BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1128.p (401 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00944628.1| Transcriptional regulators, LysR family [Rals... 407 e-111 ref|YP_002257027.1| transcription factor transcription regulator... 405 e-111 emb|CCA86985.1| transcriptional regulator, LysR family [Ralstoni... 399 e-109 ref|YP_003750359.1| transcriptional regulator, lysr family [Rals... 398 e-108 emb|CAQ37216.1| probable transcription factor protein [Ralstonia... 392 e-107 >ref|ZP_00944628.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gb|EAP72912.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] Length = 399 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 250/399 (62%), Positives = 290/399 (72%), Gaps = 2/399 (0%) Query: 1 MALLNLRHLHVFNVVATTGGVRRSSDTLLRASSAVARSVAALEQSLSTQLFERKGRGMLL 60 M ++L HLHVF VA GGVRRSS+TL RASSA+ARSVAALE +L LFERKGRGMLL Sbjct: 1 MRTISLHHLHVFAGVAAAGGVRRSSETLHRASSAIARSVAALEAALGVALFERKGRGMLL 60 Query: 61 TAAGEAVRLRVERIEAELREVRDDALRLRDRNGQPVGSLDALFNERRLQAAALLAETHHM 120 T AGE V LR ++IEA LREVR+DA+R R G PV L+AL NERRL+ AALLAE HHM Sbjct: 61 TRAGEIVLLRAQQIEAALREVREDAVR--SRQGGPVAGLEALHNERRLEVAALLAEVHHM 118 Query: 121 PSVARLMEVSPSAVSQALSMLEGILGQALFFRTAHGMLPTDAGRRWTERFGRALAELRHI 180 PSVA + +S SAVSQA++ LE L Q LF RTA GM+PTDAG RW RF R L+ELRHI Sbjct: 119 PSVAAALGISQSAVSQAVARLEDALAQPLFVRTARGMVPTDAGSRWIVRFERVLSELRHI 178 Query: 181 PEDIAALDGVVQGTVTVGALPLARSQLLPAAMTRVLARHPRLQIRSLESPYEELAAGLMS 240 DIAAL GV++GTVT+GALPL R+QLLPAA+ V ARHPRL RSLESPYEEL AGL+S Sbjct: 179 HADIAALQGVLEGTVTIGALPLGRTQLLPAAIAEVHARHPRLHFRSLESPYEELTAGLLS 238 Query: 241 GRIDFIVGALRAFSSDTFDMRPLVADSAALIARAGHPLARRKKLSLRDLDGYPWVLSRAG 300 GRID I+GALR S L D A+I RA HPLA +K+L LRDLDGYPWVLSRAG Sbjct: 239 GRIDCIIGALRPLHSQGLTTEVLFEDRIAIIVRASHPLAAKKRLGLRDLDGYPWVLSRAG 298 Query: 301 TPLRDSIEQFFRDSHWHAPRPAVETGDLALLRGLLVGSDMLTVISAHQLQHEIATGQLTT 360 +PLR++++ F P+P VETGDLAL+RGLL+ DM+T +SAHQL +EI G L Sbjct: 299 SPLREALDAVFARQGLPQPQPLVETGDLALVRGLLLRGDMVTALSAHQLHYEIEAGWLRA 358 Query: 361 LPFAMRGMERRIGLMQRKGAHLSPGARALQEAIEAVAAA 399 L M M R IG+ R GA LSPGA AL I +A A Sbjct: 359 LDLPMPDMARGIGITTRMGARLSPGADALLAEIRRLALA 397 >ref|YP_002257027.1| transcription factor transcription regulator protein [Ralstonia solanacearum IPO1609] emb|CAQ58908.1| transcription factor transcription regulator protein [Ralstonia solanacearum IPO1609] Length = 394 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 248/394 (62%), Positives = 287/394 (72%), Gaps = 2/394 (0%) Query: 6 LRHLHVFNVVATTGGVRRSSDTLLRASSAVARSVAALEQSLSTQLFERKGRGMLLTAAGE 65 + HLHVF VA GGVRRSS+TL RASSA+ARSVAALE +L LFERKGRGMLLT AGE Sbjct: 1 MHHLHVFAGVAAAGGVRRSSETLHRASSAIARSVAALEAALGVALFERKGRGMLLTRAGE 60 Query: 66 AVRLRVERIEAELREVRDDALRLRDRNGQPVGSLDALFNERRLQAAALLAETHHMPSVAR 125 V LR ++IEA LREVR+DA+R R G PV L+AL NERRL+ AALLAE HHMPSVA Sbjct: 61 IVLLRAQQIEAALREVREDAVR--SRQGGPVAGLEALHNERRLEVAALLAEVHHMPSVAA 118 Query: 126 LMEVSPSAVSQALSMLEGILGQALFFRTAHGMLPTDAGRRWTERFGRALAELRHIPEDIA 185 + +S SAVSQA++ LE L Q LF RTA GM+PTDAG RW RF R L+ELRHI DIA Sbjct: 119 ALGISQSAVSQAVARLEDALAQPLFVRTARGMVPTDAGSRWIVRFERVLSELRHIHADIA 178 Query: 186 ALDGVVQGTVTVGALPLARSQLLPAAMTRVLARHPRLQIRSLESPYEELAAGLMSGRIDF 245 AL GV++GTVT+GALPL R+QLLPAA+ V ARHPRL RSLESPYEEL AGL+SGRID Sbjct: 179 ALQGVLEGTVTIGALPLGRTQLLPAAIAEVHARHPRLHFRSLESPYEELTAGLLSGRIDC 238 Query: 246 IVGALRAFSSDTFDMRPLVADSAALIARAGHPLARRKKLSLRDLDGYPWVLSRAGTPLRD 305 I+GALR S L D A+I RA HPLA +K+L LRDLDGYPWVLSRAG+PLR+ Sbjct: 239 IIGALRPLHSQGLTTEVLFEDRIAIIVRASHPLAAKKRLGLRDLDGYPWVLSRAGSPLRE 298 Query: 306 SIEQFFRDSHWHAPRPAVETGDLALLRGLLVGSDMLTVISAHQLQHEIATGQLTTLPFAM 365 +++ F P+P VETGDLAL+RGLL+ DM+T +SAHQL +EI G L L M Sbjct: 299 ALDAVFARQGLPQPQPLVETGDLALVRGLLLRGDMVTALSAHQLHYEIEAGWLRALDLPM 358 Query: 366 RGMERRIGLMQRKGAHLSPGARALQEAIEAVAAA 399 M R IG+ R GA LSPGA AL I +A A Sbjct: 359 PDMARGIGITTRMGARLSPGADALLAEIRRLALA 392 >emb|CCA86985.1| transcriptional regulator, LysR family [Ralstonia syzygii R24] Length = 399 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 244/399 (61%), Positives = 287/399 (71%), Gaps = 2/399 (0%) Query: 1 MALLNLRHLHVFNVVATTGGVRRSSDTLLRASSAVARSVAALEQSLSTQLFERKGRGMLL 60 M ++L HLHVF V+ GGVRR+S+TL RASSA+ARSVAALE +L LFERKGRGMLL Sbjct: 1 MQTISLHHLHVFAGVSAAGGVRRASETLHRASSAIARSVAALEAALGVALFERKGRGMLL 60 Query: 61 TAAGEAVRLRVERIEAELREVRDDALRLRDRNGQPVGSLDALFNERRLQAAALLAETHHM 120 T AGE V LR ++IEA LREVR+DA+R R +PV L+AL NERRL+ AALL E HHM Sbjct: 61 TRAGEIVLLRAQQIEAALREVREDAVR--TRQSRPVAGLEALHNERRLEVAALLCEVHHM 118 Query: 121 PSVARLMEVSPSAVSQALSMLEGILGQALFFRTAHGMLPTDAGRRWTERFGRALAELRHI 180 PSVA + +S SAVSQA++ LE L Q LF RTA GM+PTDAG RW RF R L+ELRHI Sbjct: 119 PSVAAALGISQSAVSQAIARLEDTLAQPLFARTARGMVPTDAGSRWIVRFERVLSELRHI 178 Query: 181 PEDIAALDGVVQGTVTVGALPLARSQLLPAAMTRVLARHPRLQIRSLESPYEELAAGLMS 240 DIAAL GV++GTVT+GALPL R+QLLPAA+ V RHPRL RSLESPYEEL AGL+S Sbjct: 179 HADIAALQGVLEGTVTIGALPLGRTQLLPAAIAEVHGRHPRLHFRSLESPYEELTAGLLS 238 Query: 241 GRIDFIVGALRAFSSDTFDMRPLVADSAALIARAGHPLARRKKLSLRDLDGYPWVLSRAG 300 GRID I+GALR S L D ++I RA HPLA RK+L LRDL GYPWVLSRAG Sbjct: 239 GRIDCILGALRPQHSQGLTTEVLFEDRISIIVRASHPLAARKRLGLRDLAGYPWVLSRAG 298 Query: 301 TPLRDSIEQFFRDSHWHAPRPAVETGDLALLRGLLVGSDMLTVISAHQLQHEIATGQLTT 360 +PLR++++ F P+P VETGDLAL+RGLL+ DM+T +SAHQL +EI G L Sbjct: 299 SPLREALDAVFTRQGLPQPQPLVETGDLALVRGLLLRGDMITALSAHQLHYEIEAGWLRA 358 Query: 361 LPFAMRGMERRIGLMQRKGAHLSPGARALQEAIEAVAAA 399 L M M R IG+ R GA LSPGA AL I +A A Sbjct: 359 LDLPMPDMARGIGITTRMGARLSPGADALLAEIRRLAQA 397 >ref|YP_003750359.1| transcriptional regulator, lysr family [Ralstonia solanacearum PSI07] emb|CBJ35739.1| Transcriptional regulator, LysR family [Ralstonia solanacearum PSI07] emb|CCA82160.1| transcriptional regulator, LysR family [blood disease bacterium R229] Length = 399 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 243/399 (60%), Positives = 288/399 (72%), Gaps = 2/399 (0%) Query: 1 MALLNLRHLHVFNVVATTGGVRRSSDTLLRASSAVARSVAALEQSLSTQLFERKGRGMLL 60 M ++L HLHVF V+ GGVRR+S+TL RASSA+ARSVAALE +L LFERKGRGMLL Sbjct: 1 MQTISLHHLHVFAGVSAAGGVRRASETLHRASSAIARSVAALEAALGVALFERKGRGMLL 60 Query: 61 TAAGEAVRLRVERIEAELREVRDDALRLRDRNGQPVGSLDALFNERRLQAAALLAETHHM 120 T AGE V LR ++IEA LREVR+DA+R R +PV L+AL NERRL+ AALL E HHM Sbjct: 61 TRAGEIVLLRAQQIEAALREVREDAVR--TRQSRPVAGLEALHNERRLEVAALLCEVHHM 118 Query: 121 PSVARLMEVSPSAVSQALSMLEGILGQALFFRTAHGMLPTDAGRRWTERFGRALAELRHI 180 PSVA + +S SAVSQA++ LE L Q LF RTA GM+PTDAG RW RF R L+ELRHI Sbjct: 119 PSVAAALGISQSAVSQAIARLEDTLAQPLFARTARGMVPTDAGSRWIVRFERVLSELRHI 178 Query: 181 PEDIAALDGVVQGTVTVGALPLARSQLLPAAMTRVLARHPRLQIRSLESPYEELAAGLMS 240 DIAAL GV++GTVT+GALPL R+QLLPAA+ + RHPRL+ RSLESPYEEL AGL+S Sbjct: 179 HADIAALQGVLEGTVTIGALPLGRTQLLPAAIAEIHGRHPRLRFRSLESPYEELTAGLLS 238 Query: 241 GRIDFIVGALRAFSSDTFDMRPLVADSAALIARAGHPLARRKKLSLRDLDGYPWVLSRAG 300 GRID I+GALR S L D ++I RA HPLA RK+L LRDL GYPWVLSRAG Sbjct: 239 GRIDCILGALRPQHSQGLTTEVLFEDRISIIVRASHPLAARKRLGLRDLAGYPWVLSRAG 298 Query: 301 TPLRDSIEQFFRDSHWHAPRPAVETGDLALLRGLLVGSDMLTVISAHQLQHEIATGQLTT 360 +PLR++++ F P+P VETGDLAL+RGLL+ DM+T +SAHQL +EI G L Sbjct: 299 SPLREALDAVFTRQGLPLPQPLVETGDLALVRGLLLRGDMITALSAHQLHYEIEAGWLRA 358 Query: 361 LPFAMRGMERRIGLMQRKGAHLSPGARALQEAIEAVAAA 399 L M M R IG+ R GA LSPGA AL I +A A Sbjct: 359 LDLPMPDMARGIGITTRMGARLSPGADALLAEIRRLAQA 397 >emb|CAQ37216.1| probable transcription factor protein [Ralstonia solanacearum MolK2] Length = 399 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 247/399 (61%), Positives = 289/399 (72%), Gaps = 2/399 (0%) Query: 1 MALLNLRHLHVFNVVATTGGVRRSSDTLLRASSAVARSVAALEQSLSTQLFERKGRGMLL 60 M ++L HLHVF VA GGVRRSS+TL RASSA+ARSVAALE +L LFERKGRGMLL Sbjct: 1 MRTISLHHLHVFAGVAAAGGVRRSSETLHRASSAIARSVAALEAALGVALFERKGRGMLL 60 Query: 61 TAAGEAVRLRVERIEAELREVRDDALRLRDRNGQPVGSLDALFNERRLQAAALLAETHHM 120 T AGE V LR ++IEA LREVR+DA+R R G PV L+AL NERRL+ AALLAE HHM Sbjct: 61 TRAGEIVLLRAQQIEAALREVREDAVR--SRQGGPVAGLEALHNERRLEVAALLAEVHHM 118 Query: 121 PSVARLMEVSPSAVSQALSMLEGILGQALFFRTAHGMLPTDAGRRWTERFGRALAELRHI 180 PSVA + +S SAVSQA++ LE L Q LF RTA GM+PTDAG RW RF R L+ELRHI Sbjct: 119 PSVAAALGISQSAVSQAVARLEDALAQPLFVRTARGMVPTDAGSRWIVRFERVLSELRHI 178 Query: 181 PEDIAALDGVVQGTVTVGALPLARSQLLPAAMTRVLARHPRLQIRSLESPYEELAAGLMS 240 DIAAL GV++GTVT+GALPL R+QLLPAA+ V ARHPRL RSLESPYEEL AGL+S Sbjct: 179 HADIAALQGVLEGTVTIGALPLGRTQLLPAAIAEVHARHPRLHFRSLESPYEELTAGLLS 238 Query: 241 GRIDFIVGALRAFSSDTFDMRPLVADSAALIARAGHPLARRKKLSLRDLDGYPWVLSRAG 300 GRID I+GALR S L D ++I RA HPLA +K+L LRDL+GYPWVLSRAG Sbjct: 239 GRIDCIIGALRPLHSQGLTTEVLFEDRISIIVRASHPLAAKKRLGLRDLEGYPWVLSRAG 298 Query: 301 TPLRDSIEQFFRDSHWHAPRPAVETGDLALLRGLLVGSDMLTVISAHQLQHEIATGQLTT 360 +PLR++++ F P+P VETGDL L+RGLL+ DM+T +SAHQL +EI G L Sbjct: 299 SPLREALDAVFARQGLPLPQPLVETGDLLLVRGLLLRGDMVTALSAHQLHYEIEAGWLRA 358 Query: 361 LPFAMRGMERRIGLMQRKGAHLSPGARALQEAIEAVAAA 399 L M M R IG+ R GA LSPGA AL I +A A Sbjct: 359 LDLPMPDMARGIGITTRMGARLSPGADALLAEIRRLALA 397