BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1129.p (362 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00056299.2| COG2828: Uncharacterized protein conserved in... 469 e-130 ref|YP_934048.1| hypothetical protein azo2544 [Azoarcus sp. BH72... 458 e-127 ref|YP_419613.1| hypothetical protein amb0250 [Magnetospirillum ... 453 e-125 ref|YP_484500.1| hypothetical protein RPB_0878 [Rhodopseudomonas... 449 e-124 ref|YP_585847.1| hypothetical protein Rmet_3706 [Cupriavidus met... 446 e-123 >ref|ZP_00056299.2| COG2828: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 363 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 241/357 (67%), Positives = 285/357 (79%), Gaps = 9/357 (2%) Query: 1 MRGGTSRGPFFVADDLPEDIAARDRVLLAALGSPDRRQIDGLGGAHPLTSKAGIVSRSRV 60 MRGGTSRGPFFV DLP D+A RD+VLLA +GSP RQIDGLGG HPLTSK GIV S Sbjct: 10 MRGGTSRGPFFVESDLPSDVALRDKVLLAVMGSPHARQIDGLGGGHPLTSKVGIVRPSTT 69 Query: 61 TGVDLDFLFAQLQPESDRVDTTPNCGNMLAAVLPFAIERGLIVAGPETTTARILTLNTGM 120 G+DLDFLFAQLQP SD VDTTPNCGNMLAAV+PFA+ERG++ ETTT R+LTLNT M Sbjct: 70 DGIDLDFLFAQLQPNSDTVDTTPNCGNMLAAVVPFALERGIVKPQGETTTLRVLTLNTHM 129 Query: 121 QCDVTVQTPGGRLRYRGDTRIDGVPGSAAPVSINFLDTAGSVCPAMLPTGRVQDSVRYVT 180 CD+TVQTPGGR+ Y G+ RIDGVPGS+AP++INFLDTAGSVC +LPTGRV+D + + Sbjct: 130 ACDITVQTPGGRVNYEGEARIDGVPGSSAPIAINFLDTAGSVCSGLLPTGRVKDVIDGL- 188 Query: 181 PSGEQRETAATLIDNGMPMVLVRASDFGLNGDESVAVLNADAVLKERLEALRLACGPLMG 240 T IDNGMPMVL RA+D G NG ESV +NADA LK R+E LR+ G LMG Sbjct: 189 --------EITCIDNGMPMVLFRAADMGRNGSESVEAMNADAELKARIETLRIKAGHLMG 240 Query: 241 LGEVSARNYPKMCLLSAPVAGGTISTRCFIPHVCHEAIGVLAAVTVATACVLEGSVAQGL 300 LG+V+ +NYPKMCL++ P GG + TRCFIPHVCH+AIGVLAAVTVATACVL+GSV +GL Sbjct: 241 LGDVTPKNYPKMCLVAPPSTGGAVGTRCFIPHVCHDAIGVLAAVTVATACVLKGSVTEGL 300 Query: 301 ALPGSGLQRTVSVEHPSGEFSVELELDPHDQQQILRAALLRTARPILRGEVLIPAEL 357 A G +TV+VEHP+GEFSVELELDP D ++++RAALLRTAR +++GEV+IPA + Sbjct: 301 ASVPDGRIKTVAVEHPTGEFSVELELDPQDPEKVIRAALLRTARLLMKGEVMIPAAI 357 >ref|YP_934048.1| hypothetical protein azo2544 [Azoarcus sp. BH72] emb|CAL95161.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 360 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 241/360 (66%), Positives = 286/360 (79%), Gaps = 9/360 (2%) Query: 1 MRGGTSRGPFFVADDLPEDIAARDRVLLAALGSPDRRQIDGLGGAHPLTSKAGIVSRSRV 60 MRGGTSRGPFF DLP D+ RDRVLLA +GSPDRRQIDGLGGAHPLTSK GIV Sbjct: 10 MRGGTSRGPFFKESDLPADVPTRDRVLLAVMGSPDRRQIDGLGGAHPLTSKVGIVRPGSQ 69 Query: 61 TGVDLDFLFAQLQPESDRVDTTPNCGNMLAAVLPFAIERGLIVAGPETTTARILTLNTGM 120 GVDLDFLFAQLQP+ D VDTTPNCGNMLAAV+PFA+E G++ A ET+T R+LTLNT M Sbjct: 70 PGVDLDFLFAQLQPDKDTVDTTPNCGNMLAAVVPFALETGMVKAQGETSTFRVLTLNTDM 129 Query: 121 QCDVTVQTPGGRLRYRGDTRIDGVPGSAAPVSINFLDTAGSVCPAMLPTGRVQDSVRYVT 180 QCD+TV TPGG + Y GD RIDGVPGS+APV+INFLDTAGSVC +LPTG+V+D + V Sbjct: 130 QCDITVHTPGGVVSYEGDARIDGVPGSSAPVTINFLDTAGSVCSGLLPTGKVRDVIDGV- 188 Query: 181 PSGEQRETAATLIDNGMPMVLVRASDFGLNGDESVAVLNADAVLKERLEALRLACGPLMG 240 T IDNGMP+V+ +A+D G +G ESVA LNAD LK R+E LR+ACG MG Sbjct: 189 --------EVTCIDNGMPLVIFKAADVGRSGYESVAELNADTELKARIERLRIACGHAMG 240 Query: 241 LGEVSARNYPKMCLLSAPVAGGTISTRCFIPHVCHEAIGVLAAVTVATACVLEGSVAQGL 300 LG+V+A+NYPKM L++ P GG+++TR FIPHVCH+AIGVLAAVTVATACVL+G+V +G+ Sbjct: 241 LGDVTAKNYPKMTLVAPPQHGGSLATRSFIPHVCHDAIGVLAAVTVATACVLKGAVTEGI 300 Query: 301 ALPGSGLQRTVSVEHPSGEFSVELELDPHDQQQILRAALLRTARPILRGEVLIPAELLTD 360 A +G +TVSVEHP+GEFSVELELDP D Q + RAALLRTAR I+RGEV++PA + D Sbjct: 301 AQVPAGNVKTVSVEHPTGEFSVELELDPADPQNVTRAALLRTARLIMRGEVMVPAAVWPD 360 >ref|YP_419613.1| hypothetical protein amb0250 [Magnetospirillum magneticum AMB-1] dbj|BAE49054.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1] Length = 363 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 237/357 (66%), Positives = 283/357 (79%), Gaps = 9/357 (2%) Query: 1 MRGGTSRGPFFVADDLPEDIAARDRVLLAALGSPDRRQIDGLGGAHPLTSKAGIVSRSRV 60 MRGGTSRGPFF+ DLP D+A RD+VLLA +GSP RQIDGLGG HPLTSK GIV S Sbjct: 10 MRGGTSRGPFFLESDLPADMALRDKVLLAVMGSPHARQIDGLGGGHPLTSKVGIVRPSTT 69 Query: 61 TGVDLDFLFAQLQPESDRVDTTPNCGNMLAAVLPFAIERGLIVAGPETTTARILTLNTGM 120 GVDLDFLFAQLQP+ + VDTTPNCGNMLAAV+PFA+ERG++ +TTT R+LTLNT M Sbjct: 70 PGVDLDFLFAQLQPDRETVDTTPNCGNMLAAVVPFALERGIVRPQGDTTTLRVLTLNTDM 129 Query: 121 QCDVTVQTPGGRLRYRGDTRIDGVPGSAAPVSINFLDTAGSVCPAMLPTGRVQDSVRYVT 180 QCD+TV+TPGGR+ Y+G+ RIDGVPG+A+P++INFLDTAGSVC +LPTGR +D + + Sbjct: 130 QCDITVRTPGGRMEYQGEARIDGVPGTASPIAINFLDTAGSVCTGLLPTGRTRDVIDGL- 188 Query: 181 PSGEQRETAATLIDNGMPMVLVRASDFGLNGDESVAVLNADAVLKERLEALRLACGPLMG 240 T IDNGMPMVL RA+D G G ESV LNAD LK R+E LRL G LMG Sbjct: 189 --------EVTCIDNGMPMVLFRAADLGRTGAESVETLNADTELKARIETLRLKAGHLMG 240 Query: 241 LGEVSARNYPKMCLLSAPVAGGTISTRCFIPHVCHEAIGVLAAVTVATACVLEGSVAQGL 300 LG+V +NYPKMCL++ P AGG + TRCFIPHVCH+AIGVLAAVTVATACVLEGSV +GL Sbjct: 241 LGDVGPKNYPKMCLVAPPSAGGALGTRCFIPHVCHDAIGVLAAVTVATACVLEGSVTEGL 300 Query: 301 ALPGSGLQRTVSVEHPSGEFSVELELDPHDQQQILRAALLRTARPILRGEVLIPAEL 357 A G +T++VEHP+GEFSVELELD D Q+++RAALLRTAR +++GEV+IPA + Sbjct: 301 ANVPGGAVKTIAVEHPTGEFSVELELDLADPQKVVRAALLRTARLLMKGEVMIPAAI 357 >ref|YP_484500.1| hypothetical protein RPB_0878 [Rhodopseudomonas palustris HaA2] gb|ABD05589.1| methylitaconate delta2-delta3-isomerase [Rhodopseudomonas palustris HaA2] Length = 372 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 238/357 (66%), Positives = 280/357 (78%), Gaps = 9/357 (2%) Query: 1 MRGGTSRGPFFVADDLPEDIAARDRVLLAALGSPDRRQIDGLGGAHPLTSKAGIVSRSRV 60 MRGGTSRGPFF A DLP DIA RDRVLLA +GSPDRRQIDGLGGAHPLTSK GIV++ Sbjct: 10 MRGGTSRGPFFNAADLPSDIATRDRVLLAVMGSPDRRQIDGLGGAHPLTSKVGIVAKGSK 69 Query: 61 TGVDLDFLFAQLQPESDRVDTTPNCGNMLAAVLPFAIERGLIVAGPETTTARILTLNTGM 120 GVDLDFLFAQLQP+ D VDTTPNCGNMLAAV+PFA+E GL+ +TTT R+LTLNT M Sbjct: 70 PGVDLDFLFAQLQPDKDSVDTTPNCGNMLAAVVPFALETGLVQPQGDTTTLRVLTLNTDM 129 Query: 121 QCDVTVQTPGGRLRYRGDTRIDGVPGSAAPVSINFLDTAGSVCPAMLPTGRVQDSVRYVT 180 QCD+TVQTP G + Y GD RIDG PG++AP+ INFLDTAGSV P++LPTG V+D + V Sbjct: 130 QCDITVQTPDGHVSYDGDARIDGAPGTSAPIKINFLDTAGSVAPSLLPTGNVRDVIDGV- 188 Query: 181 PSGEQRETAATLIDNGMPMVLVRASDFGLNGDESVAVLNADAVLKERLEALRLACGPLMG 240 T IDNGMP+V+ RA G G E VA LNAD LK RLE LR+ACG M Sbjct: 189 --------EVTCIDNGMPLVMFRAEAVGRTGYEGVAQLNADTDLKARLERLRIACGHAMQ 240 Query: 241 LGEVSARNYPKMCLLSAPVAGGTISTRCFIPHVCHEAIGVLAAVTVATACVLEGSVAQGL 300 LG+V+A+NYPKM L++AP AGG+I+TR FIPHVCH+AIGVLAAVTVATACVL+GSV QG+ Sbjct: 241 LGDVTAKNYPKMTLITAPRAGGSITTRSFIPHVCHDAIGVLAAVTVATACVLDGSVTQGI 300 Query: 301 ALPGSGLQRTVSVEHPSGEFSVELELDPHDQQQILRAALLRTARPILRGEVLIPAEL 357 A G + +SVEHP+GEFSVE+E+DP + Q + RAALLRTAR I+RGE ++PA + Sbjct: 301 AQVPDGTIKQISVEHPTGEFSVEIEVDPANPQTVTRAALLRTARLIMRGEAMVPASV 357 >ref|YP_585847.1| hypothetical protein Rmet_3706 [Cupriavidus metallidurans CH34] gb|ABF10578.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 382 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 243/355 (68%), Positives = 279/355 (78%), Gaps = 1/355 (0%) Query: 1 MRGGTSRGPFFVADDLPEDIAARDRVLLAALGSPDRRQIDGLGGAHPLTSKAGIVSRSRV 60 MRGGTSRGPFF+A DLPED+ ARDRVLLAA+GSPD RQIDGLGGAHPLTSKA IVSR Sbjct: 17 MRGGTSRGPFFLASDLPEDVPARDRVLLAAMGSPDPRQIDGLGGAHPLTSKACIVSRGTP 76 Query: 61 TGVDLDFLFAQLQPESDRVDTTPNCGNMLAAVLPFAIERGLIVAGPETTTARILTLNTGM 120 DLDF FAQLQP +D VDTTPNCGNMLAAVLPFAIERGLI + T AR+LT NTGM Sbjct: 77 GHADLDFTFAQLQPNADTVDTTPNCGNMLAAVLPFAIERGLIAPQGDITRARVLTRNTGM 136 Query: 121 QCDVTVQTPGGRLRYRGDTRIDGVPGSAAPVSINFLDTAGSVCPAMLPTGRVQDSVRYVT 180 CD+T+QTPGG R+ G+ RIDGVPG+AAP+ I+FLDTAGSVC AMLPTG D + Sbjct: 137 LCDITIQTPGGVPRFSGNARIDGVPGAAAPIVIDFLDTAGSVCHAMLPTGNAIDVLTIND 196 Query: 181 P-SGEQRETAATLIDNGMPMVLVRASDFGLNGDESVAVLNADAVLKERLEALRLACGPLM 239 P G R AATLIDNGMPMVL+RA D G ESVA LNAD LK+R+EA RL G LM Sbjct: 197 PVRGGSRLIAATLIDNGMPMVLMRAEDLDRTGYESVAALNADHELKQRIEAARLVAGELM 256 Query: 240 GLGEVSARNYPKMCLLSAPVAGGTISTRCFIPHVCHEAIGVLAAVTVATACVLEGSVAQG 299 GLG+VS ++YPKMCLL+ P GG+I+TRCFIP VCH+AIGVLAA+TV TACVL G+VA Sbjct: 257 GLGDVSDKSYPKMCLLARPRQGGSIATRCFIPRVCHDAIGVLAAITVGTACVLPGTVASD 316 Query: 300 LALPGSGLQRTVSVEHPSGEFSVELELDPHDQQQILRAALLRTARPILRGEVLIP 354 +A+ G +SVEHP+GEF+VELE DP I+R+AL+RTARPI+RGEVL+P Sbjct: 317 IAVTSVGPLHAISVEHPTGEFTVELETDPAKPGSIVRSALIRTARPIMRGEVLVP 371