BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1131.p (373 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_03263996.1| outer membrane porin, OmpC family [Burkholder... 403 e-110 ref|YP_003774755.1| outer membrane porin, OmpC family protein [H... 233 4e-59 ref|YP_001565451.1| porin [Delftia acidovorans SPH-1] >gi|160365... 218 1e-54 ref|YP_004487744.1| porin [Delftia sp. Cs1-4] >gi|333744212|gb|A... 214 2e-53 ref|YP_004752740.1| outer membrane porin, ompC family [Collimona... 210 3e-52 >ref|ZP_03263996.1| outer membrane porin, OmpC family [Burkholderia sp. H160] gb|EEA04370.1| outer membrane porin, OmpC family [Burkholderia sp. H160] Length = 374 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 227/361 (62%), Positives = 274/361 (75%), Gaps = 1/361 (0%) Query: 13 ALLLAAAPVAFAQSSVTIYGVVDVYTAYQKSTVGGKDTSLWAMGNNGQMTSRLGFKGVED 72 A ++ +AP A AQSSVT+YGV+DV+ YQ + V GK T+L +GNNG+MTSR G +G ED Sbjct: 15 AAIIVSAP-AMAQSSVTLYGVLDVFAGYQNTKVSGKTTTLAVLGNNGEMTSRWGLRGTED 73 Query: 73 LGGGYRASFNLETGFDPSTGGLQNSYRYFDRQSWVGLGGGFGEVRVGRQNSVMFLYSGNM 132 LGGGY +F LE GFDP TG +QNS+R+FDRQ+WVG+ GGFGE+R+GRQNS MF YSGNM Sbjct: 74 LGGGYHVNFALENGFDPGTGKVQNSFRFFDRQAWVGVSGGFGELRLGRQNSPMFAYSGNM 133 Query: 133 DAFGAATYGSAYNNFANWLARVDNDISYISPRFANTTLELHYSVGERAGSTAGNAVYQIG 192 DAF AATY S +NNF+NW ARVDNDI++ISP+FA T +ELHYSVG + G+ AGNAVYQ G Sbjct: 134 DAFSAATYASGFNNFSNWQARVDNDIAWISPKFAGTQVELHYSVGGQPGTLAGNAVYQAG 193 Query: 193 MQTQQGPVYVGSAYLNANNSTNTNSVKQFMLGGNVDYGSGKVYLAFFRTNEVISATTGNV 252 +QT QGPVY AYLNA N+T +N V++FM GGNVDYG G++YL +FR N VISATTGN Sbjct: 194 VQTAQGPVYFALAYLNAANATVSNRVQEFMAGGNVDYGWGRIYLGYFRANAVISATTGNA 253 Query: 253 FTNPAGKYDPAGAVVGNTAGDYHNTYSLSADYRINAQTTVGAGGGYVKDSSRYNNNARQF 312 +NPAGKYDPA VGNT GD+H+TYSLSADYR + +VGAG Y KDS+ N+A Q+ Sbjct: 254 LSNPAGKYDPAVGPVGNTPGDWHSTYSLSADYRFSPFFSVGAGAAYTKDSTHLGNDAFQY 313 Query: 313 SLIVNYDLSKRTRLYAVASRLINQNTAAYRMTGASFTASQALSPDAGASETGVQLGIRHT 372 I NYDLSK TRLY S L N TA ++M GAS T L+P G S+ GVQ GIRH Sbjct: 314 GAIANYDLSKATRLYGTISELKNYGTAQFKMAGASITTGSFLTPGPGQSQFGVQFGIRHL 373 Query: 373 F 373 F Sbjct: 374 F 374 >ref|YP_003774755.1| outer membrane porin, OmpC family protein [Herbaspirillum seropedicae SmR1] gb|ADJ62847.1| outer membrane porin, OmpC family protein [Herbaspirillum seropedicae SmR1] Length = 346 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 152/362 (41%), Positives = 214/362 (59%), Gaps = 25/362 (6%) Query: 12 AALLLAAAPVAFAQSSVTIYGVVDVYTAYQKSTVGGKDTSLWAMGNNGQMTSRLGFKGVE 71 A+LL A A AQS+VT+YGV+D Y Y +T G S+ ++ + G SR+GFKG E Sbjct: 10 ASLLCAGG--ALAQSNVTLYGVIDTYMGYTNATGKG---SVASLDSGGYQASRVGFKGSE 64 Query: 72 DLGGGYRASFNLETGFDPSTGGLQNSYRYFDRQSWVGLGGGFGEVRVGRQNSVMFLYSGN 131 DLGGG RA+F +E GF +G + +S R F+RQSWVGLG GE+R+GRQNS FL Sbjct: 65 DLGGGLRANFQMENGFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNSPGFLMIAR 124 Query: 132 MDAFGAATYGSAYNNFANWLARVDNDISYISPRFANTTLELHYSVGERAGSTAGNAVYQI 191 +DAF ATY S NN + + R DN I Y+SP ++ +Y +GE+ G + + Sbjct: 125 LDAFAGATYASFLNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTAPRNGLSTAML 184 Query: 192 GMQTQQGPVYVGSAYLNANNSTNTNSVKQFMLGGNVDYGSGKVYLAFFRTNEVISATTGN 251 + + GP+Y+G + N++ + +++ GG DYGSGKV+L ++R N + +A + Sbjct: 185 AGEYESGPLYLGVSSSAQNSANDNITIRSTFAGGAYDYGSGKVFLGYYRGNNLGAAAS-- 242 Query: 252 VFTNPAGKYDPAGAVVGNTAGDYHNTYSLSADYRINAQTTVGAGGGYVKDSSRYNNNARQ 311 NT G Y++ YSLSA+YR+ Q T+GAG G+ KDS+ NARQ Sbjct: 243 ----------------ANTPGSYYSAYSLSANYRLTGQATLGAGYGWAKDSTGAGRNARQ 286 Query: 312 FSLIVNYDLSKRTRLYAVASRLINQNTAAYRMTGASFTASQALSPDAGASETGVQLGIRH 371 FSLI YDLS+RT LYA + L N N A++ + GA+ A P +G + GVQ+GIRH Sbjct: 287 FSLIGTYDLSRRTMLYATYAHLANNNGASFSLAGAAPITKNA--PVSGGTVNGVQVGIRH 344 Query: 372 TF 373 F Sbjct: 345 LF 346 >ref|YP_001565451.1| porin [Delftia acidovorans SPH-1] gb|ABX37066.1| porin Gram-negative type [Delftia acidovorans SPH-1] Length = 383 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 158/360 (43%), Positives = 202/360 (56%), Gaps = 17/360 (4%) Query: 22 AFAQSSVTIYGVVDVYTAYQKSTVGGKDTSLWAMGNNGQMTSRLGFKGVEDLGGGYRASF 81 A AQSSVTIYG VD Y + +S+ G T+L + + SRLGF+G EDLGGG A F Sbjct: 33 AHAQSSVTIYGSVDQYINHMRSSSGASMTTL---EDGALLRSRLGFRGHEDLGGGLYAKF 89 Query: 82 NLETGFDPSTGGLQNSYRYFDRQSWVGLGGGFGEVRVGRQNSVMFLYSGNMDAFGAATYG 141 LE G + G +S R FDRQSWVGLGGG+GEVR+GRQN+V+F +D F + T G Sbjct: 90 QLEMGINADNGTQADSTRGFDRQSWVGLGGGWGEVRLGRQNTVIFGRGDYID-FTSRTLG 148 Query: 142 SAYNNFANWLARVDNDISYISPRFANTTLELHYSVGERAGSTAGNAVYQIGMQTQQGPVY 201 S NNF +R DNDISY SPR A E HY++ E G+ A A+YQ+G+ GP Sbjct: 149 SMVNNFG-VPSRFDNDISYTSPRMAGFLFEAHYAMAE-TGAPARQAIYQLGLDYLNGPYR 206 Query: 202 VGSAYLNA---NNSTNTNSVKQFMLGGNVDYGSGKVYLAFFRTNEVISATTGNVFTNPAG 258 VG A L A N+ T++V+ L N DYG GKV LAF R+N + + GN N Sbjct: 207 VGYAGLYARAPQNAAYTDAVRYDNLYANYDYGKGKVQLAFVRSNNSTAGSAGN---NTGT 263 Query: 259 KYDPAGAVVGNTAGD---YHNTYSLSADYRINAQTTVGAGGGYVKDSSRYNNNARQFSLI 315 G +V T D ++ + LSADYR+ Q VGA G ++D S A ++ Sbjct: 264 VLGNVGGLVAGTNADVRRFYRVWQLSADYRVTPQLRVGALWGRIQDGSDSGRGASGGAVA 323 Query: 316 VNYDLSKRTRLYAVASRLINQNTAAYRMTGASFTASQALSPD--AGASETGVQLGIRHTF 373 YDLSKRT LYAVA +L N A +R+ + S D G + GVQLG+ H F Sbjct: 324 AYYDLSKRTMLYAVAEQLKNDRNAGFRLAASGGMKPNFTSADDVNGRTIKGVQLGVLHRF 383 >ref|YP_004487744.1| porin [Delftia sp. Cs1-4] gb|AEF89389.1| porin Gram-negative type [Delftia sp. Cs1-4] Length = 383 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 156/360 (43%), Positives = 201/360 (55%), Gaps = 17/360 (4%) Query: 22 AFAQSSVTIYGVVDVYTAYQKSTVGGKDTSLWAMGNNGQMTSRLGFKGVEDLGGGYRASF 81 A AQSSVTIYG VD Y + +S+ G T+L + + SRLGF+G EDLGGG A F Sbjct: 33 AQAQSSVTIYGSVDQYINHMRSSSGASMTTL---EDGALLRSRLGFRGQEDLGGGLYAKF 89 Query: 82 NLETGFDPSTGGLQNSYRYFDRQSWVGLGGGFGEVRVGRQNSVMFLYSGNMDAFGAATYG 141 LE G + G +S R FDRQSWVGLGGG+GEVR+GRQN+V+F +D F + T G Sbjct: 90 QLEMGINADNGTQADSTRGFDRQSWVGLGGGWGEVRLGRQNTVIFGRGDYID-FTSRTLG 148 Query: 142 SAYNNFANWLARVDNDISYISPRFANTTLELHYSVGERAGSTAGNAVYQIGMQTQQGPVY 201 S NNF +R DNDISY SPR A E HY++ E G+ A A+YQ+G+ P Sbjct: 149 SMVNNFG-VPSRFDNDISYTSPRMAGFLFEAHYAMAE-TGAPARQAIYQLGLDYLNAPYR 206 Query: 202 VGSAYLNA---NNSTNTNSVKQFMLGGNVDYGSGKVYLAFFRTNEVISATTGNVFTNPAG 258 VG A L A ++ T++V+ L N DYG GKV LAF R+N + + GN N Sbjct: 207 VGYAGLYARAPQSAAYTDAVRYDNLYANYDYGKGKVQLAFVRSNNSTAGSAGN---NTGT 263 Query: 259 KYDPAGAVVGNTAGD---YHNTYSLSADYRINAQTTVGAGGGYVKDSSRYNNNARQFSLI 315 G +V T D ++ + LSADYR+ Q VGA G ++D S A ++ Sbjct: 264 VLGNVGGLVAGTNADVRRFYRVWQLSADYRVTPQLRVGALWGRIQDGSDSGRGASGGAVA 323 Query: 316 VNYDLSKRTRLYAVASRLINQNTAAYRMTGASFTASQALSPD--AGASETGVQLGIRHTF 373 YDLSKRT LYAVA +L N A +R+ + S D G + GVQLG+ H F Sbjct: 324 AYYDLSKRTMLYAVAEQLKNDRNAGFRLAASGGMKPNFTSADDVNGRTIKGVQLGVLHRF 383 >ref|YP_004752740.1| outer membrane porin, ompC family [Collimonas fungivorans Ter331] gb|AEK61917.1| outer membrane porin, OmpC family [Collimonas fungivorans Ter331] Length = 405 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 147/374 (39%), Positives = 208/374 (55%), Gaps = 12/374 (3%) Query: 8 RLIPAALLLAAAPVAFAQSSVTIYGVVDVYTAYQKSTVGGKDTSLWAMGNNGQMTSRLGF 67 + + A L + +A A+ ++T+YG +D Y Y S+ G S+ + + + SRLG Sbjct: 36 KFVAACSLAGCSVLAQAEPNLTLYGDLDQYLGYIHSSSG---KSVTGLNDGAILRSRLGL 92 Query: 68 KGVEDLGGGYRASFNLETGFDPSTGGLQNSYRYFDRQSWVGLGGGFGEVRVGRQNSVMFL 127 +GVE+LGGGY+ F LE G + +TGG +S R FDRQ+WVG+ GE RVGRQNS++F Sbjct: 93 RGVEELGGGYQTRFTLEQGLNANTGGAADSSRLFDRQAWVGMNTPAGEFRVGRQNSIVFF 152 Query: 128 YSGNMDAFGAATYGSAYNNFANWLARVDNDISYISPRFANTTLELHYSVGERAGSTAG-N 186 G +D TYGS N F +R DNDISY SPR A + HY++ E AG + G Sbjct: 153 IGGAIDYTERTTYGSVINTFG-VPSRYDNDISYKSPRVAGFQFDAHYALTETAGESVGAR 211 Query: 187 AVYQIGMQTQQGPVYVGSAYLNANNSTNTNSVKQFM---LGGNVDYGSGKVYLAFFRTNE 243 VYQ+G+ +GP G A L A + N ++ + L N DYG GK+Y A+ R+N Sbjct: 212 GVYQLGLDYSKGPYRAGYAGLWAKPAANAQFSEKVVYHNLYANYDYGKGKLYFAYVRSNN 271 Query: 244 VISATTGNVFTNPAGKYD-PAGAVVGNTAG--DYHNTYSLSADYRINAQTTVGAGGGYVK 300 V S +GN P A G A +N + +SADYR++ Q +GA G ++ Sbjct: 272 VTSNASGNTAAAILNNVSIPGNAFTGANADVQRMYNIFQVSADYRLSPQWRIGALYGVMQ 331 Query: 301 DSSRYNNNARQFSLIVNYDLSKRTRLYAVASRLINQNTAAYRMTG-ASFTASQALSPDAG 359 D+S+ ++ A+ +L YDLSKRT LY AS + N A +R +G A TA+ A + G Sbjct: 332 DTSQRDSGAQGGNLGTYYDLSKRTTLYGFASYMKNDANAGFRFSGSAGPTANLAGADING 391 Query: 360 ASETGVQLGIRHTF 373 S G+Q GI H F Sbjct: 392 KSLAGLQAGILHRF 405