BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1115.p (344 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774774.1| amino acid ABC transporter permease [Herbasp... 503 e-140 ref|YP_001340680.1| inner-membrane translocator [Marinomonas sp.... 372 e-101 gb|EFV82855.1| ABC transporter permease [Achromobacter xylosoxid... 368 e-100 ref|YP_003977015.1| inner-membrane translocator [Achromobacter x... 368 e-100 ref|ZP_06686022.1| ABC superfamily ATP binding cassette transpor... 365 6e-99 >ref|YP_003774774.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62866.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 329/344 (95%), Positives = 338/344 (98%) Query: 1 MNLQIVALLGQDGITNGAIYALLALSIVLVFTVTRILLIPQGEFVSFGALTMGMMQNGQP 60 MNLQIVALLGQDGITNGAIYALLALSIVLVFTVTRILLIPQGEFVSFGALTMGMMQNGQP Sbjct: 1 MNLQIVALLGQDGITNGAIYALLALSIVLVFTVTRILLIPQGEFVSFGALTMGMMQNGQP 60 Query: 61 LTVAWLLVAMCLGACAFDLYDMWRTSRRRPSLWLPAKLVYAVVVAGLALNLNFATLPMLA 120 LTVAWLLVAMCLGACAFDLYDMWRTSRRRPSLWLPAKL YA VV G+AL++NFATLPML Sbjct: 61 LTVAWLLVAMCLGACAFDLYDMWRTSRRRPSLWLPAKLAYAAVVGGVALSVNFATLPMLV 120 Query: 121 QIAMTLLLLVPMGPLMYRMAFQPIASASPLVLLIVSIAVHVALVGVALLVFGPEGARTAP 180 QIAMTLLLLVP+GPLMYRMAFQPIA+ASPLVLLIVSIAVHVALVGVALLVFGPEGARTAP Sbjct: 121 QIAMTLLLLVPLGPLMYRMAFQPIATASPLVLLIVSIAVHVALVGVALLVFGPEGARTAP 180 Query: 181 FTEASLELGSLRFSSQALWVICVSLLLIVGLFLMFERTLYGKALRAAALNRLGARLMGIS 240 FTEA+LELGSLR SSQALWVICVSLLLIVGLFLMFERTLYGKALRAAALNR+GARLMGIS Sbjct: 181 FTEAALELGSLRLSSQALWVICVSLLLIVGLFLMFERTLYGKALRAAALNRMGARLMGIS 240 Query: 241 PVFAGKAMFLLASLIGVMSGVLIAPITTIYYDSGFLISLKGFVGSIIGGLVSYPVAAIGA 300 PVFAGKAMFLLASLIGVMSGVLIAPITTIYYDSGFLISLKGFVGSIIGGLVSYP+AA GA Sbjct: 241 PVFAGKAMFLLASLIGVMSGVLIAPITTIYYDSGFLISLKGFVGSIIGGLVSYPLAAAGA 300 Query: 301 LAIGLIESFSTFWASAYKEIIVFVLIIPILLWRSLSTRHVEEEE 344 LAIGLIESFSTFWASAYKEIIVFVLIIPILLWRSL+TRHVEEEE Sbjct: 301 LAIGLIESFSTFWASAYKEIIVFVLIIPILLWRSLTTRHVEEEE 344 >ref|YP_001340680.1| inner-membrane translocator [Marinomonas sp. MWYL1] gb|ABR70745.1| inner-membrane translocator [Marinomonas sp. MWYL1] Length = 345 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 224/345 (64%), Positives = 273/345 (79%), Gaps = 1/345 (0%) Query: 1 MNLQIVALLGQDGITNGAIYALLALSIVLVFTVTRILLIPQGEFVSFGALTMGMMQNGQP 60 MN QI LLGQDG+TNGAIYALLALSI+LVFTVTRILLIP GEFV+FGALTM MQ G+ Sbjct: 1 MNFQIATLLGQDGLTNGAIYALLALSILLVFTVTRILLIPLGEFVTFGALTMAAMQMGKA 60 Query: 61 LTVAWLLVAMCLGACAFDLYDMWRTSRRRPSLW-LPAKLVYAVVVAGLALNLNFATLPML 119 + WLL+ + L C DLY + R + + KL YA+ + GL NL + +PM Sbjct: 61 PKLEWLLLGLVLIDCVLDLYQQIKYHIDRNKMKKIALKLGYALAMIGLLNNLPLSEIPMA 120 Query: 120 AQIAMTLLLLVPMGPLMYRMAFQPIASASPLVLLIVSIAVHVALVGVALLVFGPEGARTA 179 Q+ +TL L+VP+GP+MYR+ FQP+A A LVLLIVSIA+HVA+VG+ LL+FGPEGART Sbjct: 121 CQVLLTLCLIVPLGPIMYRLFFQPLADAPALVLLIVSIALHVAMVGIGLLLFGPEGARTQ 180 Query: 180 PFTEASLELGSLRFSSQALWVICVSLLLIVGLFLMFERTLYGKALRAAALNRLGARLMGI 239 PF++ LG++ SQ LWVI VS+ LIV LF+ FERTLYGKALRA A+NR+GARL GI Sbjct: 181 PFSDTGFRLGAVMLKSQTLWVILVSIFLIVTLFIAFERTLYGKALRATAVNRMGARLQGI 240 Query: 240 SPVFAGKAMFLLASLIGVMSGVLIAPITTIYYDSGFLISLKGFVGSIIGGLVSYPVAAIG 299 SPVFAGKA F LA+ IG SG+LIAPITT+YYDSGF+ISLKGFVG+IIGGLVSYP+AAIG Sbjct: 241 SPVFAGKATFALAAFIGSASGILIAPITTLYYDSGFIISLKGFVGAIIGGLVSYPIAAIG 300 Query: 300 ALAIGLIESFSTFWASAYKEIIVFVLIIPILLWRSLSTRHVEEEE 344 A+A+G+IE+FS FWAS YKEIIVF LIIP L+WRS+++ HVE++E Sbjct: 301 AVAVGMIEAFSMFWASNYKEIIVFTLIIPFLIWRSMNSHHVEDDE 345 >gb|EFV82855.1| ABC transporter permease [Achromobacter xylosoxidans C54] Length = 346 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 237/345 (68%), Positives = 282/345 (81%), Gaps = 1/345 (0%) Query: 1 MNLQIVALLGQDGITNGAIYALLALSIVLVFTVTRILLIPQGEFVSFGALTMGMMQNGQP 60 MN QI +LGQDGITNGAIYALLALSI+LVFTVTR+L IPQGEFV+FGALTM +Q G+P Sbjct: 1 MNAQIALILGQDGITNGAIYALLALSILLVFTVTRVLFIPQGEFVAFGALTMAALQAGKP 60 Query: 61 LTVAWLLVAMCLGACAFDLYDMWRTSRRRPSLW-LPAKLVYAVVVAGLALNLNFATLPML 119 + + WLL+A L DL + RR LW + AK+VY +++A L L A LPM Sbjct: 61 VLLVWLLLAFALAEAVADLTARAKRPGRRAPLWRIGAKVVYPLLLAALFYRLPLAQLPMA 120 Query: 120 AQIAMTLLLLVPMGPLMYRMAFQPIASASPLVLLIVSIAVHVALVGVALLVFGPEGARTA 179 Q +TLLL+VPMGP +YR+ +QPIASAS LVLLIVSIAVH+ALVG+ LL FG EGARTA Sbjct: 121 VQALLTLLLVVPMGPQLYRLFYQPIASASTLVLLIVSIAVHLALVGLGLLAFGAEGARTA 180 Query: 180 PFTEASLELGSLRFSSQALWVICVSLLLIVGLFLMFERTLYGKALRAAALNRLGARLMGI 239 PF++ASL LG + +SQALWV+ VS LLIV L+ FER++YGKALRAAA NRLGARLMGI Sbjct: 181 PFSDASLALGPVNVNSQALWVVAVSALLIVVLYQFFERSMYGKALRAAAFNRLGARLMGI 240 Query: 240 SPVFAGKAMFLLASLIGVMSGVLIAPITTIYYDSGFLISLKGFVGSIIGGLVSYPVAAIG 299 SPVFAGKA F LA+LIG +SG+LIAPITT+Y+DSGF++SLKGFVG+IIGGLVSYP+AA G Sbjct: 241 SPVFAGKATFFLAALIGTVSGILIAPITTMYFDSGFMVSLKGFVGAIIGGLVSYPLAAAG 300 Query: 300 ALAIGLIESFSTFWASAYKEIIVFVLIIPILLWRSLSTRHVEEEE 344 A+ +GLIE+FS+FWASAYKEIIVF LIIP+LLWRSL + HVEEEE Sbjct: 301 AVLVGLIEAFSSFWASAYKEIIVFTLIIPVLLWRSLKSHHVEEEE 345 >ref|YP_003977015.1| inner-membrane translocator [Achromobacter xylosoxidans A8] gb|ADP14300.1| inner-membrane translocator 17 [Achromobacter xylosoxidans A8] Length = 346 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 233/345 (67%), Positives = 277/345 (80%), Gaps = 1/345 (0%) Query: 1 MNLQIVALLGQDGITNGAIYALLALSIVLVFTVTRILLIPQGEFVSFGALTMGMMQNGQP 60 MN QI +LGQDGITNGAIYALLALSI+LVFTVTR+L IPQGEFV+FGALTM +Q G+P Sbjct: 1 MNAQIALILGQDGITNGAIYALLALSILLVFTVTRVLFIPQGEFVAFGALTMAALQAGKP 60 Query: 61 LTVAWLLVAMCLGACAFDLYDMWRTSRRRPSLW-LPAKLVYAVVVAGLALNLNFATLPML 119 + + WLL A + DL + R W + KL Y +V+A L L A LPM Sbjct: 61 VLLVWLLFAFAVAEVGADLLARRKRPGRNRGAWRMAVKLAYPLVLAALFYKLPLAQLPMA 120 Query: 120 AQIAMTLLLLVPMGPLMYRMAFQPIASASPLVLLIVSIAVHVALVGVALLVFGPEGARTA 179 Q +TLLLLVPMGP +YR+ +QPIASAS LVLLIVSIAVH+ALVG+ LL FG EGARTA Sbjct: 121 VQALLTLLLLVPMGPQLYRLFYQPIASASTLVLLIVSIAVHLALVGLGLLAFGAEGARTA 180 Query: 180 PFTEASLELGSLRFSSQALWVICVSLLLIVGLFLMFERTLYGKALRAAALNRLGARLMGI 239 PF++ASL LG L +SQALWV+ VS LLI+ L+ FER++YGKALRAAA NRLGARLMGI Sbjct: 181 PFSDASLALGPLNVNSQALWVVAVSALLIIVLYQFFERSMYGKALRAAAFNRLGARLMGI 240 Query: 240 SPVFAGKAMFLLASLIGVMSGVLIAPITTIYYDSGFLISLKGFVGSIIGGLVSYPVAAIG 299 SP+FAGKA F LA+LIG +SG+LIAPITT+Y+DSGF++SLKGFVG+IIGGLVSYP+AA G Sbjct: 241 SPIFAGKATFFLAALIGTVSGILIAPITTMYFDSGFMVSLKGFVGAIIGGLVSYPLAAAG 300 Query: 300 ALAIGLIESFSTFWASAYKEIIVFVLIIPILLWRSLSTRHVEEEE 344 A+ +GLIE+FS+FWASAYKEIIVF LIIP+LLWRSL + HVEEE+ Sbjct: 301 AILVGLIEAFSSFWASAYKEIIVFTLIIPVLLWRSLKSHHVEEED 345 >ref|ZP_06686022.1| ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] gb|EFF77097.1| ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] Length = 346 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 232/345 (67%), Positives = 281/345 (81%), Gaps = 1/345 (0%) Query: 1 MNLQIVALLGQDGITNGAIYALLALSIVLVFTVTRILLIPQGEFVSFGALTMGMMQNGQP 60 MN QI +LGQDGITNGAIYALLALSI+LVFTVTR+L IPQGEFV+FGALTM +Q G+P Sbjct: 1 MNAQIALILGQDGITNGAIYALLALSILLVFTVTRVLFIPQGEFVAFGALTMAAIQAGKP 60 Query: 61 LTVAWLLVAMCLGACAFDLYDMWRTSRRRPSLW-LPAKLVYAVVVAGLALNLNFATLPML 119 + + WLL+A L DL R R LW + AK +Y +++AGL L A LPM Sbjct: 61 VLLVWLLLAFALAEAVADLMARARRPGRSRGLWRIAAKAIYPLILAGLLYRLPLAQLPMA 120 Query: 120 AQIAMTLLLLVPMGPLMYRMAFQPIASASPLVLLIVSIAVHVALVGVALLVFGPEGARTA 179 Q +TLLL+VPMGP +YR+ +QPIASAS LVLLIVSIAVH+ALVG+ LL FG EGARTA Sbjct: 121 VQALLTLLLVVPMGPQLYRLFYQPIASASTLVLLIVSIAVHLALVGLGLLAFGAEGARTA 180 Query: 180 PFTEASLELGSLRFSSQALWVICVSLLLIVGLFLMFERTLYGKALRAAALNRLGARLMGI 239 PF++ASL LG + +SQALWV+ VS +LI+ L+ FER++YGKALRAAA NRLGARLMGI Sbjct: 181 PFSDASLALGPINVNSQALWVVAVSAVLIIVLYQFFERSMYGKALRAAAFNRLGARLMGI 240 Query: 240 SPVFAGKAMFLLASLIGVMSGVLIAPITTIYYDSGFLISLKGFVGSIIGGLVSYPVAAIG 299 SP+FAG+A F LA+LIG +SG+LIAPITT+Y+DSGF++SLKGFVG+IIGGLVSYP+AA G Sbjct: 241 SPIFAGRATFFLAALIGTVSGILIAPITTMYFDSGFMVSLKGFVGAIIGGLVSYPLAAAG 300 Query: 300 ALAIGLIESFSTFWASAYKEIIVFVLIIPILLWRSLSTRHVEEEE 344 A+ +GLIE+FS+FWASAYKEIIVF LIIP+LLWRSL + HVEEE+ Sbjct: 301 AVLVGLIEAFSSFWASAYKEIIVFTLIIPVLLWRSLKSHHVEEED 345