BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1120.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774778.1| ribulose-5-phosphate 4-epimerase [Herbaspiri... 507 e-142 ref|YP_933499.1| hypothetical protein azo1995 [Azoarcus sp. BH72... 379 e-103 ref|YP_004381989.1| hypothetical protein MDS_4206 [Pseudomonas m... 379 e-103 ref|YP_004314675.1| class II aldolase/adducin family protein [Ma... 353 1e-95 ref|YP_001340676.1| class II aldolase/adducin family protein [Ma... 353 2e-95 >ref|YP_003774778.1| ribulose-5-phosphate 4-epimerase [Herbaspirillum seropedicae SmR1] gb|ADJ62870.1| ribulose-5-phosphate 4-epimerase protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 240/257 (93%), Positives = 248/257 (96%) Query: 1 MNIMQFSYGADKPSHCSDEEWALRIQLAHCYRLVDYLGWTEMIFNHISVRVPGPEHHYLV 60 M+IMQ+SYGA +P+HCSDEEWALRIQLAHCYRLVDYLGWTEMIFNHISVRVPGPEHHYLV Sbjct: 1 MDIMQYSYGAVQPAHCSDEEWALRIQLAHCYRLVDYLGWTEMIFNHISVRVPGPEHHYLV 60 Query: 61 NPFALNYNEVTPANLLKVGLDGQLAEPSDYKANPAGFALHSAIHGARDDLRCVIHTHTTP 120 NPFALNYNEVTPANLLKVGLDG LAEPSDY+ANPAGFALHSAIHGARDDLRCVIHTHTTP Sbjct: 61 NPFALNYNEVTPANLLKVGLDGHLAEPSDYQANPAGFALHSAIHGARDDLRCVIHTHTTP 120 Query: 121 ISAVTMKKSGFEHNDFYGAQLFGRIGYHAFEGITLFAEEKERMLQSLGDKHILVLRNHGV 180 ISAVTMKKSGF HNDFYGAQLFGRIGYH FEGITLFAEEKERMLQSLG+KHILVLRNHGV Sbjct: 121 ISAVTMKKSGFAHNDFYGAQLFGRIGYHDFEGITLFAEEKERMLQSLGEKHILVLRNHGV 180 Query: 181 AVCESDIQRAFFLLWTVQRAAEIQVAGRSMAGEDQLLPDAVRQKCADLTQQLIRNDGFAV 240 AVCESDI+RAFFLLWTVQRAAEIQVAGRSM GEDQ+L D VRQKCADLTQQLIRNDGFAV Sbjct: 181 AVCESDIERAFFLLWTVQRAAEIQVAGRSMGGEDQVLQDDVRQKCADLTQQLIRNDGFAV 240 Query: 241 IFFEAIVRKMLKGGYQV 257 IFF AIVRKMLKG YQV Sbjct: 241 IFFAAIVRKMLKGLYQV 257 >ref|YP_933499.1| hypothetical protein azo1995 [Azoarcus sp. BH72] emb|CAL94612.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 257 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 177/239 (74%), Positives = 197/239 (82%) Query: 12 KPSHCSDEEWALRIQLAHCYRLVDYLGWTEMIFNHISVRVPGPEHHYLVNPFALNYNEVT 71 KP++CSDEEWALRIQLA CY LVDY GWTE IFNHIS R+PG +++YLVNPF LNY EVT Sbjct: 11 KPANCSDEEWALRIQLAECYHLVDYFGWTETIFNHISARLPGGDNYYLVNPFGLNYTEVT 70 Query: 72 PANLLKVGLDGQLAEPSDYKANPAGFALHSAIHGARDDLRCVIHTHTTPISAVTMKKSGF 131 PANLLKV L G EPS Y ANPAGFALHSAIHGAR+D+ CVIHTHT +SAV KK+GF Sbjct: 71 PANLLKVDLQGNKVEPSPYDANPAGFALHSAIHGAREDIHCVIHTHTNAVSAVANKKAGF 130 Query: 132 EHNDFYGAQLFGRIGYHAFEGITLFAEEKERMLQSLGDKHILVLRNHGVAVCESDIQRAF 191 H++FYGAQL+GR+GYH FEGITLFAEEK RML SLGDKHILVLRNHGVAV E DI + F Sbjct: 131 SHDNFYGAQLYGRVGYHTFEGITLFAEEKVRMLASLGDKHILVLRNHGVAVGEMDIAKTF 190 Query: 192 FLLWTVQRAAEIQVAGRSMAGEDQLLPDAVRQKCADLTQQLIRNDGFAVIFFEAIVRKM 250 FLLWTVQRAAEIQ + GED LP + QKCADLTQ LIR+ GFAV FF+A+VRKM Sbjct: 191 FLLWTVQRAAEIQCHAGMIPGEDNPLPAEIGQKCADLTQMLIRDSGFAVKFFDAMVRKM 249 >ref|YP_004381989.1| hypothetical protein MDS_4206 [Pseudomonas mendocina NK-01] gb|AEB60237.1| hypothetical protein MDS_4206 [Pseudomonas mendocina NK-01] Length = 255 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 171/239 (71%), Positives = 197/239 (82%) Query: 12 KPSHCSDEEWALRIQLAHCYRLVDYLGWTEMIFNHISVRVPGPEHHYLVNPFALNYNEVT 71 KP+HCSDEEWALR++LA+CY LVD+ GWTE IFNHIS R+PGP HHYLVNPF LNY+EVT Sbjct: 9 KPAHCSDEEWALRVKLAYCYHLVDWFGWTETIFNHISARLPGPAHHYLVNPFGLNYSEVT 68 Query: 72 PANLLKVGLDGQLAEPSDYKANPAGFALHSAIHGARDDLRCVIHTHTTPISAVTMKKSGF 131 P NLLKV L G+ EPS Y NPAGFALHSA+HGARDD++CVIHTHTTPISAV KK GF Sbjct: 69 PGNLLKVDLHGKKLEPSPYDGNPAGFALHSAVHGARDDIQCVIHTHTTPISAVVQKKRGF 128 Query: 132 EHNDFYGAQLFGRIGYHAFEGITLFAEEKERMLQSLGDKHILVLRNHGVAVCESDIQRAF 191 H+DFYGAQL GRIGYH FEGITLF +EK RM++SLGDKH+LVLRNHG+AV ES I++ F Sbjct: 129 THDDFYGAQLHGRIGYHTFEGITLFDDEKARMIESLGDKHVLVLRNHGIAVGESSIEKTF 188 Query: 192 FLLWTVQRAAEIQVAGRSMAGEDQLLPDAVRQKCADLTQQLIRNDGFAVIFFEAIVRKM 250 FLLWTVQRAAE Q A ++ GED L D + KC+DLT LIR GFA F++A+VRKM Sbjct: 189 FLLWTVQRAAENQCAAGALGGEDNPLEDGIAAKCSDLTAMLIRESGFATKFYDAMVRKM 247 >ref|YP_004314675.1| class II aldolase/adducin family protein [Marinomonas mediterranea MMB-1] gb|ADZ92839.1| class II aldolase/adducin family protein [Marinomonas mediterranea MMB-1] Length = 253 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 161/239 (67%), Positives = 190/239 (79%) Query: 12 KPSHCSDEEWALRIQLAHCYRLVDYLGWTEMIFNHISVRVPGPEHHYLVNPFALNYNEVT 71 KP HCS+EEW LR++LAHCY L+D+ GWTE IFNHIS R+P + YLVNPF LNY E+T Sbjct: 7 KPDHCSEEEWQLRVKLAHCYHLIDFFGWTETIFNHISARLPHIDGEYLVNPFGLNYTEIT 66 Query: 72 PANLLKVGLDGQLAEPSDYKANPAGFALHSAIHGARDDLRCVIHTHTTPISAVTMKKSGF 131 P NL+KV + G + S Y NPAGFALH AIH AR+D+ CVIHTHT +SAV MKK+GF Sbjct: 67 PKNLIKVDVKGNKLDDSPYDGNPAGFALHGAIHAAREDVHCVIHTHTNEVSAVAMKKAGF 126 Query: 132 EHNDFYGAQLFGRIGYHAFEGITLFAEEKERMLQSLGDKHILVLRNHGVAVCESDIQRAF 191 H+ FYGAQL+GR+GYH FEGITLF +EKERML+SLGDKHILVLRNHG+AV E DI+R F Sbjct: 127 SHDSFYGAQLYGRVGYHDFEGITLFDDEKERMLKSLGDKHILVLRNHGIAVGEFDIERTF 186 Query: 192 FLLWTVQRAAEIQVAGRSMAGEDQLLPDAVRQKCADLTQQLIRNDGFAVIFFEAIVRKM 250 FLLWTVQRAAEIQV ++ G D LL + V+ KCADLTQ LI++ GFA FF A+VRKM Sbjct: 187 FLLWTVQRAAEIQVTSGALGGADVLLGEDVQTKCADLTQMLIKDSGFADKFFNAMVRKM 245 >ref|YP_001340676.1| class II aldolase/adducin family protein [Marinomonas sp. MWYL1] gb|ABR70741.1| class II aldolase/adducin family protein [Marinomonas sp. MWYL1] Length = 253 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 160/239 (66%), Positives = 190/239 (79%) Query: 12 KPSHCSDEEWALRIQLAHCYRLVDYLGWTEMIFNHISVRVPGPEHHYLVNPFALNYNEVT 71 +P+H S EEWALR++LAHCY L+D+ GWTE IFNHIS R+P E YLVNPF LNY E+T Sbjct: 7 RPTHISKEEWALRVKLAHCYHLIDFFGWTETIFNHISARLPHIEGEYLVNPFGLNYTEIT 66 Query: 72 PANLLKVGLDGQLAEPSDYKANPAGFALHSAIHGARDDLRCVIHTHTTPISAVTMKKSGF 131 P NL+KV ++G + S Y NPAGFALH AIH AR+D+ CVIHTHT +SAV MKK GF Sbjct: 67 PENLIKVDVNGHKLDDSPYDGNPAGFALHGAIHAAREDIHCVIHTHTNEVSAVAMKKQGF 126 Query: 132 EHNDFYGAQLFGRIGYHAFEGITLFAEEKERMLQSLGDKHILVLRNHGVAVCESDIQRAF 191 H+ FYGAQL+GR+GYHAFEGITLF +EK RML+SLG KHILVLRNHG+AV E DI+R F Sbjct: 127 SHDSFYGAQLYGRVGYHAFEGITLFDDEKSRMLESLGQKHILVLRNHGIAVGEFDIERTF 186 Query: 192 FLLWTVQRAAEIQVAGRSMAGEDQLLPDAVRQKCADLTQQLIRNDGFAVIFFEAIVRKM 250 FLLWTVQRAAEIQV ++ GED LL +R+KCADLTQ LI++ GFA F+ A+VRKM Sbjct: 187 FLLWTVQRAAEIQVTSGALGGEDVLLEQGIREKCADLTQMLIKDSGFADKFYNAMVRKM 245