BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1112.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774771.1| hypothetical protein Hsero_1347 [Herbaspiril...   246   9e-64
ref|ZP_06842106.1| conserved hypothetical protein [Burkholderia ...   177   7e-43
ref|YP_438523.1| hypothetical protein BTH_II0322 [Burkholderia t...   174   5e-42
ref|ZP_02369704.1| hypothetical protein BthaT_01760 [Burkholderi...   174   6e-42
ref|YP_001810203.1| hypothetical protein BamMC406_3520 [Burkhold...   173   6e-42

>ref|YP_003774771.1| hypothetical protein Hsero_1347 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62863.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 123

 Score =  246 bits (628), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 121/123 (98%), Positives = 123/123 (100%)

Query: 1   MSQVPSNDKEPLRVLFCVGVTQNFFDLPATETGPVWQAYGQMMTALATMDGIKVLGTMDD 60
           MSQVPSNDKEPLRVLFCVGVTQNFFDLPATETGPVWQAYGQMMTALATM+GIKVLGTMDD
Sbjct: 1   MSQVPSNDKEPLRVLFCVGVTQNFFDLPATETGPVWQAYGQMMTALATMEGIKVLGTMDD 60

Query: 61  DRLMVGKSDDAPWTFYIMADVADLDTVVAACNLFRTTMVGEHRLWKYGKIEARVGRALII 120
           DRLMVGKSDDAPWTFYIMADVADLDTVVAACNLFRTTMVG+HRLWKYGKIEARVGRALII
Sbjct: 61  DRLMVGKSDDAPWTFYIMADVADLDTVVAACNLFRTTMVGQHRLWKYGKIEARVGRALII 120

Query: 121 QGA 123
           QGA
Sbjct: 121 QGA 123


>ref|ZP_06842106.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 gb|EFG70331.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
          Length = 125

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 79/108 (73%), Positives = 92/108 (85%)

Query: 11  PLRVLFCVGVTQNFFDLPATETGPVWQAYGQMMTALATMDGIKVLGTMDDDRLMVGKSDD 70
           PLRVLFC GVTQNFFDLP  + G VWQAYG+M+ A+ +M+G+KVLG MDDDRL VG +D+
Sbjct: 8   PLRVLFCCGVTQNFFDLPREQIGEVWQAYGKMLAAVESMEGVKVLGIMDDDRLTVGHADN 67

Query: 71  APWTFYIMADVADLDTVVAACNLFRTTMVGEHRLWKYGKIEARVGRAL 118
           +PWTFYIMADV D DT VA CNL+RTT VGE+ LW+YGKIEARVGRAL
Sbjct: 68  SPWTFYIMADVRDFDTTVAVCNLYRTTPVGEYNLWRYGKIEARVGRAL 115


>ref|YP_438523.1| hypothetical protein BTH_II0322 [Burkholderia thailandensis E264]
 ref|ZP_02383636.1| hypothetical protein BthaB_01870 [Burkholderia thailandensis Bt4]
 ref|ZP_05589839.1| hypothetical protein BthaA_20549 [Burkholderia thailandensis E264]
 gb|ABC35565.1| hypothetical protein BTH_II0322 [Burkholderia thailandensis E264]
          Length = 127

 Score =  174 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 79/106 (74%), Positives = 89/106 (83%)

Query: 11  PLRVLFCVGVTQNFFDLPATETGPVWQAYGQMMTALATMDGIKVLGTMDDDRLMVGKSDD 70
           PLRVLFC GVTQNFFDLP    G VWQAYG+M+ A+  MDG++VLG MDDDRL+VG+SD 
Sbjct: 8   PLRVLFCCGVTQNFFDLPRERIGEVWQAYGKMLAAVEAMDGVRVLGVMDDDRLVVGQSDG 67

Query: 71  APWTFYIMADVADLDTVVAACNLFRTTMVGEHRLWKYGKIEARVGR 116
           APWTFYIMAD+AD DT  A CNLFRTT VGE+ LW+YGKIEARVGR
Sbjct: 68  APWTFYIMADIADFDTATAVCNLFRTTPVGEYNLWRYGKIEARVGR 113


>ref|ZP_02369704.1| hypothetical protein BthaT_01760 [Burkholderia thailandensis TXDOH]
          Length = 121

 Score =  174 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 79/106 (74%), Positives = 89/106 (83%)

Query: 11  PLRVLFCVGVTQNFFDLPATETGPVWQAYGQMMTALATMDGIKVLGTMDDDRLMVGKSDD 70
           PLRVLFC GVTQNFFDLP    G VWQAYG+M+ A+  MDG++VLG MDDDRL+VG+SD 
Sbjct: 2   PLRVLFCCGVTQNFFDLPRERIGEVWQAYGKMLAAVEAMDGVRVLGVMDDDRLVVGQSDG 61

Query: 71  APWTFYIMADVADLDTVVAACNLFRTTMVGEHRLWKYGKIEARVGR 116
           APWTFYIMAD+AD DT  A CNLFRTT VGE+ LW+YGKIEARVGR
Sbjct: 62  APWTFYIMADIADFDTATAVCNLFRTTPVGEYNLWRYGKIEARVGR 107


>ref|YP_001810203.1| hypothetical protein BamMC406_3520 [Burkholderia ambifaria MC40-6]
 gb|ACB65987.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 125

 Score =  173 bits (439), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 80/113 (70%), Positives = 93/113 (82%)

Query: 11  PLRVLFCVGVTQNFFDLPATETGPVWQAYGQMMTALATMDGIKVLGTMDDDRLMVGKSDD 70
           PLRVLFC GV+QNFFDLP  + G VWQAYG M+ A+  M G++VLG MDDDRL+VG++D 
Sbjct: 8   PLRVLFCCGVSQNFFDLPREQIGEVWQAYGAMLAAVEAMPGVRVLGVMDDDRLVVGQADG 67

Query: 71  APWTFYIMADVADLDTVVAACNLFRTTMVGEHRLWKYGKIEARVGRALIIQGA 123
           APWTFYIMADVAD DT VA CNL+RTT VGE+ LW+YGKIEARVGRAL +  A
Sbjct: 68  APWTFYIMADVADFDTTVAVCNLYRTTPVGEYNLWRYGKIEARVGRALTVPPA 120