BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1133.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774780.1| transcription regulator protein [Herbaspiril... 284 6e-75 ref|ZP_08183598.1| transcriptional regulator [Xanthomonas gardne... 182 3e-44 ref|ZP_08178806.1| transcriptional regulator [Xanthomonas vesica... 179 3e-43 ref|ZP_06486233.1| transcriptional regulator [Xanthomonas campes... 177 8e-43 ref|NP_638032.1| transcriptional regulator [Xanthomonas campestr... 171 8e-41 >ref|YP_003774780.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62872.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 201 Score = 284 bits (726), Expect = 6e-75, Method: Composition-based stats. Identities = 156/200 (78%), Positives = 178/200 (89%) Query: 1 MRVKTEAKREAILAVAAEVFKEMGFEGASMAEISARIGGSKGTLYAYFKSKEELFVGVMH 60 MRVKT +R+AILA AAEVF E GFEGASMA ISARIGGSKGTLY+YFKSKEELFV V H Sbjct: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 Query: 61 QEAKKEIEPAFDALDNQRGDLETTLRMFGEKAVSFLCQTSSLQTHRMIVAEAGRSDIGRR 120 ++AKK++EPA AL+ GDL+ TL++FGEKAVSFLCQ S+LQTHRMIVAE+GRSDIGRR Sbjct: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 Query: 121 FHEEGPKQGLQRMAAFMKKQMDAGKLRQGDPMLATRQLWALLDCETVKPMMLGLETSISR 180 FHE GPK G++R+AAF+ +QM AG+L+Q DPMLAT QL ALLDCETVKPMMLGLE++ISR Sbjct: 121 FHESGPKLGMERIAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 Query: 181 PRMKRMVGRAVETFLAAYAV 200 PRMKRMVGRAVETFLAAYAV Sbjct: 181 PRMKRMVGRAVETFLAAYAV 200 >ref|ZP_08183598.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gb|EGD18771.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 206 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 95/199 (47%), Positives = 131/199 (65%) Query: 1 MRVKTEAKREAILAVAAEVFKEMGFEGASMAEISARIGGSKGTLYAYFKSKEELFVGVMH 60 MRV+TE KR+AI+ A+EVF E+GFEGASM++I+AR+GGSK TLY YF SKEELF+ Sbjct: 1 MRVRTEEKRDAIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFPSKEELFIAFAQ 60 Query: 61 QEAKKEIEPAFDALDNQRGDLETTLRMFGEKAVSFLCQTSSLQTHRMIVAEAGRSDIGRR 120 + I+P DAL G + TL+ FGE + FLC SS+ + I+ +GRSD+G Sbjct: 61 DTSDSYIDPMLDALTRSSGPVSQTLQRFGEDLLGFLCAPSSITIWQTIIGVSGRSDVGAL 120 Query: 121 FHEEGPKQGLQRMAAFMKKQMDAGKLRQGDPMLATRQLWALLDCETVKPMMLGLETSISR 180 F GP++G+QRMA ++++QMD G +R+GD LA +QL ALL+ +T+ P + G S Sbjct: 121 FFNAGPEEGMQRMAEYLQQQMDLGLMRRGDATLAAKQLGALLEAQTLMPCLFGALKDPSP 180 Query: 181 PRMKRMVGRAVETFLAAYA 199 ++ RAVE FLA Y Sbjct: 181 EYLRDATQRAVELFLAGYG 199 >ref|ZP_08178806.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gb|EGD08943.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 206 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 96/202 (47%), Positives = 134/202 (66%) Query: 1 MRVKTEAKREAILAVAAEVFKEMGFEGASMAEISARIGGSKGTLYAYFKSKEELFVGVMH 60 MRV+TEAKR+AI+ A+EVF EMGFEGASM++I+AR+GGSK TLY YF SKEELFV V Sbjct: 1 MRVRTEAKRDAIIEAASEVFLEMGFEGASMSQIAARVGGSKRTLYGYFPSKEELFVAVAT 60 Query: 61 QEAKKEIEPAFDALDNQRGDLETTLRMFGEKAVSFLCQTSSLQTHRMIVAEAGRSDIGRR 120 A IEP AL++ +E L FG ++FLC +S+ + I+ +GRS++G Sbjct: 61 AMADSYIEPLIVALESTDAPVEQALHTFGRDILTFLCAPTSITIWQTIIGVSGRSEVGAL 120 Query: 121 FHEEGPKQGLQRMAAFMKKQMDAGKLRQGDPMLATRQLWALLDCETVKPMMLGLETSISR 180 F+ GP++G++R+A ++ +QM+ G LR+ DP+ A+RQ LL +T+ P + G S Sbjct: 121 FYNSGPEEGMRRVAEYLSRQMEQGVLRRADPIDASRQFGGLLQADTMMPCLFGALKDPSP 180 Query: 181 PRMKRMVGRAVETFLAAYAVPA 202 + V RAVE FLAAYA+ A Sbjct: 181 EYLHGAVQRAVELFLAAYALDA 202 >ref|ZP_06486233.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 213 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 92/199 (46%), Positives = 131/199 (65%) Query: 1 MRVKTEAKREAILAVAAEVFKEMGFEGASMAEISARIGGSKGTLYAYFKSKEELFVGVMH 60 MRV+TE KREAI+ A+EVF E+GFEGASM++I+AR+GGSK TLY YF SKEELFV Sbjct: 5 MRVRTEEKREAIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFPSKEELFVAFAK 64 Query: 61 QEAKKEIEPAFDALDNQRGDLETTLRMFGEKAVSFLCQTSSLQTHRMIVAEAGRSDIGRR 120 + + I+P DAL G +E TL+ FGE ++FLC SS+ + I+ +GRSD+G Sbjct: 65 DMSDRYIDPLLDALSQSSGPIEETLQRFGEDILTFLCAPSSITIWQTIIGVSGRSDVGAL 124 Query: 121 FHEEGPKQGLQRMAAFMKKQMDAGKLRQGDPMLATRQLWALLDCETVKPMMLGLETSISR 180 F GP++G+QR+ +++ QM+ G +R D ++A++QL LL ET+ P + G S Sbjct: 125 FFNAGPEEGVQRVTDYLQTQMERGVIRCPDALIASKQLSGLLHAETLMPCLFGALQDPSP 184 Query: 181 PRMKRMVGRAVETFLAAYA 199 +++ RAV+ FLA Y Sbjct: 185 AYLRQATRRAVDMFLAGYG 203 >ref|NP_638032.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] ref|YP_242519.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gb|AAM41956.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAY48499.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gb|AEL07906.1| transcriptional regulator [Xanthomonas campestris pv. raphani 756C] Length = 205 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 89/199 (44%), Positives = 128/199 (64%) Query: 1 MRVKTEAKREAILAVAAEVFKEMGFEGASMAEISARIGGSKGTLYAYFKSKEELFVGVMH 60 MRV+TE KR+ I+ A+EVF E+GFEGASM++I+AR+GGSK TLY YF SKEELFV V Sbjct: 1 MRVRTEEKRDTIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFGSKEELFVAVAK 60 Query: 61 QEAKKEIEPAFDALDNQRGDLETTLRMFGEKAVSFLCQTSSLQTHRMIVAEAGRSDIGRR 120 + + +P DAL G + L+ FGE ++FLC ++ + + I+ +GRSD+G Sbjct: 61 DMSDRYFDPLLDALSRSSGPIADALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSDVGAL 120 Query: 121 FHEEGPKQGLQRMAAFMKKQMDAGKLRQGDPMLATRQLWALLDCETVKPMMLGLETSISR 180 F G ++GL+R A +++ Q+D G+LR D MLA +Q AL++ ET+ P + G + S Sbjct: 121 FFSAGQEEGLKRFAEYLQTQVDCGQLRCDDTMLAAQQFAALVEAETLMPCLFGALKNPSP 180 Query: 181 PRMKRMVGRAVETFLAAYA 199 ++ RAVE FL YA Sbjct: 181 EYLRDATRRAVELFLVGYA 199