BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1114.p (423 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774773.1| amino acid ABC transporter periplasmic prote... 639 0.0 gb|EFV82856.1| Leu/Ile/Val-binding protein [Achromobacter xyloso... 549 e-154 gb|EGP45502.1| receptor family ligand binding region family prot... 548 e-154 ref|ZP_06686023.1| branched-chain amino acid ABC superfamily ATP... 548 e-154 ref|YP_003977016.1| receptor family ligand binding region family... 539 e-151 >ref|YP_003774773.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62865.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 639 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 352/390 (90%), Positives = 370/390 (94%), Gaps = 6/390 (1%) Query: 33 MLHKRLIATAATAVLAAAGTLASVAGNPAFAQVKIGVVTSSTGPVSLVGIPQKNTVPLLP 92 MLHKRLIA A +L ++S+A +PA AQVK+GVVTSSTGPVSLVGIPQKNTVPLLP Sbjct: 1 MLHKRLIA--AVVLLG----MSSLAMHPALAQVKVGVVTSSTGPVSLVGIPQKNTVPLLP 54 Query: 93 AKAGDLKIEYISLDDASDPTKSVTEVKKLIAEYNVDAIIGPSGSPNAMGVISFAAEAGVP 152 K GDLK+EYISLDDASDPTKSVTE+KKLIAE+NVDAIIGPSGSPNAMGVISF AEAGVP Sbjct: 55 TKIGDLKVEYISLDDASDPTKSVTEIKKLIAEHNVDAIIGPSGSPNAMGVISFVAEAGVP 114 Query: 153 MLAPVGTAAVVLPMTEQKKWVFKTTQNDDLIASALVAQMVKTKVKTAGFIAVNDPFGENW 212 +LAPVGTAAVVLPMTEQKKWVFKTTQNDDLIA ALV QMVKTKVKTAGFIAVNDPFGENW Sbjct: 115 LLAPVGTAAVVLPMTEQKKWVFKTTQNDDLIAKALVDQMVKTKVKTAGFIAVNDPFGENW 174 Query: 213 AKVFTELAAKNNIKIVANERYQRTDTSVTAQTLKIVAANPDAVLVAAPGAATVLPQTTLF 272 A+VF++LAAKNNIKIVANERYQRTDTSVTAQ+LKIVAANPDAVLVAAPGAATVLPQTTLF Sbjct: 175 ARVFSDLAAKNNIKIVANERYQRTDTSVTAQSLKIVAANPDAVLVAAPGAATVLPQTTLF 234 Query: 273 DQGYKGKIYQTHGAALPAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVATEYIEAY 332 DQGYKGKIYQTHGAALPAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVAT+YIEAY Sbjct: 235 DQGYKGKIYQTHGAALPAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVATDYIEAY 294 Query: 333 KKMYNTVPATFGANVYDAGLLLEKAIPVAAKKAKPGSKEFRAALRDALESTKEVVGTQGV 392 KKMYN VPATFGANVYDAGLLLEKAIPVAA+KAKPGSKEFRAALRDALE+TKEVVGTQGV Sbjct: 295 KKMYNAVPATFGANVYDAGLLLEKAIPVAARKAKPGSKEFRAALRDALENTKEVVGTQGV 354 Query: 393 YNMSPADHSGFDERGRELITVKGGNWTLLK 422 YNMS DHSGFD+RGRELITVKGGNW LLK Sbjct: 355 YNMSATDHSGFDDRGRELITVKGGNWALLK 384 >gb|EFV82856.1| Leu/Ile/Val-binding protein [Achromobacter xylosoxidans C54] Length = 382 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 294/374 (78%), Positives = 324/374 (86%) Query: 49 AAGTLASVAGNPAFAQVKIGVVTSSTGPVSLVGIPQKNTVPLLPAKAGDLKIEYISLDDA 108 AA LA++ P AQVK+GVVTSSTGP +LVGIPQKNTVPLLP K GDL +EYISLDDA Sbjct: 9 AAAVLATLVSLPVLAQVKVGVVTSSTGPTALVGIPQKNTVPLLPKKIGDLTVEYISLDDA 68 Query: 109 SDPTKSVTEVKKLIAEYNVDAIIGPSGSPNAMGVISFAAEAGVPMLAPVGTAAVVLPMTE 168 SD T SVT KKLI E NVDA+IGPSGSPNAMGVI FAAEAGVPMLAPVGTAAVVLPM E Sbjct: 69 SDSTNSVTAFKKLITEQNVDALIGPSGSPNAMGVIQFAAEAGVPMLAPVGTAAVVLPMNE 128 Query: 169 QKKWVFKTTQNDDLIASALVAQMVKTKVKTAGFIAVNDPFGENWAKVFTELAAKNNIKIV 228 QKKWVFKTTQNDD+IA ALV M KT +KT GFI +NDP+GENW KVF+ LAA+ IKI Sbjct: 129 QKKWVFKTTQNDDIIARALVDHMAKTGIKTVGFIGLNDPYGENWYKVFSGLAAEKGIKIT 188 Query: 229 ANERYQRTDTSVTAQTLKIVAANPDAVLVAAPGAATVLPQTTLFDQGYKGKIYQTHGAAL 288 ANERY R D+SVT Q LKI+AA PDAVLVAAPGAA+VLPQTTLFDQGYKGK YQTHGAAL Sbjct: 189 ANERYLRFDSSVTGQALKILAAKPDAVLVAAPGAASVLPQTTLFDQGYKGKFYQTHGAAL 248 Query: 289 PAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVATEYIEAYKKMYNTVPATFGANVY 348 P FL+LG KVEGT+LAASLMLVLPE+PDSNPSKKVA++YI AY+K+ + PATFGANVY Sbjct: 249 PDFLKLGGKKVEGTVLAASLMLVLPEMPDSNPSKKVASDYIAAYEKLNGSKPATFGANVY 308 Query: 349 DAGLLLEKAIPVAAKKAKPGSKEFRAALRDALESTKEVVGTQGVYNMSPADHSGFDERGR 408 DAGLLLEKAIP+A K KPG+KEFR+ALRDALE T+E+VGTQGVYNMS ADHSGFD+RGR Sbjct: 309 DAGLLLEKAIPLAEKAGKPGTKEFRSALRDALEQTRELVGTQGVYNMSAADHSGFDDRGR 368 Query: 409 ELITVKGGNWTLLK 422 ELITVK GNWTL+K Sbjct: 369 ELITVKDGNWTLVK 382 >gb|EGP45502.1| receptor family ligand binding region family protein 8 [Achromobacter xylosoxidans AXX-A] Length = 382 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 292/374 (78%), Positives = 324/374 (86%) Query: 49 AAGTLASVAGNPAFAQVKIGVVTSSTGPVSLVGIPQKNTVPLLPAKAGDLKIEYISLDDA 108 AA LA++ P AQVK+GVVTSSTGP +LVGIPQKNTVPLLP K GDL +EYISLDDA Sbjct: 9 AAAVLATLVSLPVLAQVKVGVVTSSTGPTALVGIPQKNTVPLLPKKIGDLTVEYISLDDA 68 Query: 109 SDPTKSVTEVKKLIAEYNVDAIIGPSGSPNAMGVISFAAEAGVPMLAPVGTAAVVLPMTE 168 SD T SVT KKLI E NVDA+IGPSGSPNAMGVI FAAEAGVPMLAPVGTAAVVLPM E Sbjct: 69 SDSTNSVTAFKKLITEQNVDALIGPSGSPNAMGVIQFAAEAGVPMLAPVGTAAVVLPMNE 128 Query: 169 QKKWVFKTTQNDDLIASALVAQMVKTKVKTAGFIAVNDPFGENWAKVFTELAAKNNIKIV 228 QKKWVFKTTQNDD+IA ALV M KT +KT GFI +NDP+GENW KVF+ LAA+ IK+ Sbjct: 129 QKKWVFKTTQNDDIIARALVDHMAKTGIKTVGFIGLNDPYGENWYKVFSGLAAEKGIKLT 188 Query: 229 ANERYQRTDTSVTAQTLKIVAANPDAVLVAAPGAATVLPQTTLFDQGYKGKIYQTHGAAL 288 ANERY R D+SVT Q LKI+AA PDAVL+AAPGAA+VLPQTTLFDQGYKGK YQTHGAAL Sbjct: 189 ANERYLRFDSSVTGQALKILAAKPDAVLIAAPGAASVLPQTTLFDQGYKGKFYQTHGAAL 248 Query: 289 PAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVATEYIEAYKKMYNTVPATFGANVY 348 P FL+LG KVEGT+LAASLMLVLPE+PDSNPSKKVA++YI AY+K+ + PATFGANVY Sbjct: 249 PDFLKLGGKKVEGTVLAASLMLVLPEMPDSNPSKKVASDYIAAYEKLNGSKPATFGANVY 308 Query: 349 DAGLLLEKAIPVAAKKAKPGSKEFRAALRDALESTKEVVGTQGVYNMSPADHSGFDERGR 408 DAGLLLEKAIP+A K KPG+KEFR+ALRDALE T+E+VGTQGVYNMS ADHSGFD+RGR Sbjct: 309 DAGLLLEKAIPLAEKAGKPGTKEFRSALRDALEQTRELVGTQGVYNMSAADHSGFDDRGR 368 Query: 409 ELITVKGGNWTLLK 422 ELITVK GNWTL+K Sbjct: 369 ELITVKDGNWTLVK 382 >ref|ZP_06686023.1| branched-chain amino acid ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] gb|EFF77098.1| branched-chain amino acid ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] Length = 383 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 291/363 (80%), Positives = 319/363 (87%) Query: 60 PAFAQVKIGVVTSSTGPVSLVGIPQKNTVPLLPAKAGDLKIEYISLDDASDPTKSVTEVK 119 P AQVK+GVVTSSTGP +LVGIPQKNTVPLLP K GDL +EYISLDDASD T SVT K Sbjct: 21 PVLAQVKVGVVTSSTGPTALVGIPQKNTVPLLPKKIGDLTVEYISLDDASDSTNSVTAFK 80 Query: 120 KLIAEYNVDAIIGPSGSPNAMGVISFAAEAGVPMLAPVGTAAVVLPMTEQKKWVFKTTQN 179 KLI+E NVDA+IGPSGSPNAMGVI FAAEAGVPMLAPVGTAAVVLPM EQKKWVFKTTQN Sbjct: 81 KLISEQNVDALIGPSGSPNAMGVIQFAAEAGVPMLAPVGTAAVVLPMNEQKKWVFKTTQN 140 Query: 180 DDLIASALVAQMVKTKVKTAGFIAVNDPFGENWAKVFTELAAKNNIKIVANERYQRTDTS 239 DD+IA ALV M KT +KT GFI +NDP+GENW KVF+ LAA+ IKI ANERY R D+S Sbjct: 141 DDIIARALVDHMAKTGIKTVGFIGLNDPYGENWYKVFSGLAAEKGIKIAANERYLRFDSS 200 Query: 240 VTAQTLKIVAANPDAVLVAAPGAATVLPQTTLFDQGYKGKIYQTHGAALPAFLQLGKNKV 299 VT Q LKI+AA PDAVLVAAPGAA+VLPQTTLFDQGYKGK YQTHGAALP FL+LG KV Sbjct: 201 VTGQALKILAAKPDAVLVAAPGAASVLPQTTLFDQGYKGKFYQTHGAALPDFLKLGGKKV 260 Query: 300 EGTILAASLMLVLPEIPDSNPSKKVATEYIEAYKKMYNTVPATFGANVYDAGLLLEKAIP 359 EGT+LAASLMLVLPE+PDSNPSKKVAT+YI AY+K+ + PATFGANVYDAGLLLEKA+P Sbjct: 261 EGTVLAASLMLVLPEMPDSNPSKKVATDYIAAYEKLNGSKPATFGANVYDAGLLLEKAVP 320 Query: 360 VAAKKAKPGSKEFRAALRDALESTKEVVGTQGVYNMSPADHSGFDERGRELITVKGGNWT 419 +A K KPG+KEFR+ALRDALE TKE+VGTQGVYNMS ADHSGFD+RGRELITVK GNWT Sbjct: 321 IAEKAGKPGTKEFRSALRDALEQTKELVGTQGVYNMSAADHSGFDDRGRELITVKDGNWT 380 Query: 420 LLK 422 L+K Sbjct: 381 LVK 383 >ref|YP_003977016.1| receptor family ligand binding region family protein 8 [Achromobacter xylosoxidans A8] gb|ADP14301.1| receptor family ligand binding region family protein 8 [Achromobacter xylosoxidans A8] Length = 383 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 287/359 (79%), Positives = 315/359 (87%) Query: 64 QVKIGVVTSSTGPVSLVGIPQKNTVPLLPAKAGDLKIEYISLDDASDPTKSVTEVKKLIA 123 QVK+GVVTSSTGP +LVGIPQKNTVPLLP K GDL +EYISLDDASD T SVT KKLI+ Sbjct: 25 QVKVGVVTSSTGPTALVGIPQKNTVPLLPKKIGDLTVEYISLDDASDSTNSVTAFKKLIS 84 Query: 124 EYNVDAIIGPSGSPNAMGVISFAAEAGVPMLAPVGTAAVVLPMTEQKKWVFKTTQNDDLI 183 E NVDA+IGPSGSPNAMGVI FAAEAGVPMLAPVGTAAVVLPM EQKKWVFKTTQNDD+I Sbjct: 85 EQNVDALIGPSGSPNAMGVIQFAAEAGVPMLAPVGTAAVVLPMNEQKKWVFKTTQNDDII 144 Query: 184 ASALVAQMVKTKVKTAGFIAVNDPFGENWAKVFTELAAKNNIKIVANERYQRTDTSVTAQ 243 A ALV MVKT +KT GFI +NDP+GENW+KVF LAA+ IKI ANERY R D+SVT Q Sbjct: 145 ARALVDHMVKTGIKTVGFIGLNDPYGENWSKVFAGLAAEKGIKITANERYLRFDSSVTGQ 204 Query: 244 TLKIVAANPDAVLVAAPGAATVLPQTTLFDQGYKGKIYQTHGAALPAFLQLGKNKVEGTI 303 LKI+AA PDAVLVAAPGAA+VLPQTTLFDQGYKGK YQTHGAALP FL+LG KVEGT+ Sbjct: 205 ALKILAAKPDAVLVAAPGAASVLPQTTLFDQGYKGKFYQTHGAALPDFLKLGGKKVEGTV 264 Query: 304 LAASLMLVLPEIPDSNPSKKVATEYIEAYKKMYNTVPATFGANVYDAGLLLEKAIPVAAK 363 LAASLMLVLPE+PDSNPSKKVA +YI AY+K+ + PATFGANVYDAGLLLEKA+P+A K Sbjct: 265 LAASLMLVLPEMPDSNPSKKVAADYIAAYEKLNGSKPATFGANVYDAGLLLEKAVPIAEK 324 Query: 364 KAKPGSKEFRAALRDALESTKEVVGTQGVYNMSPADHSGFDERGRELITVKGGNWTLLK 422 KPG+KEFR ALRDALE TKE+VGTQGVYNM+ ADHSGFD+RGRELITVK G WTL+K Sbjct: 325 AGKPGTKEFRNALRDALEQTKELVGTQGVYNMTAADHSGFDDRGRELITVKDGAWTLVK 383