPNPDADLLPGMYVRAVLQEG 300 Query: 299 VRQQGLLVPQQAVSRDGAGKPVAFVVNAEGVVEQRALVTDRAIGSQWLVSSGLKEGDQLV 358 V+ QG+LVPQQAV+R+GAGKP AFVV A+ ++ R L TDRA+G QWLV SGLK GDQLV Sbjct: 301 VKAQGVLVPQQAVTRNGAGKPTAFVVGADNKLQLRVLETDRAVGDQWLVRSGLKTGDQLV 360 Query: 359 VDGQQRATAGAKVKVVPWSPKTTVVSA 385 VDG RA G +VK VPW P + V+ Sbjct: 361 VDGLSRARDGVQVKTVPWQPTSASVAG 387 >ref|YP_003749731.1| multidrug resistance protein [Ralstonia solanacearum PSI07] emb|CBJ35101.1| Multidrug resistance protein [Ralstonia solanacearum PSI07] emb|CCA83433.1| multidrug resistance protein [blood disease bacterium R229] Length = 409 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 272/382 (71%), Positives = 320/382 (83%), Gaps = 3/382 (0%) Query: 1 MRTTPLLRP--VAALAILSVLSACGKPPGGPPPAAGTPVLGVMTVRAQPVELHTELPGRT 58 MR P +R +AALA S+L+ACGKPPGGPPPA GTPV+GVMTV+ Q V L TELPGRT Sbjct: 1 MRPIPHVRSPLLAALAAASLLAACGKPPGGPPPAEGTPVVGVMTVQPQRVTLDTELPGRT 60 Query: 59 SPYQIADVRPQVNGIIKARNFREGSDVKAGQVLYQINPASYQAAYDSSVAALAKAEASVK 118 P+ +ADVRPQVNGIIKAR FREGSDVKAG+ LYQI+PA+YQAAYDS+VAALAKA+A++K Sbjct: 61 VPFLVADVRPQVNGIIKARKFREGSDVKAGEALYQIDPATYQAAYDSNVAALAKAQANLK 120 Query: 119 TARLKASRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYAKVDAPI 178 T RLKA RYKELVAI+AVSQQDYDDA A+L + EADV +ARANV+TSRINL YA+VDAPI Sbjct: 121 TTRLKAERYKELVAIQAVSQQDYDDAAAALAQGEADVAAARANVETSRINLAYARVDAPI 180 Query: 179 SGRIGKSSVTPGALVTASQTTALTTIQQLDPIYVDVTQSSTNWLNLKEALANGELQKSG- 237 SGRIGKSSVTPGALVTA+QT +LTTIQQLDPIYVDVTQ S L L++A+A+G+LQKSG Sbjct: 181 SGRIGKSSVTPGALVTANQTNSLTTIQQLDPIYVDVTQPSAALLRLRQAMAHGDLQKSGA 240 Query: 238 NGAKVRLILENGRTYAQEGTLQFSDVTVNQDTGAITLRAVFPNPKTDLLPGMYVRAVLQE 297 N A V+L+LE+G TY EG L FSDVTV+Q+TG++TLRAVFPNP LLPGMYVRAVLQE Sbjct: 241 NAATVQLLLEDGSTYPLEGKLTFSDVTVDQNTGSVTLRAVFPNPNAILLPGMYVRAVLQE 300 Query: 298 GVRQQGLLVPQQAVSRDGAGKPVAFVVNAEGVVEQRALVTDRAIGSQWLVSSGLKEGDQL 357 GV+ + LLVPQQAV+RD GKP A+VV + +++RAL T+R +G QWLV SGL+ GDQL Sbjct: 301 GVKDEALLVPQQAVARDSTGKPFAYVVGGDRKLQRRALETERTVGDQWLVRSGLQAGDQL 360 Query: 358 VVDGQQRATAGAKVKVVPWSPK 379 VVDG RA GA+VK PW+ K Sbjct: 361 VVDGLPRAVPGAEVKTTPWTGK 382 >ref|ZP_00945938.1| Probable drug efflux lipoprotein [Ralstonia solanacearum UW551] ref|YP_002257566.1| drug efflux lipoprotein [Ralstonia solanacearum IPO1609] gb|EAP71595.1| Probable drug efflux lipoprotein [Ralstonia solanacearum UW551] emb|CAQ59452.1| drug efflux lipoprotein [Ralstonia solanacearum IPO1609] Length = 409 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 268/387 (69%), Positives = 320/387 (82%), Gaps = 3/387 (0%) Query: 1 MRTTPL--LRPVAALAILSVLSACGKPPGGPPPAAGTPVLGVMTVRAQPVELHTELPGRT 58 MR+ P +AALA S+L+ACGKPPGGPPPA GTPV+GVMTV+ Q V L TELPGRT Sbjct: 1 MRSIPHALPPLLAALAAASLLAACGKPPGGPPPAEGTPVVGVMTVQPQRVTLDTELPGRT 60 Query: 59 SPYQIADVRPQVNGIIKARNFREGSDVKAGQVLYQINPASYQAAYDSSVAALAKAEASVK 118 PY +ADVRPQVNGIIKAR FREGSDVKAG+ LYQI+PA+YQAAYDS+VAALAKA+A++K Sbjct: 61 VPYLVADVRPQVNGIIKARRFREGSDVKAGEALYQIDPATYQAAYDSNVAALAKAQANLK 120 Query: 119 TARLKASRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYAKVDAPI 178 + RLKA RYKELVAI+AVS+QDYDDA A+L + EADV +ARANV+TSRINL YA+VDAPI Sbjct: 121 STRLKAERYKELVAIQAVSRQDYDDAAAALAQGEADVAAARANVETSRINLAYARVDAPI 180 Query: 179 SGRIGKSSVTPGALVTASQTTALTTIQQLDPIYVDVTQSSTNWLNLKEALANGELQKSG- 237 SGRIG+SSVTPGALVTA+QTT+L T+QQLDPIYVDVTQ S L L++A+A G+LQKSG Sbjct: 181 SGRIGRSSVTPGALVTANQTTSLATVQQLDPIYVDVTQPSAALLRLRQAMARGDLQKSGA 240 Query: 238 NGAKVRLILENGRTYAQEGTLQFSDVTVNQDTGAITLRAVFPNPKTDLLPGMYVRAVLQE 297 N A V+L+LE+G TY G L+FSDVTV+Q+TG++TLRAVFPNP LLPGMYVRAVLQE Sbjct: 241 NAAAVQLLLEDGSTYPLAGKLEFSDVTVDQNTGSVTLRAVFPNPNAILLPGMYVRAVLQE 300 Query: 298 GVRQQGLLVPQQAVSRDGAGKPVAFVVNAEGVVEQRALVTDRAIGSQWLVSSGLKEGDQL 357 GV+ + LLVPQQAV+RD GKP A+VV + +++RAL T+R +G QWLV SGL+ GDQL Sbjct: 301 GVKDEALLVPQQAVARDSTGKPFAYVVGGDRKLQRRALETERTVGDQWLVRSGLRVGDQL 360 Query: 358 VVDGQQRATAGAKVKVVPWSPKTTVVS 384 VV+G RA GA+VK PW+ KT S Sbjct: 361 VVEGLPRAVPGAEVKTTPWTGKTATSS 387